Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / kitzeslab/opensoundscape issues and pull requests

#772 - Bandpass_ranges warning when extra classes listed - SynchronizedRecorderArray.localize_detections

Issue - State: closed - Opened by louisfh about 1 year ago
Labels: resolved_in_develop

#771 - allow sparse label representation for training/evaluation of CNN

Issue - State: open - Opened by sammlapp about 1 year ago - 2 comments
Labels: feature request, resolved_in_develop, performance, module:ml

#771 - allow sparse label representation for training/evaluation of CNN

Issue - State: open - Opened by sammlapp about 1 year ago - 2 comments
Labels: feature request, resolved_in_develop, performance, module:ml

#770 - one_hot_clip_labels is slow

Issue - State: open - Opened by sammlapp about 1 year ago - 8 comments
Labels: high priority, resolved_in_develop, module:annotation, performance

#769 - Raven file not retained in BoxedAnnotations if keep_extra_columns=False

Issue - State: closed - Opened by sammlapp about 1 year ago - 3 comments
Labels: bug, high priority, resolved_in_develop

#768 - move tensors to cpu when creating CAM objects

Issue - State: closed - Opened by sammlapp about 1 year ago
Labels: bug, high priority, resolved_in_develop

#767 - add tqdm to CNN.predict()

Issue - State: closed - Opened by sammlapp about 1 year ago - 3 comments
Labels: feature request, resolved_in_develop

#766 - COCO annotation format integration

Issue - State: open - Opened by sammlapp about 1 year ago
Labels: feature request

#764 - crowsetta integration

Pull Request - State: closed - Opened by sammlapp over 1 year ago

#762 - consider zero-centering all signals before cc

Issue - State: closed - Opened by sammlapp over 1 year ago - 1 comment
Labels: discuss, module:localization

#761 - Consider adding/changing SpatialEvent attributes to contain a datetime timestamp

Issue - State: open - Opened by louisfh over 1 year ago - 2 comments
Labels: resolved_in_branch, module:localization

#761 - Consider adding/changing SpatialEvent attributes to contain a datetime timestamp

Issue - State: open - Opened by louisfh over 1 year ago - 2 comments
Labels: resolved_in_develop, module:localization

#754 - Overlay on selected samples

Issue - State: closed - Opened by sammlapp over 1 year ago - 1 comment
Labels: feature request, resolved_in_develop, module:preprocessing

#751 - Change the way 'edge of audio' in the localization pipeline is handled

Issue - State: closed - Opened by louisfh over 1 year ago - 2 comments
Labels: resolved_in_develop

#749 - Crowsetta integration

Issue - State: open - Opened by sammlapp over 1 year ago - 5 comments
Labels: feature request, resolved_in_develop

#733 - Bump requests from 2.28.1 to 2.31.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#732 - ModuleNotFoundError: No module named 'soxr'

Issue - State: closed - Opened by louisfh over 1 year ago - 3 comments

#730 - Add method in tutorial to transition from loading in raven annotations to using them as training data

Issue - State: closed - Opened by lydiakatsis over 1 year ago - 3 comments
Labels: resolved_in_develop

#728 - Increase tolerance of Audio too short warning

Pull Request - State: open - Opened by louisfh over 1 year ago

#727 - AudioSample default argument values cause error when __repr__ called.

Issue - State: open - Opened by louisfh over 1 year ago
Labels: bug

#726 - RuntimeError: Pin memory thread exited unexpectedly

Issue - State: open - Opened by louisfh over 1 year ago - 12 comments
Labels: discuss, high priority, resolved_in_develop

#725 - Make SPEED_OF_SOUND a class attribute instead of module/global variable

Issue - State: open - Opened by louisfh over 1 year ago - 5 comments
Labels: discuss, resolved_in_branch, module:localization

#724 - Issue 723 gcc tdoa

Pull Request - State: open - Opened by louisfh over 1 year ago

#723 - Fix bias in gcc/tdoa estimation

Issue - State: open - Opened by louisfh over 1 year ago - 1 comment
Labels: resolved_in_branch

#722 - Fix SpatialEvent tdoa residuals

Pull Request - State: closed - Opened by louisfh over 1 year ago - 1 comment

#721 - UserWarning: Audio object is shorter than requested duration

Issue - State: open - Opened by louisfh over 1 year ago
Labels: resolved_in_branch

#720 - consider using online files in tutorials

Issue - State: closed - Opened by sammlapp over 1 year ago - 4 comments
Labels: docs, resolved_in_develop

