kitzeslab/opensoundscape issues and pull requests

#874 - Class resampling removes all samples that are negatives for every class

Issue - State: open - Opened by rhine3 11 months ago - 2 comments
Labels: resolved_in_develop

#873 - melspec plot is very squashed

Issue - State: open - Opened by sammlapp 11 months ago

#872 - BoxedAnnotations.subset does not retain audio_files

Issue - State: closed - Opened by sammlapp 11 months ago - 1 comment
Labels: bug, resolved_in_develop, module:annotation

#871 - list methods and editable attribute in Class docstrings

Issue - State: open - Opened by sammlapp 11 months ago - 1 comment
Labels: docs, resolved_in_develop

#870 - Refactor SynchronizedRecorderArray to store recorder position table

Issue - State: open - Opened by sammlapp 11 months ago
Labels: module:localization

#869 - refactor safe_dataset resolve #672

Pull Request - State: closed - Opened by sammlapp 11 months ago

#868 - Issue 793 spectrogram limits

Pull Request - State: closed - Opened by sammlapp 11 months ago

#867 - 0.10.0 release

Pull Request - State: closed - Opened by sammlapp 11 months ago

#866 - Tutorial updates

Pull Request - State: closed - Opened by sammlapp 11 months ago

#865 - training gives cryptic error when train_df is in wrong format

Issue - State: open - Opened by sammlapp 12 months ago
Labels: resolved_in_develop

#864 - Bump gitpython from 3.1.31 to 3.1.37

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#863 - BoxedAnnotations should raise error if some, but not all, Raven files have incorrect column names

Issue - State: closed - Opened by rhine3 12 months ago - 1 comment
Labels: bug

#862 - Add GradCAM visualization to wandb during CNN.predict

Pull Request - State: closed - Opened by sammlapp 12 months ago - 1 comment

#861 - Make it easier to freeze feature extractor

Issue - State: open - Opened by sammlapp 12 months ago - 1 comment
Labels: resolved_in_develop, module:ml

#860 - Issue_772_bandpass_warning

Pull Request - State: closed - Opened by sammlapp 12 months ago

#859 - TqdmWarning on importing CNN module

Issue - State: closed - Opened by rhine3 12 months ago - 3 comments
Labels: dependencies

#858 - make copy in one_hot_labels_on_time_interval

Pull Request - State: closed - Opened by sammlapp 12 months ago

#857 - Issue 856 setwithcopy

Pull Request - State: closed - Opened by sammlapp 12 months ago - 1 comment

#856 - SettingWithCopyWarning Produced when making one-hot clip labels

Issue - State: closed - Opened by sammlapp 12 months ago - 1 comment
Labels: resolved_in_develop

#855 - One-hot labels FutureWarning

Issue - State: open - Opened by rhine3 12 months ago
Labels: resolved_in_develop, deprecation

#854 - List editable attributes in docstring of SpatialEvent

Issue - State: open - Opened by sammlapp 12 months ago
Labels: docs, resolved_in_develop, module:localization

#853 - Add notebook for localization tutorial

Pull Request - State: closed - Opened by louisfh 12 months ago

#852 - multi-color multi-class cam plotting

Issue - State: closed - Opened by sammlapp 12 months ago - 1 comment

#851 - MPS memory issue on github macos runner workarouns

Pull Request - State: closed - Opened by louisfh 12 months ago

#850 - CI issues on macos runners

Issue - State: closed - Opened by louisfh 12 months ago
Labels: resolved_in_develop

#849 - Issue 790 pytorch integration

Pull Request - State: closed - Opened by sammlapp 12 months ago

#848 - Docs refresh

Pull Request - State: closed - Opened by rhine3 12 months ago

#847 - Bump pillow from 9.5.0 to 10.0.1

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#846 - Issue 840 posix paths

Pull Request - State: closed - Opened by louisfh 12 months ago

#845 - Bump urllib3 from 2.0.3 to 2.0.6

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#843 - fix Audio.from_url raising AxisError #837

Pull Request - State: closed - Opened by sammlapp about 1 year ago

#842 - use local version of ScoreCAM with bug fix

Pull Request - State: closed - Opened by sammlapp about 1 year ago

#841 - Feat linting ci

Pull Request - State: open - Opened by louisfh about 1 year ago - 1 comment

#840 - Cannot use posix path objects for filenames in clip_df passed to model.train()

