Ecosyste.ms: Issues

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GitHub / ksahlin/NGSpeciesID issues and pull requests

#31 - Optimize speed by not invoking medaka a second time when nothing has changed

Pull Request - State: closed - Opened by joshuaowalker about 1 month ago - 1 comment

#30 - Add --symmetric_map_align_thresholds option

Pull Request - State: closed - Opened by joshuaowalker about 2 months ago - 3 comments

#29 - add medaka_fastq option

Pull Request - State: closed - Opened by pecholleyn about 1 year ago - 1 comment

#28 - Repeating sequences in consensus

Issue - State: closed - Opened by josiah-liew about 1 year ago - 2 comments

#27 - add the top_reads option to use top scoring reads

Pull Request - State: closed - Opened by dwmccheyne over 1 year ago - 1 comment

#26 - medaka consensus qualities

Issue - State: closed - Opened by pecholleyn over 1 year ago - 2 comments

#25 - duplicate consensus sequences generated

Issue - State: closed - Opened by pecholleyn over 1 year ago - 3 comments

#24 - Clarification on NGSpID output

Issue - State: open - Opened by omarkr8 almost 2 years ago - 3 comments

#23 - flexible clustering ?

Issue - State: open - Opened by omarkr8 almost 2 years ago - 1 comment

#22 - Installation package conflicts

Issue - State: open - Opened by kristycyw about 2 years ago - 3 comments

#21 - problem with medakka polishing

Issue - State: open - Opened by jhgffhgjf over 2 years ago - 13 comments

#19 - How to find allelels

Issue - State: closed - Opened by Thomieh73 almost 3 years ago - 6 comments

#18 - feat: add Dockerfile

Pull Request - State: closed - Opened by Coppini almost 3 years ago - 2 comments

#15 - Error on polish_sequences when there are 0 centers

Issue - State: closed - Opened by Coppini almost 3 years ago

#14 - Different output multiple samples (with for loop) and single sample

Issue - State: open - Opened by LunavdL over 3 years ago - 5 comments

#13 - online access?

Issue - State: closed - Opened by atks over 3 years ago - 7 comments

#12 - Parasail build error

Issue - State: open - Opened by atks over 3 years ago - 7 comments

#11 - Parasail building issues

Issue - State: closed - Opened by atks over 3 years ago - 1 comment

#10 - Problems installing NGSpeciesID

Issue - State: open - Opened by PKuperus over 3 years ago - 9 comments

#9 - Conda install needs additional linux dependencies

Issue - State: closed - Opened by 2tony2 over 3 years ago - 1 comment

#8 - Update example workflow docs

Pull Request - State: closed - Opened by marisalim over 3 years ago - 3 comments

#7 - Allow IUPAC code in primer sequences

Pull Request - State: closed - Opened by jdalino over 3 years ago - 2 comments

#6 - samtool error [E::sam_parse1] query name too long

Issue - State: closed - Opened by lixiaopi1985 over 3 years ago - 2 comments

#5 - consensus.sh error

Issue - State: closed - Opened by rkimoakbioinformatics over 3 years ago - 2 comments

#4 - Advice on tool for amplicon sequencing

Issue - State: closed - Opened by mlosilla almost 4 years ago - 3 comments

#3 - Add workflow example

Pull Request - State: closed - Opened by marisalim almost 4 years ago

#2 - Suggestion for [--rc_identity_threshold]

Issue - State: open - Opened by edgardomortiz over 4 years ago - 3 comments
Labels: enhancement

#1 - subprocess.CalledProcessError: Command 'medaka_consensus'

Issue - State: closed - Opened by ksahlin almost 5 years ago - 6 comments