kr-colab/ReLERNN issues and pull requests

#57 - How can I get a good fitting effect model

Issue - State: open - Opened by xingguowu 3 months ago - 2 comments

#56 - Error: chromosomes have different sample sizes!

Issue - State: closed - Opened by mbursell 4 months ago - 2 comments

#55 - Wrong auto-estimate of #CPUs (Slurm)

Issue - State: closed - Opened by VaiaPatta1985 5 months ago - 2 comments

#54 - Illegal instruction 4 errors when running the example

Issue - State: open - Opened by burbrink 5 months ago - 3 comments

#53 - The filepath provided must end in `.keras` (Keras model format)

Issue - State: closed - Opened by Ste40 5 months ago - 2 comments

#52 - Using --mask option does not change the output

Issue - State: open - Opened by irarun 6 months ago - 2 comments

#51 - The train step needs large memory

Issue - State: open - Opened by jiangzy26 6 months ago - 13 comments

#50 - NumPy Version Related Error

Issue - State: closed - Opened by mbursell 6 months ago - 3 comments

#49 - ReLERNN_TRAIN step has a problem: ValueError: The filepath provided must end in `.keras` (Keras model format)

Issue - State: closed - Opened by jiangzy26 6 months ago - 3 comments

#48 - Use different random seed for each msprime sim

Pull Request - State: closed - Opened by nspope 7 months ago - 1 comment

#47 - ReLERNN_SIMULATE not splitting vcf file properly

Issue - State: closed - Opened by menietoblazquez 7 months ago - 2 comments

#46 - Fix typo in setup.py

Pull Request - State: closed - Opened by nspope 7 months ago

#45 - very different corrections when bootstrapping

Issue - State: open - Opened by jbruxaux 8 months ago - 12 comments

#44 - Issue with chromosome length

Issue - State: closed - Opened by jbruxaux 8 months ago - 1 comment

#43 - missing comma from line 9 in setup.py

Issue - State: closed - Opened by YuhuanC 8 months ago - 1 comment

#42 - Issue with seed in examples

Issue - State: closed - Opened by jbruxaux 8 months ago - 3 comments

#41 - Separate predictions on different samples from same vcf?

Issue - State: closed - Opened by silastittes 8 months ago - 1 comment

#40 - How many diploid samples should be at least used

Issue - State: closed - Opened by jiangzy26 11 months ago - 2 comments

#39 - Which python version needed to successfully run ReLERNN?

Issue - State: closed - Opened by AndreMonc about 1 year ago - 1 comment

#38 - what is the recommended threshold for maf filtering

Issue - State: closed - Opened by Joyce121 over 1 year ago - 3 comments

#37 - RELERNN SIMULATE issue with vcf?

Issue - State: closed - Opened by dylandebaun over 1 year ago - 7 comments

#36 - removed hotspot prediction files

Pull Request - State: closed - Opened by jradrion over 1 year ago - 6 comments

#35 - ReLERNN_PREDICT_HOTSPO unable to run

Issue - State: closed - Opened by Joyce121 over 1 year ago - 1 comment

#34 - Is there a method to convert the result to other window size based results

Issue - State: closed - Opened by jiangzy26 almost 2 years ago - 1 comment

#33 - Question about software usage

Issue - State: closed - Opened by taishudayo over 2 years ago - 1 comment

#32 - Hi Im wondering how to generate the example.vcf haplotype file format

Issue - State: open - Opened by CXZheng7 about 3 years ago - 1 comment

#31 - Chromosome length bounded to 20 Mbp

Issue - State: open - Opened by guiSalle over 3 years ago - 1 comment

#30 - Recommendations for how to parameterize ReLERNN

Issue - State: open - Opened by andreaswallberg over 3 years ago

#29 - Demographic history error message

Issue - State: closed - Opened by kaskelso almost 4 years ago

#28 - empty files in SplitVCF/

Issue - State: closed - Opened by haotianzh almost 4 years ago - 10 comments

#27 - added batchSize override to predict

Pull Request - State: closed - Opened by jradrion almost 4 years ago

#26 - loss: nan - val_loss nan

Issue - State: closed - Opened by stsmall almost 4 years ago - 3 comments

#25 - memory allocate error on PREDICT

Issue - State: closed - Opened by stsmall almost 4 years ago - 6 comments

#24 - Unable to allocate memory with ReLERNN_TRAIN_POOL

Issue - State: closed - Opened by tjthurman about 4 years ago - 4 comments

#23 - Installation instructions

Issue - State: closed - Opened by VarIr about 4 years ago - 1 comment

#22 - tensorflow needed in requirements.txt

Issue - State: closed - Opened by brandonlind over 4 years ago - 1 comment

#21 - fixed dnn error in predict

Pull Request - State: closed - Opened by jradrion over 4 years ago

#20 - merging from upstream

Pull Request - State: closed - Opened by jradrion over 4 years ago

#19 - Bug fix

Pull Request - State: closed - Opened by jradrion over 4 years ago

#18 - Genome bed file

Issue - State: closed - Opened by tanu06 over 4 years ago - 10 comments

#17 - ReLERNN_TRAIN_POOL is slow

Issue - State: closed - Opened by jradrion over 4 years ago - 3 comments

#16 - ReLERNN train TF2 model.fit memory leak and errors

Issue - State: closed - Opened by LZeitler over 4 years ago - 12 comments

#15 - Merge pull request #1 from kern-lab/master

Pull Request - State: closed - Opened by jradrion over 4 years ago

#14 - Tf2

Pull Request - State: closed - Opened by jradrion over 4 years ago

#13 - Bump tensorflow from 1.13.1 to 1.15.2

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#12 - Bump tensorflow from 1.13.1 to 1.15.0

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#11 - Error with ReLERNN example script.

Issue - State: closed - Opened by tanu06 almost 5 years ago - 2 comments