Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / kitzeslab/opensoundscape issues and pull requests

#974 - check metadata parsing of recent audiomoth firmware

Issue - State: open - Opened by sammlapp 5 months ago - 1 comment
Labels: resolved_in_develop

#973 - Audio or Spectrogram calibration

Issue - State: closed - Opened by sammlapp 5 months ago - 1 comment
Labels: feature request

#973 - Audio or Spectrogram calibration

Issue - State: closed - Opened by sammlapp 5 months ago - 1 comment
Labels: feature request

#973 - Audio or Spectrogram calibration

Issue - State: closed - Opened by sammlapp 5 months ago - 1 comment
Labels: feature request

#972 - extend_to gives error if n_samples is already correct

Issue - State: open - Opened by sammlapp 6 months ago
Labels: bug, resolved_in_develop

#971 - implement cnn.embed()

Issue - State: open - Opened by sammlapp 6 months ago
Labels: feature request, high priority, resolved_in_develop, module:ml

#970 - Docs: retraining pretrained models

Issue - State: open - Opened by rhine3 6 months ago
Labels: feature request, docs

#969 - Docs update: how to use embeddings

Issue - State: open - Opened by rhine3 6 months ago
Labels: feature request, docs, resolved_in_develop

#968 - Docs have dead links

Issue - State: open - Opened by louisfh 6 months ago
Labels: docs, resolved_in_develop

#967 - Docs update: description of overlays

Issue - State: open - Opened by rhine3 6 months ago
Labels: feature request, docs

#966 - Intro to training classifier

Pull Request - State: closed - Opened by sanruizguz 6 months ago

#965 - Tutorial showing best practice for saving models to use in later opso versions

Issue - State: open - Opened by louisfh 6 months ago - 1 comment
Labels: docs, resolved_in_develop

#964 - cam.plot() has white pixels from clipping

Issue - State: open - Opened by sammlapp 7 months ago
Labels: bug

#963 - save version-agnostic preprocessing for CNN spectrogram inference

Issue - State: open - Opened by sammlapp 7 months ago - 1 comment
Labels: resolved_in_develop, module:preprocessing, module:ml

#962 - add model zoo example to Quick Start

Issue - State: open - Opened by sammlapp 7 months ago
Labels: docs, resolved_in_develop

#962 - add model zoo example to Quick Start

Issue - State: open - Opened by sammlapp 7 months ago
Labels: docs

#961 - use AudioSample.from_series in BasePreprocessor._generate_sample

Issue - State: open - Opened by sammlapp 7 months ago
Labels: bug, resolved_in_develop

#961 - use AudioSample.from_series in BasePreprocessor._generate_sample

Issue - State: open - Opened by sammlapp 7 months ago
Labels: bug

#960 - slow operations in overlay()

Issue - State: open - Opened by sammlapp 7 months ago
Labels: performance

#960 - slow operations in overlay()

Issue - State: closed - Opened by sammlapp 7 months ago - 1 comment
Labels: module:preprocessing, performance, module:ml

#959 - Audio.spectrum() should pass kwargs

Issue - State: closed - Opened by sammlapp 7 months ago - 1 comment

#958 - Intro to training classifiers

Pull Request - State: closed - Opened by sanruizguz 7 months ago

#957 - From develop to docs

Pull Request - State: closed - Opened by sanruizguz 7 months ago

#956 - Docs no longer include necessary info for loading old model

Issue - State: open - Opened by sammlapp 7 months ago
Labels: docs, resolved_in_develop

#955 - improve Spectrogram.to_image speed for torch tensor

Issue - State: open - Opened by sammlapp 7 months ago
Labels: resolved_in_develop

#954 - use __call__ for Actions rather than .go()

Issue - State: open - Opened by sammlapp 7 months ago
Labels: resolved_in_develop, module:preprocessing

#953 - modifying original label df in overlay init

Issue - State: open - Opened by sammlapp 8 months ago
Labels: bug, resolved_in_develop, module:preprocessing

#952 - WandB errors experienced by users

Issue - State: open - Opened by louisfh 8 months ago - 6 comments
Labels: bug

#952 - WandB errors experienced by users

Issue - State: open - Opened by louisfh 8 months ago - 7 comments
Labels: bug, resolved_in_develop

#951 - Log epoch in wandb

Issue - State: open - Opened by rhine3 8 months ago - 1 comment

#949 - clarify that CNN.save() saves the entire object including all preprocessing parameters

Issue - State: closed - Opened by sammlapp 8 months ago - 2 comments
Labels: docs

#948 - Audio.extend_to(5) trimming a long file to 5 seconds is not intuitive

Issue - State: open - Opened by sammlapp 8 months ago
Labels: resolved_in_develop

#947 - spectrum estimation 'wrong'

