koszullab/instaGRAAL issues and pull requests

#44 - FileNotFoundError: [Errno 2] No such file or directory: '/xxx/pyramids'

Issue - State: open - Opened by mcariou 11 months ago - 4 comments

#43 - usage of __shfl_down is deprecated

Issue - State: open - Opened by arielzn about 1 year ago - 2 comments

#42 - pycuda version 2022 not supported

Issue - State: open - Opened by arielzn about 1 year ago - 1 comment

#41 - pycuda installation

Issue - State: closed - Opened by etiennejourdier about 1 year ago - 2 comments

#40 - Error with --simple

Issue - State: closed - Opened by hgdarras about 1 year ago - 2 comments

#39 - pycuda issue with CUDA toolkit 12.0

Issue - State: closed - Opened by Overcraft90 over 1 year ago - 8 comments

#38 - Module 'numpy' has no attribute 'asscalar'

Issue - State: open - Opened by ABignaud almost 2 years ago
Labels: bug

#37 - How to separate "merged" chromosomes?

Issue - State: open - Opened by ManuPoretti about 2 years ago - 2 comments

#36 - instagraal-polish

Issue - State: closed - Opened by Overcraft90 about 2 years ago - 8 comments

#35 - Instagraal polish - KeyError

Issue - State: closed - Opened by alexvasilikop about 2 years ago - 2 comments

#34 - tools option not showing

Issue - State: closed - Opened by Overcraft90 over 2 years ago - 41 comments

#33 - KeyError on import reference genome

Issue - State: closed - Opened by anhong11 over 2 years ago - 3 comments

#32 - Instagraal docker run gives error about pyramid directory

Issue - State: closed - Opened by alexvasilikop over 2 years ago - 2 comments

#31 - module.cpp:1:10: fatal error: boost/python.hpp: No such file or directory

Issue - State: closed - Opened by papelypluma over 2 years ago - 3 comments

#30 - OSError: [Errno 28] No space left on device

Issue - State: closed - Opened by gorliver over 2 years ago - 2 comments

#29 - instagraal-polish: problem with -j option

Issue - State: closed - Opened by MGautierINRA almost 3 years ago - 1 comment

#28 - Description of new_info_frags.txt file

Issue - State: closed - Opened by Karimi-81 about 3 years ago - 1 comment

#27 - What does "--bomb" do?

Issue - State: closed - Opened by shelkmike about 3 years ago - 1 comment

#26 - How to use genetic linkage data?

Issue - State: open - Opened by shelkmike about 3 years ago

#25 - Should the initial reference assembly and final polished genome have equal sequence lengths?

Issue - State: closed - Opened by JamieAlfieri about 3 years ago - 1 comment

#24 - FileNotFoundError: [Errno 2] No such file or directory: 'hic_folder/pyramids'

Issue - State: closed - Opened by Karimi-81 about 3 years ago - 12 comments

#23 - Pyramid building issues with local version

Issue - State: closed - Opened by JamieAlfieri about 3 years ago - 1 comment

#22 - in requirements.txt, force install biopython 1.75, not latest version

Issue - State: closed - Opened by scottgeib over 3 years ago - 1 comment

#21 - no opengl branch

Issue - State: closed - Opened by MWSchmid over 3 years ago - 5 comments

#20 - Singularity run of docker image crash

Issue - State: closed - Opened by claumer over 3 years ago - 1 comment

#19 - Reference Dictionary issues

Issue - State: closed - Opened by MaxSchmidt1 over 3 years ago - 11 comments

#18 - error detected in the compilation of "kernel.cu"

Issue - State: closed - Opened by hung-th over 3 years ago - 8 comments

#17 - Unable to open file (h5py.h5f.open)

Issue - State: closed - Opened by hung-th over 3 years ago - 14 comments

#16 - freeglut problem

Issue - State: closed - Opened by KseniaJuravel about 4 years ago - 3 comments

#15 - should I worry about the warning?

Issue - State: closed - Opened by longzhangnation about 4 years ago - 12 comments

#14 - keyerror :"Unable to open object (object '0' doesn't exist)"

Issue - State: closed - Opened by longzhangnation about 4 years ago - 2 comments

#13 - InstaGRAAL docker crash

Issue - State: closed - Opened by bistace about 4 years ago - 22 comments

#12 - Error: freeglut (/usr/local/bin/instagraal): failed to open display ''

Issue - State: closed - Opened by longzhangnation about 4 years ago - 29 comments

#11 - issues when installing instagrall

Issue - State: closed - Opened by longzhangnation about 4 years ago - 12 comments

#10 - question about the installation of cuda

Issue - State: closed - Opened by longzhangnation about 4 years ago - 13 comments
Labels: wontfix

#9 - question about the hicstuff

Issue - State: closed - Opened by longzhangnation about 4 years ago - 4 comments

#8 - Versions / Tags

Issue - State: closed - Opened by lecorguille about 4 years ago - 1 comment

#7 - Junction

Issue - State: closed - Opened by hgdarras over 4 years ago - 1 comment

#6 - Running time and memory usage

Issue - State: open - Opened by Raina-M over 4 years ago - 16 comments

#5 - Deprecation warning

Issue - State: closed - Opened by ghost over 4 years ago - 1 comment

#4 - remove GUI ( no more call to OpenGL)

Pull Request - State: closed - Opened by cmdoret over 4 years ago

#3 - pycuda._driver error

Issue - State: closed - Opened by skumons about 5 years ago - 2 comments

#2 - X Error of failed request: BadValue

Issue - State: closed - Opened by psimion over 5 years ago - 1 comment

#1 - kernels missing

Issue - State: closed - Opened by cmdoret over 5 years ago - 2 comments

GitHub / koszullab/instaGRAAL issues and pull requests