kitzeslab/opensoundscape issues and pull requests

#809 - automatically use mps if available

Pull Request - State: closed - Opened by sammlapp over 1 year ago

#808 - dont log_graph in wandb.watch

Pull Request - State: closed - Opened by sammlapp over 1 year ago

#807 - pick a nicer sample for gradcam demo in training notebook

Issue - State: open - Opened by sammlapp over 1 year ago
Labels: docs

#806 - Issue 789 per class metrics

Pull Request - State: closed - Opened by sammlapp over 1 year ago

#805 - Issue 779 load model helpful error message

Pull Request - State: closed - Opened by sammlapp over 1 year ago

#804 - resolve #792 no default shape

Pull Request - State: closed - Opened by sammlapp over 1 year ago

#803 - Give a useful error message if Preprocessor.forward receives DataFrame instead of Series

Issue - State: closed - Opened by sammlapp over 1 year ago - 1 comment
Labels: resolved_in_develop

#802 - resolve MelSpectrogram has all -inf values #794

Pull Request - State: closed - Opened by sammlapp over 1 year ago

#801 - add "example usage" in docstrings

Issue - State: open - Opened by sammlapp over 1 year ago
Labels: discuss, docs

#800 - add troubleshooting page to docs

Issue - State: open - Opened by sammlapp over 1 year ago
Labels: discuss, docs

#799 - add fine-tuning tutorial

Issue - State: closed - Opened by sammlapp over 1 year ago
Labels: docs, resolved_in_develop

#798 - add linting to our CI workflow

Issue - State: open - Opened by sammlapp over 1 year ago
Labels: discuss, resolved_in_branch

#797 - Add tutorial for opso preprocessing -> YOLO v8 Object detection

Issue - State: open - Opened by sammlapp over 1 year ago - 2 comments
Labels: docs

#796 - cryptic preprocessing error if Spectrogram.bandpass Action receives MelSpectrogram object

Issue - State: closed - Opened by sammlapp over 1 year ago - 1 comment

#795 - Use config yml file for model training: demo

Issue - State: closed - Opened by sammlapp over 1 year ago - 7 comments
Labels: discuss, docs

#794 - MelSpectrogram has all -inf values

Issue - State: closed - Opened by sammlapp over 1 year ago
Labels: bug, resolved_in_develop

#793 - should Spectrogram values only be clipped to .decibel_limits during .plot() and .to_image()?

Issue - State: closed - Opened by sammlapp over 1 year ago - 2 comments
Labels: resolved_in_develop

#792 - change default sample shape of SpectrogramPreprocessor to None

Issue - State: closed - Opened by sammlapp over 1 year ago
Labels: resolved_in_develop

#791 - make preprocessor default behavior no augmentation

Issue - State: closed - Opened by sammlapp over 1 year ago - 1 comment

#790 - make it easier to use opensoundscape preprocessing with pytorch

Issue - State: closed - Opened by sammlapp over 1 year ago - 1 comment
Labels: docs, resolved_in_develop

#789 - add AP and AU_ROC for per-class metrics

Issue - State: closed - Opened by sammlapp over 1 year ago
Labels: in_progress, resolved_in_develop

#788 - log current epoch to wandb during training

Issue - State: closed - Opened by sammlapp over 1 year ago - 2 comments
Labels: feature request, module:wandb

#787 - wandb complains if you continue training a model

Issue - State: closed - Opened by sammlapp over 1 year ago - 2 comments
Labels: bug, resolved_in_develop, module:wandb

#786 - Saving a model in old OpSo version and loading it in new version.

