klindsay28/Newton-Krylov_OOC issues and pull requests

#86 - have hist_vars_for_precond_list return set (and rename)

Issue - State: open - Opened by klindsay28 about 1 year ago

#86 - have hist_vars_for_precond_list return set (and rename)

Issue - State: open - Opened by klindsay28 about 1 year ago

#85 - cleanup usage of extract_dimensions for appropriateness

Issue - State: open - Opened by klindsay28 over 1 year ago

#85 - cleanup usage of extract_dimensions for appropriateness

Issue - State: open - Opened by klindsay28 over 1 year ago

#84 - audit all occurances of netCDF4 Dataset to see if set_auto_mask is called or not appropriately

Issue - State: open - Opened by klindsay28 over 1 year ago

#84 - audit all occurances of netCDF4 Dataset to see if set_auto_mask is called or not appropriately

Issue - State: open - Opened by klindsay28 over 1 year ago

#83 - cime_pop stats _mean_nlon and _mean_nlat_nlon output wrong if tracer module tracer_cnt>1

Issue - State: closed - Opened by klindsay28 over 1 year ago

#83 - cime_pop stats _mean_nlon and _mean_nlat_nlon output wrong if tracer module tracer_cnt>1

Issue - State: closed - Opened by klindsay28 over 1 year ago

#82 - _apply_tracers_sflux_term in cime_pop's model_state should be in tracer_module_state

Issue - State: closed - Opened by klindsay28 over 1 year ago

#82 - _apply_tracers_sflux_term in cime_pop's model_state should be in tracer_module_state

Issue - State: closed - Opened by klindsay28 over 1 year ago

#81 - f-string commit 673fb4c8 broke cime_pop

Issue - State: closed - Opened by klindsay28 over 1 year ago

#81 - f-string commit 673fb4c8 broke cime_pop

Issue - State: closed - Opened by klindsay28 over 1 year ago

#80 - replace "_".join(...) with f-strings

Issue - State: closed - Opened by klindsay28 over 1 year ago

#80 - replace "_".join(...) with f-strings

Issue - State: closed - Opened by klindsay28 over 1 year ago

#79 - compute and apply scalef by region

Pull Request - State: closed - Opened by klindsay28 over 1 year ago

#79 - compute and apply scalef by region

Pull Request - State: closed - Opened by klindsay28 over 1 year ago

#78 - use f-strings in most expressions with string construction

Pull Request - State: closed - Opened by klindsay28 over 1 year ago

#78 - use f-strings in most expressions with string construction

Pull Request - State: closed - Opened by klindsay28 over 1 year ago

#77 - treat DeprecationWarning warnings as errors in ci scripts

Pull Request - State: closed - Opened by klindsay28 almost 2 years ago

#77 - treat DeprecationWarning warnings as errors in ci scripts

Pull Request - State: closed - Opened by klindsay28 almost 2 years ago

#76 - Reimplement regions

Pull Request - State: closed - Opened by klindsay28 about 2 years ago

#76 - Reimplement regions

Pull Request - State: closed - Opened by klindsay28 about 2 years ago

#75 - input directory not found if nk_ooc installed with pip install .

Issue - State: open - Opened by klindsay28 about 2 years ago

#75 - input directory not found if nk_ooc installed with pip install .

Issue - State: open - Opened by klindsay28 about 2 years ago

#74 - create call tree

Issue - State: open - Opened by klindsay28 about 2 years ago - 1 comment

#74 - create call tree

Issue - State: open - Opened by klindsay28 about 2 years ago - 1 comment

#73 - testing updates

Pull Request - State: closed - Opened by klindsay28 about 2 years ago

#73 - testing updates

Pull Request - State: closed - Opened by klindsay28 about 2 years ago

#72 - implementation of regions has potential to use wildly excessive amount of memory

Issue - State: closed - Opened by klindsay28 over 2 years ago

#72 - implementation of regions has potential to use wildly excessive amount of memory

Issue - State: closed - Opened by klindsay28 over 2 years ago

#71 - add "how do I recover from error" to FAQ

Issue - State: open - Opened by klindsay28 almost 3 years ago
Labels: documentation

#71 - add "how do I recover from error" to FAQ

Issue - State: open - Opened by klindsay28 almost 3 years ago
Labels: documentation

#70 - set_tracer_vals in model_state_base should raise an error if tracer_name is not found

Issue - State: closed - Opened by klindsay28 almost 3 years ago - 1 comment

#70 - set_tracer_vals in model_state_base should raise an error if tracer_name is not found