#719 - pd.Series append is removed in pandas 2.0

Issue - State: open - Opened by sammlapp over 1 year ago
Labels: deprecation

#718 - add documentation for using Google Colab in "installation"

Issue - State: open - Opened by sammlapp over 1 year ago - 1 comment

#717 - support python 3.10

Issue - State: open - Opened by sammlapp over 1 year ago - 1 comment

#716 - change how we evaluate multi_target_models

Issue - State: closed - Opened by louisfh over 1 year ago - 7 comments
Labels: resolved_in_develop

#715 - remove argument 'radius' from signalprocessing.gcc

Issue - State: open - Opened by louisfh over 1 year ago
Labels: resolved_in_branch

#714 - Make package available on conda

Issue - State: open - Opened by louisfh over 1 year ago - 6 comments
Labels: feature request

#713 - for metadata values, replace empty string with space

Pull Request - State: open - Opened by sammlapp over 1 year ago - 1 comment

#712 - SynchronizedRecorderArray.estimate_locations assumes names for the levels of the multi-index of the detections dataframe

Issue - State: closed - Opened by louisfh over 1 year ago - 5 comments
Labels: high priority, module:localization

#710 - __str__ and __repr__ methods for localization classes

Issue - State: open - Opened by louisfh over 1 year ago - 2 comments

#709 - LibsndfileError when saving audio objects

Issue - State: open - Opened by louisfh over 1 year ago - 5 comments
Labels: resolved_in_branch

#708 - Warning: Xing stream size off by more than 1%, fuzzy seeking may be even more fuzzy than by design!

Issue - State: open - Opened by louisfh over 1 year ago - 8 comments
Labels: blocked

#707 - Inconsistencies in Tutorials

Issue - State: open - Opened by syunkova over 1 year ago - 1 comment
Labels: docs

#706 - can we avoid opencv dependency?

Issue - State: open - Opened by sammlapp over 1 year ago - 1 comment
Labels: wontfix, dependencies

#705 - SpatialEvent Class inconsistencies in methods.

Issue - State: open - Opened by louisfh over 1 year ago - 2 comments
Labels: bug, high priority

#704 - Bump ipython from 7.34.0 to 8.10.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#703 - add tests for localization module

Issue - State: open - Opened by sammlapp over 1 year ago
Labels: module:localization, testing

#702 - v0.9.0

Pull Request - State: closed - Opened by sammlapp over 1 year ago

#701 - Reconsider solution choice in soundfinder

Issue - State: open - Opened by sammlapp over 1 year ago - 1 comment
Labels: discuss, high priority, module:localization

#700 - consider changing detections format in localization branch

Issue - State: closed - Opened by sammlapp over 1 year ago - 5 comments
Labels: module:localization

#699 - show_tensor_grid broken in develop

Issue - State: closed - Opened by sammlapp over 1 year ago

#698 - uNET or other image-segmentation

Issue - State: open - Opened by sammlapp over 1 year ago
Labels: feature request

#697 - Feat refact localizer

Pull Request - State: closed - Opened by louisfh over 1 year ago

#696 - feature: limit the range of the cc offset to only a relevant range

Issue - State: open - Opened by sammlapp over 1 year ago
Labels: feature request, module:localization

#695 - Audio.extend raises error if length < duration

Issue - State: open - Opened by sammlapp over 1 year ago
Labels: bug

#694 - Consider implementing sub-band GCC

Issue - State: open - Opened by sammlapp over 1 year ago
Labels: feature request, module:localization

#693 - add gcc (generalized cross correlation) function and tests

Pull Request - State: closed - Opened by louisfh over 1 year ago

#692 - show_colorbar in Spectrogram.plot lacks units

Issue - State: closed - Opened by sammlapp over 1 year ago - 1 comment

#691 - Audio class display and from_url

Pull Request - State: closed - Opened by sammlapp over 1 year ago

#690 - Issue 679 retain metadata when using Audio methods

Pull Request - State: closed - Opened by sammlapp over 1 year ago

#689 - warn usr if load_model loads model of old version resolves #661

Pull Request - State: closed - Opened by sammlapp over 1 year ago

#688 - Resolves #579 boxed annotations

Pull Request - State: closed - Opened by sammlapp over 1 year ago

#687 - Model predictions on data with a different `sample_rate`

Issue - State: closed - Opened by charleygros over 1 year ago - 3 comments

#686 - Refactor modules

Pull Request - State: closed - Opened by sammlapp over 1 year ago

#685 - add tests for `cam` module

Issue - State: open - Opened by sammlapp over 1 year ago
Labels: testing

#684 - add tests for `loss` module

Issue - State: open - Opened by sammlapp over 1 year ago
Labels: testing

#683 - implement save_torch_dict and load_torch_dict

Pull Request - State: closed - Opened by sammlapp over 1 year ago

#682 - change default resample type to 'soxr_hq'