Issue - State: closed - Opened by louisfh over 1 year ago - 4 comments
Labels: discuss, docs, resolved_in_develop

#785 - Bump certifi from 2023.5.7 to 2023.7.22

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#784 - BoxedAnnotations() doesn't create one-hot labels DataFrame for empty Raven selections file

Issue - State: closed - Opened by rhine3 over 1 year ago - 2 comments
Labels: bug, resolved_in_develop, module:annotation

#783 - Feat localize parallelize

Pull Request - State: closed - Opened by louisfh over 1 year ago - 1 comment

#782 - Make documentation for audio.estimate_delay clear that audio.estimate_delay(a,b) may not be equal to -audio.estimate_delay(b,a)

Issue - State: closed - Opened by louisfh over 1 year ago - 1 comment
Labels: resolved_in_develop

#781 - No value for argument `max_delay` in method call in SpatialEvent.estimate_location

Issue - State: closed - Opened by louisfh over 1 year ago
Labels: bug, resolved_in_develop

#780 - Update tutorial related to loading models created with old opso versions

Issue - State: closed - Opened by lmc150 over 1 year ago
Labels: docs, resolved_in_develop

#779 - Raise warning when CNN.load_model() is used for a model object was saved in a different OpenSoundscape version

Issue - State: closed - Opened by louisfh over 1 year ago - 2 comments
Labels: resolved_in_develop

#778 - Preprocessing error if start_time is an np.int64

Issue - State: closed - Opened by louisfh over 1 year ago - 5 comments
Labels: bug, resolved_in_develop

#777 - DeprecationWarning when calling Spectrogram.plot()

Issue - State: closed - Opened by louisfh over 1 year ago - 1 comment
Labels: resolved_in_develop

#776 - automatically use MPS if available

Issue - State: closed - Opened by sammlapp over 1 year ago
Labels: resolved_in_develop, system:mps

#775 - ResourceWarning: Implicitly cleaning up <TemporaryDirectory '/tmp/tmp1k41qlgewandb'>

Issue - State: closed - Opened by louisfh over 1 year ago - 6 comments
Labels: resolved_in_develop, dependencies

#774 - Slow CNN Training and Inference in 0.9.0 onwards

Issue - State: closed - Opened by louisfh over 1 year ago - 2 comments
Labels: discuss

#774 - Slow CNN Training and Inference in 0.9.0 onwards

Issue - State: closed - Opened by louisfh over 1 year ago - 2 comments
Labels: discuss

#773 - Set max-delay on a per-TDOA estimation basis in Localization pipeline

Issue - State: open - Opened by louisfh over 1 year ago
Labels: module:localization

#772 - Bandpass_ranges warning when extra classes listed - SynchronizedRecorderArray.localize_detections

Issue - State: closed - Opened by louisfh over 1 year ago
Labels: resolved_in_develop

#771 - allow sparse label representation for training/evaluation of CNN

Issue - State: closed - Opened by sammlapp over 1 year ago - 2 comments
Labels: feature request, resolved_in_develop, performance, module:ml

#771 - allow sparse label representation for training/evaluation of CNN

Issue - State: open - Opened by sammlapp over 1 year ago - 2 comments
Labels: feature request, resolved_in_develop, performance, module:ml

#770 - one_hot_clip_labels is slow

Issue - State: closed - Opened by sammlapp over 1 year ago - 8 comments
Labels: high priority, resolved_in_develop, module:annotation, performance

#769 - Raven file not retained in BoxedAnnotations if keep_extra_columns=False

Issue - State: closed - Opened by sammlapp over 1 year ago - 3 comments
Labels: bug, high priority, resolved_in_develop

#768 - move tensors to cpu when creating CAM objects

Issue - State: closed - Opened by sammlapp over 1 year ago
Labels: bug, high priority, resolved_in_develop

#767 - add tqdm to CNN.predict()

Issue - State: closed - Opened by sammlapp over 1 year ago - 3 comments
Labels: feature request, resolved_in_develop

#766 - COCO annotation format integration

Issue - State: open - Opened by sammlapp over 1 year ago
Labels: feature request, module:annotation

#764 - crowsetta integration

Pull Request - State: closed - Opened by sammlapp over 1 year ago

#762 - consider zero-centering all signals before cc

Issue - State: closed - Opened by sammlapp over 1 year ago - 1 comment
Labels: discuss, module:localization

#761 - Consider adding/changing SpatialEvent attributes to contain a datetime timestamp

Issue - State: closed - Opened by louisfh over 1 year ago - 2 comments
Labels: resolved_in_develop, module:localization

#761 - Consider adding/changing SpatialEvent attributes to contain a datetime timestamp

