klamt-lab/autopacmen issues and pull requests

#30 - Version 0.6.3

Pull Request - State: closed - Opened by Paulocracy 3 months ago

#29 - what about ModelSEED ?

Issue - State: open - Opened by hariszaf 3 months ago - 1 comment

#28 - PERFORMANCE: `create_smoment_model_reaction_wise_with_sbml` gets bogged down in recent cobrapy release

Issue - State: open - Opened by yaccos over 1 year ago - 1 comment

#27 - Malformed enzyme stoichiometry spreadsheet

Issue - State: closed - Opened by yaccos over 1 year ago - 2 comments

#26 - Potential bug in k-cat lookup

Issue - State: closed - Opened by yaccos over 1 year ago - 1 comment

#25 - UniProt API Update

Pull Request - State: closed - Opened by yaccos over 1 year ago - 1 comment

#24 - Uniprot API change

Issue - State: closed - Opened by yaccos over 1 year ago - 1 comment

#23 - get_reactions_kcat_mapping error with Salmonella species

Issue - State: open - Opened by FraserAndrews7 about 2 years ago - 1 comment

#22 - Error in modeling_create_smoment_model.py

Issue - State: closed - Opened by arendma over 2 years ago - 2 comments

#21 - fix/word_vardec

Pull Request - State: closed - Opened by arendma almost 3 years ago

#20 - UnboundLocalError in parse_brend_textfile.py

Issue - State: closed - Opened by arendma almost 3 years ago - 1 comment

#19 - Fix typo thanks to @emikar ; see #13

Pull Request - State: closed - Opened by Paulocracy almost 3 years ago

#18 - Fix for bug in organism name parsing

Pull Request - State: closed - Opened by voidsailor almost 3 years ago - 1 comment

#17 - bug in BRENDA parsing

Issue - State: closed - Opened by voidsailor almost 3 years ago

#16 - bugfix for writing of gene product names

Pull Request - State: closed - Opened by voidsailor almost 3 years ago - 1 comment

#15 - enzyme names ore not written correctly to stoichiometry excel sheet

Issue - State: closed - Opened by voidsailor almost 3 years ago - 3 comments

#14 - fraction of unmeasured proteins in model compared to all unmatched proteins

Issue - State: closed - Opened by voidsailor about 3 years ago - 1 comment

#13 - Enzyme pool reported as mmol/gDW in print

Issue - State: closed - Opened by emikar over 3 years ago - 1 comment

#12 - Reactions with isoenzymes are not split correctly if proteomics data is provided

Issue - State: closed - Opened by diana-sz almost 4 years ago - 1 comment

#11 - get_initial_spreadsheets does not correctly create enzyme_stoichiometries.xlsx file

Issue - State: closed - Opened by diana-sz almost 4 years ago - 2 comments

#10 - Fixing protein mapping bug

Pull Request - State: closed - Opened by yaccos about 4 years ago

#9 - Amino acids ambiguties are not handled correctly

Issue - State: closed - Opened by yaccos about 4 years ago - 1 comment

#8 - Procedure for protein mass determination

Issue - State: closed - Opened by yaccos about 4 years ago - 2 comments

#7 - Add default argument to get_reactions_kcat_mapping

Issue - State: closed - Opened by yaccos over 4 years ago - 1 comment

#6 - Handling of missing Sabio-RK entries

Issue - State: closed - Opened by yaccos over 4 years ago - 2 comments

#5 - Error in data_parse_brenda_textfile.py