Issue - State: closed - Opened by klindsay28 almost 3 years ago - 1 comment

#69 - migrate ci from travis-ci to github actions

Pull Request - State: closed - Opened by klindsay28 about 3 years ago

#69 - migrate ci from travis-ci to github actions

Pull Request - State: closed - Opened by klindsay28 about 3 years ago

#68 - migrate CI from travis-ci to github actions

Issue - State: closed - Opened by klindsay28 about 3 years ago

#68 - migrate CI from travis-ci to github actions

Issue - State: closed - Opened by klindsay28 about 3 years ago

#67 - add git hash to file metadata in created files

Issue - State: open - Opened by klindsay28 over 3 years ago

#67 - add git hash to file metadata in created files

Issue - State: open - Opened by klindsay28 over 3 years ago

#66 - avoid code duplication between test_problem and py_driver_2d

Issue - State: open - Opened by klindsay28 over 3 years ago

#66 - avoid code duplication between test_problem and py_driver_2d

Issue - State: open - Opened by klindsay28 over 3 years ago

#65 - pyferret cannot read Newton_stats.nc file

Issue - State: closed - Opened by klindsay28 over 3 years ago

#65 - pyferret cannot read Newton_stats.nc file

Issue - State: closed - Opened by klindsay28 over 3 years ago

#64 - scalef applied to limit Newton increment is independent of region

Issue - State: closed - Opened by klindsay28 over 3 years ago

#64 - scalef applied to limit Newton increment is independent of region

Issue - State: closed - Opened by klindsay28 over 3 years ago

#63 - merge py_driver_2d

Pull Request - State: closed - Opened by klindsay28 over 3 years ago

#63 - merge py_driver_2d

Pull Request - State: closed - Opened by klindsay28 over 3 years ago

#62 - rename master branch

Issue - State: closed - Opened by klindsay28 over 3 years ago - 1 comment

#62 - rename master branch

Issue - State: closed - Opened by klindsay28 over 3 years ago - 1 comment

#61 - consider set_tracer_vals and set_tracer_vals_all methods return self

Issue - State: open - Opened by klindsay28 over 3 years ago - 1 comment

#61 - consider set_tracer_vals and set_tracer_vals_all methods return self

Issue - State: open - Opened by klindsay28 over 3 years ago - 1 comment

#60 - po4_ind in test_problem.phosphorus.write_hist_vars incorrect

Issue - State: closed - Opened by klindsay28 over 3 years ago
Labels: bug

#60 - po4_ind in test_problem.phosphorus.write_hist_vars incorrect

Issue - State: closed - Opened by klindsay28 over 3 years ago
Labels: bug

#59 - test_problem: depth_bounds not written to stats file

Issue - State: closed - Opened by klindsay28 over 3 years ago

#59 - test_problem: depth_bounds not written to stats file

Issue - State: closed - Opened by klindsay28 over 3 years ago

#58 - standardize/unify argument descriptions in function docstrings

Issue - State: open - Opened by klindsay28 over 3 years ago

#58 - standardize/unify argument descriptions in function docstrings

Issue - State: open - Opened by klindsay28 over 3 years ago

#57 - time units in test_problem model are inconsistent

Issue - State: closed - Opened by klindsay28 over 3 years ago

#57 - time units in test_problem model are inconsistent

Issue - State: closed - Opened by klindsay28 over 3 years ago

#56 - some code assumes that SpatialAxis is increasing and doesn't confirm this

Issue - State: open - Opened by klindsay28 over 3 years ago

#56 - some code assumes that SpatialAxis is increasing and doesn't confirm this

Issue - State: open - Opened by klindsay28 over 3 years ago

#55 - refactor vert_mix contribution to apply_precond_jacobian in test_problem

Issue - State: open - Opened by klindsay28 over 3 years ago

#54 - implement conservative remapping of mixing coefficient in vert_mix module

Issue - State: open - Opened by klindsay28 over 3 years ago
Labels: enhancement

#54 - implement conservative remapping of mixing coefficient in vert_mix module

Issue - State: open - Opened by klindsay28 over 3 years ago
Labels: enhancement

#53 - inappropriate usage of NotImplementedError

Issue - State: closed - Opened by klindsay28 over 3 years ago

#53 - inappropriate usage of NotImplementedError

Issue - State: closed - Opened by klindsay28 over 3 years ago

#52 - ability to run model_state.py standalone should be either exercised/tested or removed

Issue - State: open - Opened by klindsay28 over 3 years ago - 2 comments

#52 - ability to run model_state.py standalone should be either exercised/tested or removed