Issue - State: closed - Opened by louisfh over 1 year ago - 2 comments
Labels: resolved_in_develop, module:localization

#754 - Overlay on selected samples

Issue - State: closed - Opened by sammlapp over 1 year ago - 1 comment
Labels: feature request, resolved_in_develop, module:preprocessing

#751 - Change the way 'edge of audio' in the localization pipeline is handled

Issue - State: closed - Opened by louisfh over 1 year ago - 2 comments
Labels: resolved_in_develop

#749 - Crowsetta integration

Issue - State: closed - Opened by sammlapp over 1 year ago - 5 comments
Labels: feature request, resolved_in_develop

#735 - Annotation column selection in BoxedAnnotations.from_raven_files

Issue - State: open - Opened by syunkova over 1 year ago

#734 - signal_processing.tdoa redefines 'signal' in function scope

Issue - State: open - Opened by louisfh almost 2 years ago

#733 - Bump requests from 2.28.1 to 2.31.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#732 - ModuleNotFoundError: No module named 'soxr'

Issue - State: closed - Opened by louisfh almost 2 years ago - 3 comments

#730 - Add method in tutorial to transition from loading in raven annotations to using them as training data

Issue - State: closed - Opened by lydiakatsis almost 2 years ago - 3 comments
Labels: resolved_in_develop

#729 - Path to files in "beginner friendly training" tutorial does not work

Issue - State: open - Opened by louisfh almost 2 years ago

#728 - Increase tolerance of Audio too short warning

Pull Request - State: open - Opened by louisfh almost 2 years ago

#727 - AudioSample default argument values cause error when repr called.

Issue - State: open - Opened by louisfh almost 2 years ago
Labels: bug

#726 - RuntimeError: Pin memory thread exited unexpectedly

Issue - State: open - Opened by louisfh almost 2 years ago - 12 comments
Labels: discuss, high priority, resolved_in_develop

#725 - Make SPEED_OF_SOUND a class attribute instead of module/global variable

Issue - State: closed - Opened by louisfh almost 2 years ago - 5 comments
Labels: discuss, resolved_in_develop, module:localization

#724 - Issue 723 gcc tdoa

Pull Request - State: open - Opened by louisfh almost 2 years ago

#723 - Fix bias in gcc/tdoa estimation

Issue - State: open - Opened by louisfh almost 2 years ago - 1 comment
Labels: resolved_in_branch

#722 - Fix SpatialEvent tdoa residuals

Pull Request - State: closed - Opened by louisfh almost 2 years ago - 1 comment

#721 - UserWarning: Audio object is shorter than requested duration

Issue - State: open - Opened by louisfh almost 2 years ago
Labels: resolved_in_branch

#720 - consider using online files in tutorials

Issue - State: closed - Opened by sammlapp almost 2 years ago - 4 comments
Labels: docs, resolved_in_develop

#719 - pd.Series append is removed in pandas 2.0

Issue - State: open - Opened by sammlapp almost 2 years ago
Labels: deprecation

#718 - add documentation for using Google Colab in "installation"

Issue - State: open - Opened by sammlapp almost 2 years ago - 1 comment

#717 - support python 3.10

Issue - State: open - Opened by sammlapp almost 2 years ago - 1 comment

#716 - change how we evaluate multi_target_models

Issue - State: closed - Opened by louisfh almost 2 years ago - 7 comments
Labels: resolved_in_develop

#715 - remove argument 'radius' from signalprocessing.gcc

Issue - State: open - Opened by louisfh almost 2 years ago
Labels: resolved_in_branch

#714 - Make package available on conda

Issue - State: open - Opened by louisfh almost 2 years ago - 6 comments
Labels: feature request

#713 - for metadata values, replace empty string with space

Pull Request - State: open - Opened by sammlapp almost 2 years ago - 1 comment

#712 - SynchronizedRecorderArray.estimate_locations assumes names for the levels of the multi-index of the detections dataframe

Issue - State: closed - Opened by louisfh almost 2 years ago - 5 comments
Labels: high priority, module:localization

GitHub / kitzeslab/opensoundscape issues and pull requests