koeng101/dnadesign issues and pull requests

#102 - add fragment iteration

Pull Request - State: closed - Opened by Koeng101 about 2 months ago

#101 - fragment fix

Pull Request - State: closed - Opened by Koeng101 about 2 months ago

#100 - Fragment flanks

Pull Request - State: closed - Opened by Koeng101 about 2 months ago

#99 - update .github artifacts from v2->v4

Pull Request - State: closed - Opened by Koeng101 3 months ago

#98 - sequencing pileup

Pull Request - State: open - Opened by Koeng101 3 months ago - 4 comments

#97 - parts

Pull Request - State: open - Opened by Koeng101 3 months ago - 1 comment

#96 - Py clone

Pull Request - State: closed - Opened by Koeng101 3 months ago - 1 comment

#95 - Add circularization as flag to FindKmer

Issue - State: open - Opened by Koeng101 3 months ago

#94 - Python fragmentation

Issue - State: open - Opened by Koeng101 3 months ago
Labels: enhancement

#93 - fragmentation non-optimal

Issue - State: open - Opened by Koeng101 3 months ago
Labels: bug

#92 - Add assembly

Pull Request - State: closed - Opened by Koeng101 3 months ago

#91 - added megamash docs

Pull Request - State: closed - Opened by Koeng101 3 months ago

#90 - megamash should include algorithm details

Issue - State: closed - Opened by Koeng101 4 months ago

#89 - codapi + dnadesign

Issue - State: open - Opened by Koeng101 4 months ago
Labels: enhancement

#88 - add pdoc documentation with github action publication

Pull Request - State: closed - Opened by Koeng101 4 months ago

#87 - add genbank parser to python

Pull Request - State: closed - Opened by Koeng101 4 months ago - 2 comments

#86 - C fastq

Pull Request - State: closed - Opened by Koeng101 4 months ago

#85 - remove go-cmp

Issue - State: open - Opened by Koeng101 4 months ago
Labels: enhancement

#84 - Errgroup int

Pull Request - State: closed - Opened by Koeng101 4 months ago

#83 - added kmer functionality, removed enzymemanager

Pull Request - State: closed - Opened by Koeng101 4 months ago

#82 - Add linear ligation as an option

Pull Request - State: closed - Opened by Koeng101 4 months ago

#81 - c

Pull Request - State: closed - Opened by Koeng101 4 months ago - 5 comments

#80 - C library

Issue - State: closed - Opened by Koeng101 4 months ago - 3 comments
Labels: enhancement

#79 - Protein data

Issue - State: closed - Opened by Koeng101 5 months ago - 1 comment
Labels: enhancement

#78 - Add tokenizer

Pull Request - State: open - Opened by Koeng101 5 months ago - 2 comments

#77 - remove CircularLigation and add Ligate

Pull Request - State: closed - Opened by Koeng101 6 months ago

#76 - Restriction Enzymes from Rebase

Issue - State: open - Opened by rmcl 8 months ago - 3 comments
Labels: enhancement

#75 - Add pseudo check

Issue - State: open - Opened by Koeng101 8 months ago

#74 - better barcoding

Pull Request - State: closed - Opened by Koeng101 8 months ago

#73 - Updates megamash to use int instead of uint for minimal count in case of -1

Pull Request - State: closed - Opened by Koeng101 8 months ago

#72 - Updated external to have bcftools

Pull Request - State: closed - Opened by Koeng101 8 months ago - 2 comments

#71 - fix bug 70

Pull Request - State: closed - Opened by Koeng101 8 months ago

#70 - PCR doesn

Issue - State: closed - Opened by Koeng101 8 months ago
Labels: bug

#69 - Replaced base64 with base58 in seqhash

Pull Request - State: closed - Opened by Koeng101 8 months ago

#68 - vcf

Issue - State: closed - Opened by Koeng101 9 months ago
Labels: enhancement

#67 - dual barcoding improvements

Pull Request - State: closed - Opened by Koeng101 9 months ago

#66 - Minimal API with AI

Pull Request - State: closed - Opened by Koeng101 9 months ago - 5 comments

#65 - Barcode calling using minimap2

Issue - State: open - Opened by Koeng101 9 months ago
Labels: enhancement

#64 - Megamash cannot call complicated sequences

Issue - State: open - Opened by Koeng101 10 months ago - 10 comments
Labels: enhancement