Issue - State: open - Opened by klindsay28 over 3 years ago - 2 comments

#51 - some pytest tests rely on travis_short.sh generated output

Issue - State: closed - Opened by klindsay28 over 3 years ago - 1 comment

#51 - some pytest tests rely on travis_short.sh generated output

Issue - State: closed - Opened by klindsay28 over 3 years ago - 1 comment

#50 - model specific cfg_override_args should be in model code, not share

Issue - State: closed - Opened by klindsay28 over 3 years ago

#50 - model specific cfg_override_args should be in model code, not share

Issue - State: closed - Opened by klindsay28 over 3 years ago

#49 - add stub implementations of _read_vals and dump methods in TracerModuleStateBase

Issue - State: closed - Opened by klindsay28 over 3 years ago

#49 - add stub implementations of _read_vals and dump methods in TracerModuleStateBase

Issue - State: closed - Opened by klindsay28 over 3 years ago

#48 - units for {tracername}_depth_int in test_problem not canonicalized

Issue - State: closed - Opened by klindsay28 about 4 years ago - 1 comment
Labels: bug

#48 - units for {tracername}_depth_int in test_problem not canonicalized

Issue - State: closed - Opened by klindsay28 about 4 years ago - 1 comment
Labels: bug

#47 - {ann,mon}_files_to_mean_file ignore cell_methods

Issue - State: open - Opened by klindsay28 over 4 years ago
Labels: bug

#46 - {ann,mon}_files_to_mean_file don't set time:bounds values appropriately

Issue - State: open - Opened by klindsay28 over 4 years ago
Labels: bug

#46 - {ann,mon}_files_to_mean_file don't set time:bounds values appropriately

Issue - State: open - Opened by klindsay28 over 4 years ago
Labels: bug

#45 - abort share.logging_config if filemode="w" and logging_fname exists

Issue - State: open - Opened by klindsay28 over 4 years ago
Labels: enhancement

#45 - abort share.logging_config if filemode="w" and logging_fname exists

Issue - State: open - Opened by klindsay28 over 4 years ago
Labels: enhancement

#44 - cime_pop: verify that rpointer_dir exists as a directory

Issue - State: closed - Opened by klindsay28 over 4 years ago - 2 comments
Labels: enhancement

#44 - cime_pop: verify that rpointer_dir exists as a directory

Issue - State: closed - Opened by klindsay28 over 4 years ago - 2 comments
Labels: enhancement

#43 - audit list comprehensions for potential replacement by generator expression

Issue - State: open - Opened by klindsay28 over 4 years ago
Labels: enhancement

#43 - audit list comprehensions for potential replacement by generator expression

Issue - State: open - Opened by klindsay28 over 4 years ago
Labels: enhancement

#42 - surface fluxes depending on another tracer getting omitted in cime_pop model

Issue - State: closed - Opened by klindsay28 over 4 years ago

#42 - surface fluxes depending on another tracer getting omitted in cime_pop model

Issue - State: closed - Opened by klindsay28 over 4 years ago

#41 - append_tracer_names_per_precond_matrix is not pythonic

Issue - State: closed - Opened by klindsay28 over 4 years ago - 1 comment

#41 - append_tracer_names_per_precond_matrix is not pythonic

Issue - State: closed - Opened by klindsay28 over 4 years ago - 1 comment

#40 - Jacobian matrix preconditioner option in matrix `base` override options for specific matrices for options in lists

Issue - State: closed - Opened by klindsay28 over 4 years ago
Labels: bug

#40 - Jacobian matrix preconditioner option in matrix `base` override options for specific matrices for options in lists

Issue - State: closed - Opened by klindsay28 over 4 years ago
Labels: bug

#39 - check for unused cfg variables

Issue - State: closed - Opened by klindsay28 over 4 years ago
Labels: enhancement

#39 - check for unused cfg variables

Issue - State: closed - Opened by klindsay28 over 4 years ago
Labels: enhancement

#38 - framework for external packages that peform time integration

Issue - State: open - Opened by klindsay28 over 4 years ago
Labels: enhancement

#38 - framework for external packages that peform time integration

Issue - State: open - Opened by klindsay28 over 4 years ago
Labels: enhancement

#37 - add option to omit datestring from logging output

Issue - State: closed - Opened by klindsay28 over 4 years ago - 1 comment
Labels: enhancement

#37 - add option to omit datestring from logging output

Issue - State: closed - Opened by klindsay28 over 4 years ago - 1 comment
Labels: enhancement

#36 - separate conda environments into use and development/testing

Issue - State: open - Opened by klindsay28 over 4 years ago - 2 comments
Labels: enhancement

#36 - separate conda environments into use and development/testing

Issue - State: open - Opened by klindsay28 over 4 years ago - 2 comments
Labels: enhancement

GitHub / klindsay28/Newton-Krylov_OOC issues and pull requests