kn-bibs/dotplot issues and pull requests

#54 - Increase code coverage (esp. of GUI) to 90%

Pull Request - State: closed - Opened by krassowski over 7 years ago - 1 comment

#53 - [proposition] Rewrite "readme" to rst

Issue - State: closed - Opened by krassowski about 8 years ago - 1 comment

#52 - Sequence label in matplotilb does not work well with window_size option

Issue - State: open - Opened by krassowski about 8 years ago
Labels: bug, matplotlib

#51 - Matplotlib

Pull Request - State: closed - Opened by kinga322 about 8 years ago - 6 comments

#50 - add shade characters to utf8 plotting

Pull Request - State: closed - Opened by maciosz about 8 years ago - 1 comment

#49 - Let user decide if sequence should be displayed

Issue - State: closed - Opened by krassowski about 8 years ago - 1 comment
Labels: easy

#48 - Matrices

Pull Request - State: closed - Opened by szymek2137 about 8 years ago - 1 comment

#47 - Matplotlib

Pull Request - State: closed - Opened by kinga322 about 8 years ago - 2 comments

#46 - Add "stringency" parameter to CLI (argument_parser.py)

Issue - State: closed - Opened by krassowski about 8 years ago
Labels: easy

#45 - Add options panel where a user can set parameters for plotter like "window size" or "stringency"

Issue - State: closed - Opened by krassowski about 8 years ago - 1 comment
Labels: medium, GUI

#44 - Use block elements from UTF-8 charset to display different shades of dotplot

Issue - State: closed - Opened by krassowski about 8 years ago - 1 comment
Labels: enhancement, easy

#43 - Attach an option allowing to use window-size from CLI #39

Pull Request - State: closed - Opened by krassowski about 8 years ago - 1 comment

#42 - Increase tests coverage to at least 75%

Issue - State: closed - Opened by krassowski about 8 years ago
Labels: meta

#41 - Moved repetitive code in to another function and added tests

Pull Request - State: closed - Opened by rmisutyte about 8 years ago - 1 comment

#40 - Add different substitution matrices for plotter

Issue - State: open - Opened by krassowski about 8 years ago - 1 comment
Labels: easy

#39 - Implement "window-size" for plotter

Issue - State: closed - Opened by krassowski about 8 years ago - 1 comment
Labels: medium

#38 - Fetch sequence by gene

Issue - State: open - Opened by krassowski about 8 years ago
Labels: medium, GUI

#37 - "Undo" option

Issue - State: open - Opened by krassowski about 8 years ago
Labels: hard, GUI

#36 - Added hints in chooser's text field

Pull Request - State: closed - Opened by bartma11 about 8 years ago - 1 comment

#35 - Add axes labels

Issue - State: closed - Opened by kinga322 about 8 years ago - 1 comment
Labels: matplotlib

#34 - Save plot to file

Issue - State: open - Opened by kinga322 about 8 years ago
Labels: matplotlib

#33 - Matplotlib

Pull Request - State: closed - Opened by kinga322 about 8 years ago

#32 - Add help/tutorial window to GUI

Issue - State: open - Opened by krassowski about 8 years ago
Labels: GUI

#31 - Add exemplar sequence identifiers to chooser

Issue - State: closed - Opened by krassowski about 8 years ago
Labels: medium, GUI

#30 - Clean dotplot.py and gui.py to raise its score in pylint to at least 7.5

Issue - State: open - Opened by maciosz about 8 years ago - 6 comments
Labels: easy

#29 - Graphical and command-line interface for sequence retrieval

Issue - State: closed - Opened by krassowski about 8 years ago - 1 comment
Labels: medium, GUI

#28 - Sequence

Pull Request - State: closed - Opened by kinga322 about 8 years ago - 1 comment

#27 - Show messages in status bar after file selection and plotting

Issue - State: closed - Opened by krassowski about 8 years ago - 1 comment
Labels: easy, GUI

#26 - Eliminate repetitive fragments of code in 'plotter.py'

Issue - State: closed - Opened by krassowski about 8 years ago - 1 comment
Labels: easy

#25 - Add basic description to built-in help

Issue - State: open - Opened by krassowski about 8 years ago
Labels: enhancement, easy

#24 - Add appropriate shebang to main file

Issue - State: closed - Opened by krassowski about 8 years ago
Labels: enhancement, easy

#23 - We need to be able to download sequences from various databases

Issue - State: closed - Opened by kkuczkowska over 8 years ago - 2 comments
Labels: enhancement, medium

#22 - Loading non-FASTA plain text files

Issue - State: closed - Opened by pknut over 8 years ago
Labels: medium

#21 - Reading multiple sequences from one fasta file

Issue - State: open - Opened by kinga322 over 8 years ago
Labels: enhancement, hard

#20 - Dotplot should be able to generate a heatmap

Issue - State: open - Opened by magickris93 over 8 years ago - 1 comment
Labels: hard, meta

#19 - Our program should interpret without us!

Issue - State: closed - Opened by Alria over 8 years ago
Labels: invalid

#18 - We should generate graphics

Issue - State: closed - Opened by maciosz over 8 years ago
Labels: enhancement

#17 - We need to have a licence

Issue - State: closed - Opened by krassowski over 8 years ago
Labels: bug, enhancement

#16 - README edit

Pull Request - State: closed - Opened by sienkie over 8 years ago

#15 - Drawer

Pull Request - State: closed - Opened by pjanek over 8 years ago

#14 - Sequence

Pull Request - State: closed - Opened by kinga322 over 8 years ago - 1 comment

#13 - Gui

Pull Request - State: closed - Opened by Behoston over 8 years ago - 1 comment

#12 - Let's use unicode characters for drawing

Issue - State: closed - Opened by krassowski over 8 years ago - 1 comment
Labels: enhancement

#11 - Plotter

Pull Request - State: closed - Opened by magickris93 over 8 years ago

#10 - Drawer

Pull Request - State: closed - Opened by pjanek over 8 years ago

#9 - Take open file instead of filename

Pull Request - State: closed - Opened by maciosz over 8 years ago

#8 - sequence take file instead of filename

Pull Request - State: closed - Opened by maciosz over 8 years ago

#7 - Gui

Pull Request - State: closed - Opened by krassowski over 8 years ago

#6 - Fix bug

Pull Request - State: closed - Opened by maciosz over 8 years ago

#5 - Fix format of input to fit sequence class

Pull Request - State: closed - Opened by pasliwa over 8 years ago

#4 - Plotter

Pull Request - State: closed - Opened by pasliwa over 8 years ago

#3 - Sequence

Pull Request - State: closed - Opened by maciosz over 8 years ago

#2 - Drawer

Pull Request - State: closed - Opened by pjanek over 8 years ago

#1 - Implemented ArgumentParser class

Pull Request - State: closed - Opened by Behoston over 8 years ago

GitHub / kn-bibs/dotplot issues and pull requests