Ecosyste.ms: Issues

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GitHub / kmhess/SoFiA-image-pipeline issues and pull requests

#100 - Dies if no SNR cube?

Issue - State: open - Opened by kmhess 2 months ago - 3 comments

#99 - Catalogue of molecules: query updated version

Issue - State: open - Opened by mctoribio 4 months ago

#98 - Improve dependencies, new python version

Pull Request - State: closed - Opened by lboschman 4 months ago - 2 comments

#97 - SIP may not work with Python 12 with current numpy restrictions

Issue - State: closed - Opened by kmhess 4 months ago - 1 comment
Labels: dependencies

#96 - Add redshift information to plots

Issue - State: open - Opened by kmhess 4 months ago
Labels: Good for ADP

#95 - Add DeCAPS among survey options?

Issue - State: closed - Opened by kmhess 4 months ago
Labels: enhancement

#94 - Error with plotting mom1 in matplotlib=3.8

Issue - State: closed - Opened by kmhess 5 months ago - 1 comment

#93 - convert in imagemagick deprecated

Issue - State: open - Opened by kmhess 5 months ago

#92 - Astroquery not able to retrieve survey images

Issue - State: closed - Opened by kmhess 5 months ago - 1 comment

#91 - remove pvextractor dependency

Issue - State: open - Opened by kmhess 5 months ago

#90 - Making moment-map2

Issue - State: closed - Opened by csuvas 5 months ago - 12 comments

#87 - check other extensions in user provided image?

Issue - State: open - Opened by kmhess 8 months ago

#86 - np.int removed in numpy 1.24

Issue - State: closed - Opened by kmhess 8 months ago

#85 - HSC among survey options?

Issue - State: open - Opened by kmhess about 1 year ago
Labels: enhancement

#84 - Saving fits file

Issue - State: closed - Opened by panstarrs over 1 year ago - 2 comments

#83 - No moment 2 map

Issue - State: closed - Opened by panstarrs over 1 year ago - 4 comments
Labels: enhancement

#82 - overlay position of sources

Issue - State: open - Opened by paoloserra over 1 year ago - 2 comments

#81 - SIP crashes if bmaj or bmin=0 in the cubelet headers

Issue - State: closed - Opened by kmhess over 1 year ago

#80 - fix #79

Pull Request - State: closed - Opened by paoloserra over 1 year ago

#79 - code crashes if the first HI contour of a source is NaN

Issue - State: closed - Opened by paoloserra over 1 year ago

#78 - user-defined combo file size limit

Issue - State: open - Opened by paoloserra over 1 year ago

#77 - Code doesn't catch spectral type if stored in SPECSYS3

Issue - State: closed - Opened by kmhess over 1 year ago
Labels: bug

#76 - Decals dr10

Issue - State: closed - Opened by healytwin1 almost 2 years ago - 4 comments

#75 - bug: image size for decals

Issue - State: closed - Opened by panstarrs almost 2 years ago - 1 comment

#74 - Molec

Pull Request - State: closed - Opened by kmhess almost 2 years ago

#73 - Redshift correction to surface brightness calculation

Issue - State: closed - Opened by kmhess almost 2 years ago

#72 - 800kB combo png limit + decals-dev

Pull Request - State: closed - Opened by paoloserra almost 2 years ago - 6 comments

#71 - bug -- velocity fields?

Issue - State: closed - Opened by mpatir about 2 years ago - 2 comments

#70 - Command line option to plot all HI contours on single image

Issue - State: open - Opened by kmhess about 2 years ago - 1 comment
Labels: Good for ADP

#69 - Usr color

Pull Request - State: open - Opened by kmhess about 2 years ago

#68 - Bump numpy from 1.21.0 to 1.22.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#66 - Allow overlay on WISE images

Issue - State: closed - Opened by kmhess over 2 years ago - 1 comment
Labels: enhancement

#64 - Should we plot a beam by default if no beam in header?

Issue - State: closed - Opened by kmhess over 2 years ago - 1 comment
Labels: question

#63 - No full spectrum if original data cube and catalog file names differ

Issue - State: closed - Opened by kmhess over 2 years ago - 2 comments

#62 - Bump pillow from 9.1.0 to 9.1.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#61 - PV along kinematical minor axis

Issue - State: closed - Opened by paoloserra over 2 years ago - 9 comments

#60 - Logic of -s option

Issue - State: closed - Opened by paoloserra over 2 years ago

#59 - Using user-supplied image and survey images

Issue - State: open - Opened by healytwin1 over 2 years ago - 1 comment

#58 - use HI J2000 wcs as base frame for all images

Pull Request - State: closed - Opened by healytwin1 over 2 years ago - 1 comment

#57 - do not regrid

Pull Request - State: closed - Opened by paoloserra over 2 years ago - 1 comment

#56 - detect single-channel sources & better contour plotting

Pull Request - State: closed - Opened by paoloserra over 2 years ago

#55 - do not regrid HI images & detect single-channel sources

Pull Request - State: closed - Opened by paoloserra over 2 years ago - 13 comments

#54 - detect single-chan sources and adjust their mom1 plotting

Pull Request - State: closed - Opened by paoloserra over 2 years ago - 1 comment

#53 - code crashes on single-channel source

Issue - State: closed - Opened by paoloserra over 2 years ago

#52 - process only selected sources

Pull Request - State: closed - Opened by paoloserra over 2 years ago

#51 - IndexError: list index out of range

Issue - State: closed - Opened by panstarrs over 2 years ago - 5 comments

#50 - only run pipeline for selected sources

Issue - State: closed - Opened by paoloserra over 2 years ago - 1 comment

#49 - Need a test cube in v_rad

Issue - State: closed - Opened by kmhess over 2 years ago - 7 comments

#48 - BUNIT='beam-1 Jy' conundrum.