Issue - State: open - Opened by WMXZ-EU 8 months ago - 8 comments
Labels: resolved_in_branch

#947 - spectrum estimation 'wrong'

Issue - State: closed - Opened by WMXZ-EU 8 months ago - 8 comments
Labels: resolved_in_develop

#946 - CAM for Similarity and difference of embeddings

Issue - State: open - Opened by sammlapp 8 months ago
Labels: feature request, in_progress, module:ml

#946 - CAM for Similarity and difference of embeddings

Issue - State: open - Opened by sammlapp 8 months ago
Labels: feature request, in_progress, module:ml

#945 - Many overlap_fractions don't produce results

Issue - State: open - Opened by rhine3 8 months ago - 2 comments
Labels: bug, resolved_in_develop

#944 - UserWarning: You are about to download and run code from an untrusted repository

Issue - State: open - Opened by rhine3 8 months ago - 2 comments
Labels: resolved_in_develop

#942 - more helpful error message if train/predict df index is not set

Issue - State: open - Opened by sammlapp 8 months ago
Labels: resolved_in_develop

#941 - Update ml metrics

Issue - State: open - Opened by sammlapp 8 months ago
Labels: resolved_in_develop, module:ml

#940 - Remove outdated wiki

Issue - State: closed - Opened by sammlapp 8 months ago - 1 comment

#939 - add preprocessing action for applying transfer functions

Issue - State: open - Opened by sammlapp 8 months ago - 2 comments
Labels: feature request

#938 - Provide spectrogram wrapper for creating spec that can recover signal RMS

Issue - State: open - Opened by sammlapp 8 months ago
Labels: feature request

#937 - Feat_profile_preprocessing

Pull Request - State: closed - Opened by sammlapp 8 months ago

#936 - revisit choice of default annotation column in BoxedAnnotations.from_raven_files

Issue - State: open - Opened by sammlapp 8 months ago - 2 comments
Labels: module:annotation

#935 - allow any scipy.signal.spectrogram kwargs in Spectrogram.from_audio

Issue - State: open - Opened by sammlapp 8 months ago
Labels: resolved_in_develop

#934 - Bump jinja2 from 3.1.2 to 3.1.3

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: resolved_in_develop, dependencies

#933 - Bump gitpython from 3.1.37 to 3.1.41

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: resolved_in_develop, dependencies

#932 - Some attributes of SpatialEvent are vague

Issue - State: open - Opened by rhine3 9 months ago - 1 comment
Labels: module:localization

#931 - expose audio._metadata_from_file_handler() in api

Issue - State: open - Opened by sammlapp 9 months ago
Labels: resolved_in_develop

#930 - Location is estimated despite not having enough recordings above cc_threshold

Issue - State: open - Opened by rhine3 9 months ago - 1 comment
Labels: bug, resolved_in_develop, module:localization

#929 - Feat set seed

Pull Request - State: closed - Opened by LeonardoViotti 9 months ago

#928 - Audio.from_file complains if offset is np.int64

Issue - State: open - Opened by sammlapp 9 months ago
Labels: bug, resolved_in_develop

#927 - allow arbitrary kwargs when calling .__call__

Issue - State: closed - Opened by sammlapp 9 months ago - 3 comments

#926 - Audio.trim with datetime

Issue - State: open - Opened by sammlapp 9 months ago

#925 - refactor CNN.loss_cls to enable fully flexible loss class initialization

Issue - State: open - Opened by sammlapp 9 months ago
Labels: resolved_in_develop, module:ml

#924 - Annoying futurewarning being raised by sample.py

Issue - State: open - Opened by louisfh 10 months ago - 1 comment
Labels: deprecation

#922 - Discrepancy in preprocessing tutorial

Issue - State: open - Opened by syunkova 10 months ago - 1 comment
Labels: docs, resolved_in_develop

#921 - Bump jupyter-server from 2.8.0 to 2.11.2

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: resolved_in_develop, dependencies

#920 - outputs directory

Issue - State: open - Opened by louisfh 10 months ago
Labels: resolved_in_develop

#918 - decibel_limits disappeared from preprocessor pipeline

Issue - State: closed - Opened by fascimare 10 months ago - 2 comments

#917 - enable custom validation step in model training

Issue - State: open - Opened by sammlapp 10 months ago - 1 comment
Labels: resolved_in_develop, module:ml

#916 - one_hot_clip_labels breaks after using convert_labels on BoxedAnnotations object

Issue - State: open - Opened by lmc150 10 months ago - 1 comment
Labels: bug, resolved_in_develop

#915 - Preprocessor should retain end_time when creating AudioSample

Issue - State: open - Opened by sammlapp 10 months ago
Labels: resolved_in_develop

#914 - Add sync tool for timestamped audio

Issue - State: open - Opened by louisfh 11 months ago - 6 comments
Labels: in_progress, module:localization