Issue - State: closed - Opened by louisfh about 1 year ago - 1 comment
Labels: resolved_in_develop

#839 - add criterion_fn to overlay (selective overlay)

Pull Request - State: closed - Opened by sammlapp about 1 year ago

#838 - preprocessor.forward incorrect docstring

Issue - State: closed - Opened by sammlapp about 1 year ago
Labels: resolved_in_develop

#837 - Audio.from_url raising AxisError

Issue - State: closed - Opened by louisfh about 1 year ago - 1 comment
Labels: resolved_in_develop

#836 - Add links to source code in docs

Pull Request - State: closed - Opened by sammlapp about 1 year ago

#835 - Support tensorflow model hub inference

Pull Request - State: closed - Opened by sammlapp about 1 year ago

#834 - Issue 767 tqdm

Pull Request - State: closed - Opened by sammlapp about 1 year ago

#833 - AssertionError: Train and validation datasets must have same classes and class order as model object.

Issue - State: closed - Opened by louisfh about 1 year ago - 1 comment
Labels: resolved_in_develop

#832 - Bump gitpython from 3.1.31 to 3.1.34

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#831 - random low-pass augmentation

Issue - State: open - Opened by sammlapp about 1 year ago
Labels: feature request, module:preprocessing

#830 - time upsampling demo: randomized clip selection with repeats based on boxed annotations

Issue - State: open - Opened by sammlapp about 1 year ago
Labels: docs, module:annotation

#829 - keep overlay in default SpectrogramPreprocessor preprocessor pipeline

Issue - State: open - Opened by sammlapp about 1 year ago - 1 comment
Labels: resolved_in_develop, module:preprocessing

#828 - support mixed precision in CNN

Issue - State: open - Opened by sammlapp about 1 year ago - 4 comments
Labels: feature request, resolved_in_develop, module:ml

#827 - in develop, per-class avg precision plots the same values per class

Issue - State: closed - Opened by sammlapp about 1 year ago
Labels: bug, resolved_in_develop

#826 - in develop, preprocessor.out_shape doesn't actually change the tensor shape produced

Issue - State: closed - Opened by sammlapp about 1 year ago - 1 comment

#825 - Bump gitpython from 3.1.31 to 3.1.32

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#824 - Bump jupyter-server from 2.6.0 to 2.7.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#823 - Consider avoiding using term 'one-hot labels'

Issue - State: open - Opened by louisfh about 1 year ago - 8 comments
Labels: resolved_in_develop, rename

#820 - add 'orientation' docs for PyTorch users

Issue - State: closed - Opened by sammlapp about 1 year ago
Labels: docs, resolved_in_develop

#819 - add tutorial for opso preprocessing -> simCLR self-supervised training

Issue - State: open - Opened by sammlapp about 1 year ago

#818 - Add instructions for running tutorial notebooks in CoLab

Issue - State: closed - Opened by sammlapp about 1 year ago - 1 comment
Labels: docs, resolved_in_develop

#817 - consider supporting tensorflow model inference

Issue - State: closed - Opened by sammlapp about 1 year ago - 1 comment

#816 - add support for Perch and YAMNet feature embedding

Issue - State: closed - Opened by sammlapp about 1 year ago - 2 comments
Labels: feature request

#815 - add Audio.highpass and Audio.lowpass

Pull Request - State: closed - Opened by sammlapp about 1 year ago

#814 - Include links to source code in API documentation

Issue - State: closed - Opened by sammlapp about 1 year ago - 1 comment
Labels: docs, resolved_in_develop

#813 - Issue 784 boxed ann

Pull Request - State: closed - Opened by sammlapp about 1 year ago

#812 - #769: Raven file not retained in BoxedAnnotations if keep_extra_column not set to True

Pull Request - State: closed - Opened by syunkova about 1 year ago

#811 - Support sound-source separation at inference time

Issue - State: open - Opened by sammlapp about 1 year ago - 2 comments
Labels: feature request, module:ml