Issue - State: open - Opened by spectram over 2 years ago - 1 comment

#47 - DevOps

Pull Request - State: closed - Opened by axshen over 2 years ago

#46 - Allow for catalog & images in Galactic coordinates

Issue - State: open - Opened by kmhess over 2 years ago - 3 comments

#45 - Problem when output.filename and output.directory from SoFiA are different from input

Issue - State: closed - Opened by healytwin1 over 2 years ago - 4 comments
Labels: bug

#44 - Global spectrum axis limits

Issue - State: closed - Opened by healytwin1 over 2 years ago - 3 comments

#43 - Add contours for absorption line sources in moment 0 maps

Issue - State: open - Opened by kmhess over 2 years ago - 13 comments
Labels: enhancement

#42 - Bump numpy from 1.20.2 to 1.21.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#41 - Add second color map above 3 sigma in pvd. #39

Pull Request - State: closed - Opened by kmhess over 2 years ago

#40 - Pvcontrast

Pull Request - State: closed - Opened by paoloserra over 2 years ago

#39 - Contrast in PVD

Issue - State: closed - Opened by paoloserra over 2 years ago - 3 comments

#38 - Masked spectrum not always made when original is given

Issue - State: closed - Opened by kmhess over 2 years ago - 1 comment

#37 - Optview

Pull Request - State: closed - Opened by paoloserra over 2 years ago

#36 - with user image and no survey, some images are not made

Issue - State: closed - Opened by paoloserra over 2 years ago
Labels: bug

#35 - Sometimes SIP fails to make the PVD of the mask

Issue - State: closed - Opened by paoloserra over 2 years ago - 12 comments

#34 - Grouping sources?

Issue - State: open - Opened by kmhess over 2 years ago - 1 comment
Labels: enhancement

#33 - Add cache=False attempt if download fails

Issue - State: closed - Opened by kmhess over 2 years ago - 4 comments

#32 - Make images without an HI cubelet, just mom0

Issue - State: closed - Opened by kmhess over 2 years ago - 1 comment
Labels: enhancement

#31 - improper handling of unit M/S by astropy

Issue - State: closed - Opened by vdhulst over 2 years ago - 10 comments

#30 - Sofia masks on PvDs

Issue - State: closed - Opened by mpatir over 2 years ago - 1 comment
Labels: enhancement

#29 - Fixed Y range for 1D spectra

Pull Request - State: closed - Opened by paoloserra over 2 years ago

#28 - Speed-up of code

Issue - State: closed - Opened by SoFiA-Admin over 2 years ago - 2 comments

#27 - Choice of iso-velocity contours

Issue - State: closed - Opened by paoloserra over 2 years ago - 1 comment

#26 - Direction of Y axis in PVD

Issue - State: closed - Opened by paoloserra over 2 years ago

#25 - HI contours label

Issue - State: closed - Opened by paoloserra over 2 years ago

#24 - Fixed Y range for 1D spectra

Issue - State: closed - Opened by paoloserra over 2 years ago - 1 comment

#23 - Direction of P axis in PVD

Issue - State: closed - Opened by paoloserra over 2 years ago - 3 comments

#22 - Y axis in km/s in PVD?

Issue - State: closed - Opened by paoloserra over 2 years ago

#21 - vmin,vmax for background images

Issue - State: closed - Opened by paoloserra over 2 years ago - 6 comments

#20 - Make images without specifying a survey to overlay HI data on

Issue - State: open - Opened by kmhess over 2 years ago - 3 comments

#19 - Allow user supplied background image

Pull Request - State: closed - Opened by paoloserra over 2 years ago - 4 comments

#18 - optional imagemagick/convert full path

Pull Request - State: closed - Opened by paoloserra over 2 years ago - 1 comment

#17 - Feature/refactor/autodoc

Pull Request - State: closed - Opened by lboschman over 2 years ago

#16 - Fix #14

Pull Request - State: closed - Opened by paoloserra over 2 years ago

#15 - Instead of regridding...make images using just wcs?

Issue - State: closed - Opened by kmhess over 2 years ago - 15 comments

#14 - Inconsistent 1D spectra

Issue - State: closed - Opened by paoloserra over 2 years ago - 6 comments

#13 - Show mom1 only inside lowest HI contour?

Issue - State: closed - Opened by paoloserra over 2 years ago - 2 comments

#12 - calculate base contour from snr image; fix #6

Pull Request - State: closed - Opened by paoloserra over 2 years ago

#11 - Add option of using imagemagick to combine images in program.

Issue - State: closed - Opened by kmhess over 2 years ago - 6 comments

#10 - Allow user to specify any SkyView available survey

Issue - State: closed - Opened by kmhess over 2 years ago - 16 comments

#9 - Running of program through a parameter file.

Issue - State: open - Opened by kmhess over 2 years ago - 1 comment
Labels: Good for ADP

#8 - Allow user supplied set of background images

Issue - State: open - Opened by kmhess over 2 years ago

#7 - Allow user supplied background image

Issue - State: closed - Opened by kmhess over 2 years ago

#6 - definition of base contour

Issue - State: closed - Opened by paoloserra over 2 years ago

#5 - small bug fix

Pull Request - State: closed - Opened by paoloserra over 2 years ago

#4 - Allow spectral axis to be velocity

Issue - State: closed - Opened by paoloserra over 2 years ago - 14 comments

#3 - User specified (minimum) image size

Issue - State: closed - Opened by kmhess over 2 years ago

#2 - Accept a user supplied beam

Issue - State: closed - Opened by kmhess over 2 years ago - 1 comment

#1 - Generalize to other spectral lines

Issue - State: open - Opened by kmhess over 2 years ago - 2 comments
Labels: Good for ADP