ksahlin/isONclust issues and pull requests

#25 - Error on write_fastq

Issue - State: open - Opened by NHoang98 27 days ago - 7 comments

#24 - Working with huge datasets

Issue - State: closed - Opened by timyerg 5 months ago - 7 comments

#23 - Memory Problems with ONT Data

Issue - State: open - Opened by eprdz 10 months ago - 4 comments

#22 - Is it possible to use isOnclust on multiple samples?

Issue - State: open - Opened by DesmondoDekker about 2 years ago - 4 comments

#21 - RE: IsONclust on ONY; spot died with <Signals.SIGILL: 4>.

Issue - State: open - Opened by Malabady over 2 years ago - 2 comments

#20 - About the read order in each cluster in the final_clusters.tsv file

Issue - State: closed - Opened by lauraht over 2 years ago - 6 comments
Labels: question

#19 - homopolymer compression?

Issue - State: open - Opened by nextgenusfs almost 3 years ago - 4 comments

#18 - Is it possible to add a “--shortname" option for isONclust to output the read name with “the read id only”?

Issue - State: open - Opened by lauraht almost 3 years ago - 1 comment

#17 - Is it possible to use isONclust to help determine whether two reads came from the same isoform?

Issue - State: open - Opened by lauraht almost 3 years ago - 15 comments

#16 - ValueError: min() arg is an empty sequence

Issue - State: closed - Opened by JoshLoecker over 3 years ago - 8 comments

#15 - pipeline not an option

Issue - State: closed - Opened by danessel over 3 years ago - 1 comment

#14 - Dependencies for running --medaka argument

Issue - State: closed - Opened by Alxdu over 3 years ago - 2 comments

#13 - Added support for --k [4-9]

Pull Request - State: closed - Opened by jkomyno almost 4 years ago

#12 - TypeError with simulated fastq data

Issue - State: closed - Opened by jkomyno almost 4 years ago - 1 comment

#11 - Usage of --consensus to generate a non redundant fasta file with unique transcript sequences

Issue - State: closed - Opened by ALSP6OCT almost 4 years ago - 8 comments

#10 - struct.error

Issue - State: closed - Opened by huangziyan11111 over 4 years ago - 7 comments

#9 - Version mismatch with pypi repos

Issue - State: open - Opened by mptrsen over 4 years ago - 1 comment

#8 - Stranded vs unstranded sequencing

Issue - State: closed - Opened by wenzelm almost 5 years ago - 2 comments

#7 - error: too few arguments

Issue - State: closed - Opened by srbehera almost 5 years ago - 3 comments

#6 - isONclust: error: too few arguments

Issue - State: closed - Opened by emaleckova almost 5 years ago - 2 comments

#5 - Incorporation of isONclust to a currently used pipeline (Iso-Seq, PacBio)

Issue - State: closed - Opened by emaleckova almost 5 years ago - 5 comments

#4 - isonclust command for ONT data

Issue - State: closed - Opened by marisalim over 5 years ago - 19 comments

#3 - get_sorted_fastq_for_cluster.py, line 124 // p_no_error_in_kmers = 1.0 - exp_errors_in_kmers/ float((len(seq) - k +1))

Issue - State: closed - Opened by uqvirg almost 6 years ago - 4 comments

#2 - Add script to create separate fasta for each cluster

Issue - State: closed - Opened by ksahlin almost 6 years ago - 1 comment
Labels: enhancement

#1 - Threads error

Issue - State: closed - Opened by vineeth-s almost 6 years ago - 1 comment
Labels: bug

Ecosyste.ms: Issues

GitHub / ksahlin/isONclust issues and pull requests