#913 - Remove CURL from tutorial notebook

Issue - State: open - Opened by louisfh 11 months ago - 3 comments
Labels: docs

#912 - update BCEWithLogitsLoss_hot to expose arguments to BCEWithLogitsLoss

Issue - State: open - Opened by sammlapp 11 months ago - 1 comment
Labels: high priority, resolved_in_develop, module:ml

#911 - Change Spectrogram.plot() axis titles

Issue - State: open - Opened by rhine3 11 months ago
Labels: feature request, resolved_in_develop

#910 - modify CNN to use any PyTorch LR Scheduler

Issue - State: open - Opened by sammlapp 11 months ago
Labels: resolved_in_develop, module:ml

#908 - Docs should state compatible python versions

Issue - State: open - Opened by sammlapp 11 months ago
Labels: docs, resolved_in_develop

#907 - call first Epoch 1 rather than 0

Issue - State: closed - Opened by sammlapp 11 months ago - 1 comment
Labels: discuss, rename, module:ml

#904 - random_trim_audio in default SpectrogramPreprocessor doesn't work

Issue - State: open - Opened by sammlapp 11 months ago - 2 comments
Labels: bug, resolved_in_develop, module:preprocessing

#902 - automatic self-profiling in train and predict

Issue - State: open - Opened by sammlapp 11 months ago - 1 comment
Labels: feature request, module:ml

#901 - allow training labels to be categorial

Issue - State: open - Opened by sammlapp 11 months ago - 1 comment
Labels: feature request, resolved_in_develop, performance, module:ml

#899 - upgrade to torch 2.1.1

Issue - State: open - Opened by sammlapp 11 months ago
Labels: resolved_in_develop, dependencies

#898 - update version number to 0.10.1

Pull Request - State: closed - Opened by sammlapp 11 months ago

#897 - Bump werkzeug from 3.0.0 to 3.0.1

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: resolved_in_develop, dependencies

#896 - Finetuning Pre-trained Models such as BirdNET or Perch

Issue - State: open - Opened by sunraymoonbeam 11 months ago - 3 comments
Labels: feature request

#895 - 0.10.1 release

Pull Request - State: closed - Opened by sammlapp 11 months ago

#894 - Issue_872_annotations

Pull Request - State: closed - Opened by sammlapp 11 months ago

#892 - refactor SpectrogramToTensor action

Pull Request - State: closed - Opened by sammlapp 11 months ago

#891 - check for values other than 0/1 in labels

Issue - State: open - Opened by sammlapp 11 months ago
Labels: resolved_in_develop

#890 - Spectrogram.to_image does not limit values using range parameter

Issue - State: closed - Opened by sammlapp 11 months ago - 1 comment
Labels: bug, resolved_in_develop

#889 - Futurewarning setting incompatible type

Issue - State: open - Opened by sammlapp 11 months ago
Labels: resolved_in_develop, deprecation

#888 - avoid mismatch between model.device='string' and torch.device

Issue - State: open - Opened by sammlapp 11 months ago - 1 comment
Labels: bug, resolved_in_develop

#887 - increase imports into top-level name-space

Issue - State: open - Opened by sammlapp 11 months ago - 1 comment
Labels: resolved_in_develop

#885 - add step in CNN.train/predict to count, then remove, missing files from samples dataframe

Issue - State: open - Opened by sammlapp 11 months ago - 2 comments
Labels: module:preprocessing

#884 - Series FutureWarning in sample.py:152

Issue - State: open - Opened by sammlapp 11 months ago - 2 comments
Labels: resolved_in_develop, deprecation

#883 - active learning tool: selecting samples to annotate

Issue - State: open - Opened by sammlapp 11 months ago
Labels: feature request

#882 - loca docs hotfix

Pull Request - State: closed - Opened by louisfh 11 months ago

#881 - to_tensor action in pipeline does not expose all arguments of Spectrogram.to_image

Issue - State: closed - Opened by sammlapp 11 months ago - 2 comments
Labels: bug, resolved_in_develop

#880 - Files from Audiomoth not being recognised

Issue - State: closed - Opened by dsbennett2023 11 months ago - 2 comments

#879 - Audio class: method for trimming to specific sample positions

Issue - State: closed - Opened by sammlapp 11 months ago
Labels: resolved_in_develop

#878 - Bump urllib3 from 2.0.6 to 2.0.7

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: resolved_in_develop, dependencies

#877 - wrappers for bioacoustic-model-zoo classes

Issue - State: closed - Opened by sammlapp 11 months ago - 1 comment

#876 - overlap_time or step_time argument for predicting on overlapping clips

Issue - State: open - Opened by syunkova 11 months ago - 1 comment
Labels: feature request, resolved_in_develop