#63 - better sequencing

Pull Request - State: closed - Opened by Koeng101 10 months ago - 1 comment

#62 - Add workers

Pull Request - State: closed - Opened by Koeng101 10 months ago

#61 - improve megamash

Pull Request - State: closed - Opened by Koeng101 10 months ago

#60 - indexing

Pull Request - State: closed - Opened by Koeng101 10 months ago - 1 comment

#59 - add barcoding functions

Pull Request - State: closed - Opened by Koeng101 10 months ago

#58 - update go1.22.0

Pull Request - State: closed - Opened by Koeng101 10 months ago

#57 - fastqindex

Issue - State: closed - Opened by Koeng101 10 months ago - 1 comment
Labels: enhancement

#56 - Easy performance optimizations for MegaMash

Issue - State: closed - Opened by CamelCaseCam 10 months ago - 16 comments
Labels: enhancement

#55 - Merge BWT

Issue - State: open - Opened by Koeng101 11 months ago
Labels: enhancement

#54 - Workflow management

Issue - State: closed - Opened by Koeng101 11 months ago - 1 comment
Labels: enhancement

#53 - Megamash file

Issue - State: closed - Opened by Koeng101 11 months ago - 1 comment
Labels: enhancement

#52 - Better Megamash

Issue - State: closed - Opened by CamelCaseCam 11 months ago - 8 comments
Labels: enhancement

#51 - compressdna

Pull Request - State: closed - Opened by Koeng101 11 months ago - 8 comments

#50 - add megamash

Pull Request - State: closed - Opened by Koeng101 11 months ago

#49 - add sequencing functions

Pull Request - State: closed - Opened by Koeng101 11 months ago - 4 comments

#48 - Improve docs

Pull Request - State: closed - Opened by Koeng101 11 months ago

#47 - Samtools

Pull Request - State: closed - Opened by Koeng101 11 months ago - 1 comment

#46 - init minimap2

Pull Request - State: closed - Opened by Koeng101 11 months ago - 7 comments

#45 - slow5 version

Issue - State: open - Opened by Koeng101 11 months ago
Labels: enhancement

#44 - Move mash to align

Issue - State: closed - Opened by Koeng101 11 months ago - 1 comment
Labels: enhancement, help wanted, good first issue

#43 - Integrate kape

Issue - State: closed - Opened by Koeng101 11 months ago - 1 comment
Labels: blocked

#42 - Default codon tables

Issue - State: open - Opened by Koeng101 12 months ago - 1 comment
Labels: enhancement

#42 - Default codon tables

Issue - State: open - Opened by Koeng101 12 months ago
Labels: enhancement

#41 - PCR simulation should have circularity as an aspect of the sequence itself, not of the entire function

Issue - State: open - Opened by Koeng101 12 months ago - 1 comment
Labels: enhancement

#40 - Genbank improvements

Issue - State: open - Opened by Koeng101 12 months ago
Labels: enhancement

#40 - Genbank improvements

Issue - State: open - Opened by Koeng101 12 months ago - 1 comment
Labels: enhancement

#39 - Document LinearFold+mfe and make linters work

Issue - State: open - Opened by Koeng101 12 months ago - 1 comment
Labels: documentation