Pull Request - State: closed - Opened by sammlapp over 1 year ago

#681 - Update authors list in pyproject.toml

Issue - State: closed - Opened by rhine3 over 1 year ago - 1 comment
Labels: resolved_in_develop

#680 - Bump sentry-sdk from 1.12.1 to 1.14.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#679 - Some Audio functions erase Audio object metadata

Issue - State: closed - Opened by syunkova over 1 year ago
Labels: bug

#676 - Class activation maps

Pull Request - State: closed - Opened by sammlapp over 1 year ago

#675 - Implement wandb.watch in CNN.train()

Pull Request - State: closed - Opened by sammlapp over 1 year ago

#674 - [Dependency] `resampy`

Issue - State: closed - Opened by jatinkhilnani over 1 year ago - 1 comment
Labels: bug, high priority

#673 - when training efficientnet_b4: aten:histc not implemented for MPS

Issue - State: open - Opened by sammlapp over 1 year ago - 2 comments
Labels: system:mps

#672 - "No safe samples" exception in SafeDataset should include traceback of (last?) error

Issue - State: closed - Opened by sammlapp over 1 year ago
Labels: high priority, resolved_in_develop

#671 - change immutable class implementation

Issue - State: open - Opened by sammlapp over 1 year ago - 4 comments
Labels: discuss

#670 - Localization pipeline

Pull Request - State: closed - Opened by sammlapp over 1 year ago

#669 - provide valid frozen environments (yml)

Issue - State: open - Opened by sammlapp over 1 year ago - 1 comment
Labels: high priority

#668 - option to log gradCam visualizations to wandb

Issue - State: closed - Opened by sammlapp over 1 year ago
Labels: feature request, resolved_in_develop

#666 - training with clip_df on unsplit audio: need example in tutorials

Issue - State: closed - Opened by sammlapp over 1 year ago - 1 comment
Labels: docs

#665 - Add lowpass and highpass filter functions to Audio class

Issue - State: closed - Opened by syunkova over 1 year ago
Labels: feature request, resolved_in_develop

#664 - Librosa FutureWarning for get_duration

Issue - State: closed - Opened by louisfh over 1 year ago - 1 comment
Labels: good first issue, resolved_in_develop, deprecation

#663 - Validation score reported even if no validation_df passed to CNN.train()

Issue - State: closed - Opened by louisfh over 1 year ago - 3 comments
Labels: bug

#662 - DeprecationWarning Pandas

Issue - State: closed - Opened by louisfh over 1 year ago - 1 comment
Labels: resolved_in_develop, deprecation

#661 - Make clear that model.save and load_model do not work across versions

Issue - State: closed - Opened by louisfh over 1 year ago - 1 comment
Labels: docs, resolved_in_develop

#660 - rename audiomoth module to aru

Issue - State: closed - Opened by sammlapp over 1 year ago
Labels: rename

#659 - Rename torch module

Issue - State: closed - Opened by louisfh over 1 year ago
Labels: rename

#658 - 578: tutorial download links

Pull Request - State: closed - Opened by syunkova over 1 year ago

#657 - Poetry Lock file missing pillow wheel build

Issue - State: closed - Opened by louisfh over 1 year ago - 2 comments

#656 - download link in CNN tutorial contains outdated data

Issue - State: closed - Opened by sammlapp over 1 year ago - 1 comment

#655 - noise reduction during prediction

Issue - State: open - Opened by sammlapp over 1 year ago - 2 comments
Labels: feature request, resolved_in_develop, module:preprocessing, module:ml

#654 - Add tutorial for training CNN on unsplit audio + raven annotations

Issue - State: closed - Opened by sammlapp over 1 year ago - 2 comments
Labels: high priority, docs, resolved_in_develop

#653 - handle zero-length annotations in BoxedAnnotations methods

Issue - State: closed - Opened by sammlapp over 1 year ago - 1 comment
Labels: bug, module:annotation

#651 - merge hotfix from master to develop

Pull Request - State: closed - Opened by sammlapp over 1 year ago

#650 - add missing mock-imports

Pull Request - State: closed - Opened by sammlapp over 1 year ago

#646 - Issue 562 preprocessing raise errors

Pull Request - State: closed - Opened by louisfh over 1 year ago

#642 - InteractiveSpectrogram class

Issue - State: open - Opened by sammlapp over 1 year ago - 2 comments