Ecosyste.ms: Issues

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GitHub / krassowski/easy-entrez issues and pull requests

#36 - Request: `async` support

Issue - State: open - Opened by jamesbraza about 1 year ago

#35 - Documenting how to build docs

Pull Request - State: closed - Opened by jamesbraza about 1 year ago

#34 - Suggestion: `pytest-vcr` for reliable testing

Issue - State: open - Opened by jamesbraza about 1 year ago - 2 comments

#33 - How to (1) search by title and (2) download abstract from matching paper

Issue - State: closed - Opened by jamesbraza over 1 year ago - 1 comment

#32 - Adding `requirements.docs.txt`

Pull Request - State: closed - Opened by jamesbraza over 1 year ago - 2 comments

#31 - Bigger `EntrezAPI` docstring and `__init__` type hints

Pull Request - State: closed - Opened by jamesbraza over 1 year ago

#30 - Request: `StrEnum` for all filters

Issue - State: open - Opened by jamesbraza over 1 year ago

#29 - Better DOI term snippet, 3.7+ testing docs

Pull Request - State: closed - Opened by jamesbraza over 1 year ago - 1 comment

#28 - Docs request: significance of `email`

Issue - State: closed - Opened by jamesbraza over 1 year ago - 2 comments

#27 - Docs request: possible tool names

Issue - State: closed - Opened by jamesbraza over 1 year ago

#26 - Officially supporting Python 3.12

Pull Request - State: closed - Opened by jamesbraza over 1 year ago

#25 - Request: officially supporting Python 3.12

Issue - State: closed - Opened by jamesbraza over 1 year ago - 1 comment
Labels: enhancement

#24 - `pip install` to `README`

Pull Request - State: closed - Opened by jamesbraza over 1 year ago - 2 comments

#23 - Bump version to 0.3.7

Pull Request - State: closed - Opened by krassowski over 1 year ago

#22 - Silence pytest warnings

Pull Request - State: closed - Opened by jonasfreimuth over 1 year ago

#21 - Support pagination of search results

Pull Request - State: open - Opened by krassowski over 1 year ago
Labels: enhancement

#20 - Add new format RDT config

Pull Request - State: closed - Opened by krassowski over 1 year ago

#19 - Running pytest sometimes fails

Issue - State: open - Opened by jonasfreimuth over 1 year ago - 1 comment

#18 - Allow to disable Entrez search result limit

Pull Request - State: closed - Opened by jonasfreimuth over 1 year ago - 6 comments
Labels: enhancement

#17 - `fetch` method with JSON response raises exception

Issue - State: closed - Opened by GrazingScientist almost 2 years ago - 1 comment

#16 - Entrez search result limit

Issue - State: closed - Opened by noamiz5060 almost 2 years ago - 20 comments

#15 - Document batching in README, parse snp batch results

Pull Request - State: closed - Opened by krassowski about 2 years ago

#14 - Get coding consequence, add range example

Pull Request - State: closed - Opened by krassowski about 2 years ago

#13 - Fix misalignment in signatures for methods with `@support_batches`

Pull Request - State: open - Opened by krassowski about 2 years ago

#12 - Add DOI badge to README

Pull Request - State: closed - Opened by krassowski about 2 years ago

#11 - Document `parse_dbsnp_variants`, add py3.11

Pull Request - State: closed - Opened by krassowski about 2 years ago

#10 - Add example for converting DOI to PMID

Pull Request - State: closed - Opened by krassowski about 2 years ago

#9 - Improve handling of edge cases for `parse_dbsnp_variants`

Pull Request - State: closed - Opened by krassowski about 2 years ago

#8 - Fix `is_response_for`

Pull Request - State: closed - Opened by krassowski about 2 years ago

#7 - Add parsing utilities

Pull Request - State: closed - Opened by krassowski about 2 years ago

#6 - How can I obrain the SNP rs ids using CHR:POS_A1_A2 format for > 3K SNPs?

Issue - State: closed - Opened by Mahantesh-Biradar about 2 years ago - 1 comment

#5 - Batch querying

Issue - State: closed - Opened by Fnyasimi over 2 years ago - 2 comments

#4 - Add SNP position example

Pull Request - State: closed - Opened by krassowski about 3 years ago

#3 - Update CI versions matrix (-3.6, +3.10)

Pull Request - State: closed - Opened by krassowski about 3 years ago

#2 - Examples fail to run

Issue - State: open - Opened by jimrybarski about 3 years ago - 2 comments
Labels: bug

#1 - problem of (ReadTimeout ) API time out with easy_entrez

Issue - State: closed - Opened by Ahmed-fub over 3 years ago - 2 comments