Ecosyste.ms: Issues

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GitHub / ksahlin/ultra issues and pull requests

#24 - Failed in building index

Issue - State: closed - Opened by FadelBerakdar 3 months ago - 3 comments

#23 - Can I use ultra to align est to references

Issue - State: open - Opened by xiekunwhy 6 months ago - 1 comment

#22 - UnboundLocalError: local variable 'i' referenced before assignment

Issue - State: open - Opened by rkworkhelp1 7 months ago - 4 comments

#20 - Error: invalid feature coordinates (end<start!) at line:

Issue - State: open - Opened by 5Tony over 1 year ago - 1 comment

#19 - Can not access local variable 'read_mems_tmp' when using --use_NAM_seeds

Issue - State: closed - Opened by FadelBerakdar over 1 year ago - 2 comments

#18 - Genomes FASTA/GTF files needed to run the evaluation

Issue - State: closed - Opened by FadelBerakdar over 1 year ago - 4 comments

#17 - Out of bound reads

Issue - State: closed - Opened by sguizard almost 2 years ago - 13 comments

#16 - a bug of `--alignment_threshold`

Issue - State: closed - Opened by ATPs about 2 years ago - 1 comment

#15 - Controlling (high) uLTRA RAM usage

Issue - State: open - Opened by pre-mRNA over 2 years ago - 1 comment

#14 - BUG -4294967296

Issue - State: open - Opened by sguizard over 2 years ago - 8 comments

#13 - Cigar is None

Issue - State: open - Opened by martinhaagmans over 2 years ago - 2 comments

#12 - Mapping with uLTRA without GTF?

Issue - State: closed - Opened by unique379r over 2 years ago - 3 comments

#11 - CIGAR string starts/ends with N

Issue - State: closed - Opened by zhixue over 2 years ago - 7 comments

#10 - ultra installation and run error

Issue - State: closed - Opened by unique379r over 2 years ago - 7 comments

#9 - Python bindings?

Issue - State: open - Opened by cnk113 almost 3 years ago - 1 comment
Labels: enhancement

#8 - Non-absolute paths don't resolve

Issue - State: closed - Opened by lassefolkersen almost 3 years ago - 5 comments

#7 - uLTRA + SQANTI3

Issue - State: closed - Opened by FJPardoPalacios about 3 years ago - 2 comments

#6 - How to control minimap 2 parameters during uLTRA alignment

Issue - State: closed - Opened by pre-mRNA about 3 years ago - 6 comments

#5 - KeyError when running test pipeline

Issue - State: closed - Opened by DrOllyGomez about 3 years ago - 3 comments

#4 - error when aligning direct RNA data during revcomp script

Issue - State: closed - Opened by pre-mRNA about 3 years ago - 3 comments

#2 - Alignment outside of contig

Issue - State: closed - Opened by MatthiasLienhard over 3 years ago - 11 comments

#1 - unclear/wrong argument description of uLTRA align in help

Issue - State: closed - Opened by MatthiasLienhard over 3 years ago - 4 comments
Labels: enhancement