#810 - Issue 768 cam to cpu

Pull Request - State: closed - Opened by sammlapp about 1 year ago - 2 comments

#809 - automatically use mps if available

Pull Request - State: closed - Opened by sammlapp about 1 year ago

#808 - dont log_graph in wandb.watch

Pull Request - State: closed - Opened by sammlapp about 1 year ago

#807 - pick a nicer sample for gradcam demo in training notebook

Issue - State: open - Opened by sammlapp about 1 year ago
Labels: docs

#806 - Issue 789 per class metrics

Pull Request - State: closed - Opened by sammlapp about 1 year ago

#805 - Issue 779 load model helpful error message

Pull Request - State: closed - Opened by sammlapp about 1 year ago

#804 - resolve #792 no default shape

Pull Request - State: closed - Opened by sammlapp about 1 year ago

#803 - Give a useful error message if Preprocessor.forward receives DataFrame instead of Series

Issue - State: open - Opened by sammlapp about 1 year ago - 1 comment
Labels: resolved_in_develop

#802 - resolve MelSpectrogram has all -inf values #794

Pull Request - State: closed - Opened by sammlapp about 1 year ago

#801 - add "example usage" in docstrings

Issue - State: open - Opened by sammlapp about 1 year ago
Labels: discuss, docs

#800 - add troubleshooting page to docs

Issue - State: open - Opened by sammlapp about 1 year ago
Labels: discuss, docs

#799 - add fine-tuning tutorial

Issue - State: open - Opened by sammlapp about 1 year ago
Labels: docs

#798 - add linting to our CI workflow

Issue - State: open - Opened by sammlapp about 1 year ago
Labels: discuss, resolved_in_branch

#797 - Add tutorial for opso preprocessing -> YOLO v8 Object detection

Issue - State: open - Opened by sammlapp about 1 year ago - 2 comments
Labels: docs

#796 - cryptic preprocessing error if Spectrogram.bandpass Action receives MelSpectrogram object

Issue - State: closed - Opened by sammlapp about 1 year ago - 1 comment

#795 - Use config yml file for model training: demo

Issue - State: closed - Opened by sammlapp about 1 year ago - 7 comments
Labels: discuss, docs

#794 - MelSpectrogram has all -inf values

Issue - State: closed - Opened by sammlapp about 1 year ago
Labels: bug, resolved_in_develop

#793 - should Spectrogram values only be clipped to .decibel_limits during .plot() and .to_image()?

Issue - State: closed - Opened by sammlapp about 1 year ago - 2 comments
Labels: resolved_in_develop

#792 - change default sample shape of SpectrogramPreprocessor to None

Issue - State: closed - Opened by sammlapp about 1 year ago
Labels: resolved_in_develop

#791 - make preprocessor default behavior no augmentation

Issue - State: closed - Opened by sammlapp about 1 year ago - 1 comment

#790 - make it easier to use opensoundscape preprocessing with pytorch

Issue - State: closed - Opened by sammlapp about 1 year ago - 1 comment
Labels: docs, resolved_in_develop

#789 - add AP and AU_ROC for per-class metrics

Issue - State: closed - Opened by sammlapp about 1 year ago
Labels: in_progress, resolved_in_develop

#788 - log current epoch to wandb during training

Issue - State: closed - Opened by sammlapp about 1 year ago - 2 comments
Labels: feature request, module:wandb

#787 - wandb complains if you continue training a model

Issue - State: closed - Opened by sammlapp about 1 year ago - 2 comments
Labels: bug, resolved_in_develop, module:wandb

#786 - Saving a model in old OpSo version and loading it in new version.

Issue - State: closed - Opened by louisfh about 1 year ago - 4 comments
Labels: discuss, docs, resolved_in_develop

#785 - Bump certifi from 2023.5.7 to 2023.7.22

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#784 - BoxedAnnotations() doesn't create one-hot labels DataFrame for empty Raven selections file

Issue - State: closed - Opened by rhine3 about 1 year ago - 2 comments
Labels: bug, resolved_in_develop, module:annotation

#783 - Feat localize parallelize

Pull Request - State: closed - Opened by louisfh about 1 year ago - 1 comment

#782 - Make documentation for audio.estimate_delay clear that audio.estimate_delay(a,b) may not be equal to -audio.estimate_delay(b,a)

Issue - State: closed - Opened by louisfh about 1 year ago - 1 comment
Labels: resolved_in_develop

GitHub / kitzeslab/opensoundscape issues and pull requests