#39 - Document LinearFold+mfe and make linters work

Issue - State: open - Opened by Koeng101 12 months ago
Labels: documentation

#38 - linearfold

Pull Request - State: closed - Opened by Koeng101 12 months ago

#37 - Add Get feature, plus improve uniprot parser

Pull Request - State: closed - Opened by Koeng101 12 months ago - 1 comment

#37 - Add Get feature, plus improve uniprot parser

Pull Request - State: closed - Opened by Koeng101 12 months ago - 1 comment

#36 - Uniprot GET

Issue - State: closed - Opened by Koeng101 12 months ago
Labels: enhancement

#35 - Integrate linearfold

Issue - State: closed - Opened by Koeng101 12 months ago - 1 comment
Labels: enhancement

#35 - Integrate linearfold

Issue - State: closed - Opened by Koeng101 12 months ago - 1 comment
Labels: enhancement

#34 - Change WriterTo to make a builder first

Issue - State: open - Opened by Koeng101 12 months ago - 1 comment
Labels: enhancement

#33 - Removed murmur3

Pull Request - State: closed - Opened by Koeng101 12 months ago - 1 comment

#32 - patched start codon regression

Pull Request - State: closed - Opened by Koeng101 12 months ago

#32 - patched start codon regression

Pull Request - State: closed - Opened by Koeng101 12 months ago

#31 - OpenBSD tests

Pull Request - State: closed - Opened by Koeng101 12 months ago

#31 - OpenBSD tests

Pull Request - State: closed - Opened by Koeng101 12 months ago

#30 - deployment -> api

Pull Request - State: closed - Opened by Koeng101 12 months ago

#29 - murmur3 to crc32

Issue - State: closed - Opened by Koeng101 12 months ago
Labels: enhancement

#29 - murmur3 to crc32

Issue - State: closed - Opened by Koeng101 12 months ago
Labels: enhancement

#28 - Remove unneeded dependencies

Pull Request - State: closed - Opened by Koeng101 12 months ago - 4 comments

#28 - Remove unneeded dependencies

Pull Request - State: closed - Opened by Koeng101 12 months ago - 4 comments

#27 - Integrate parts library

Issue - State: closed - Opened by Koeng101 12 months ago - 1 comment
Labels: enhancement

#26 - Wikipedia paperqa

Issue - State: closed - Opened by Koeng101 12 months ago - 1 comment
Labels: enhancement

#25 - Add protein fragmentation

Pull Request - State: open - Opened by Koeng101 12 months ago

#25 - Add protein fragmentation

Pull Request - State: closed - Opened by Koeng101 12 months ago - 1 comment

#24 - Initial service

Pull Request - State: closed - Opened by Koeng101 12 months ago - 1 comment

#24 - Initial service

Pull Request - State: closed - Opened by Koeng101 12 months ago - 1 comment

#23 - Purged gff

Pull Request - State: closed - Opened by Koeng101 12 months ago

#23 - Purged gff

Pull Request - State: closed - Opened by Koeng101 12 months ago

#22 - Updated uniprot to be a part of the generic parsers

Pull Request - State: closed - Opened by Koeng101 12 months ago - 1 comment

#21 - Move all files to lib directory

Pull Request - State: closed - Opened by Koeng101 12 months ago

#20 - Uniprot API

Issue - State: closed - Opened by Koeng101 12 months ago - 1 comment
Labels: enhancement

#20 - Uniprot API

Issue - State: closed - Opened by Koeng101 12 months ago - 1 comment
Labels: enhancement

#19 - embed rebase database

Issue - State: closed - Opened by Koeng101 12 months ago - 1 comment
Labels: enhancement

#18 - minimap2 + samtools wasm

Issue - State: open - Opened by Koeng101 12 months ago - 1 comment
Labels: enhancement, help wanted

#17 - Fpbase parser

Issue - State: closed - Opened by Koeng101 12 months ago - 1 comment
Labels: enhancement

#16 - Plannotate recode

Issue - State: closed - Opened by Koeng101 12 months ago - 1 comment
Labels: enhancement

GitHub / koeng101/dnadesign issues and pull requests