Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / kitzeslab/opensoundscape issues and pull requests

#1103 - implement audio_root argument

Pull Request - State: closed - Opened by sammlapp 7 days ago

#1102 - Error when loading BirdNET model - opensoundscape library

Issue - State: closed - Opened by GrunCrow 10 days ago - 2 comments

#1101 - torch.load error when loading pickled objects

Issue - State: open - Opened by sammlapp 13 days ago
Labels: bug, resolved_in_develop

#1100 - BoxedAnnotations.concat does not retain .audio_files and .annotation_files

Issue - State: open - Opened by sammlapp 13 days ago
Labels: bug, resolved_in_develop

#1099 - enable passing list of options for annotation_column

Pull Request - State: closed - Opened by sammlapp 13 days ago

#1098 - allow multiple possible column names for BoxedAnnotations.from_raven_files

Issue - State: open - Opened by sammlapp 13 days ago - 4 comments
Labels: resolved_in_develop

#1097 - specify channel in clip df multi-index

Issue - State: open - Opened by sammlapp 16 days ago
Labels: feature request

#1094 - remove model zoo API

Issue - State: open - Opened by sammlapp 28 days ago
Labels: module:ml

#1093 - from_raven_files bug in checking if numeric index is in appropriate range

Issue - State: open - Opened by sammlapp 28 days ago
Labels: bug, resolved_in_develop

#1092 - data_selection.resample() n_samples_without_labels should allow None to keep original # samples without labels

Issue - State: open - Opened by sammlapp 28 days ago - 1 comment
Labels: feature request, resolved_in_develop

#1091 - update wav file metadata without reading and writing entire file

Issue - State: open - Opened by sammlapp 28 days ago - 1 comment
Labels: resolved_in_develop

#1090 - consider enabling caching of spectrograms during preprocessor

Issue - State: open - Opened by sammlapp 28 days ago
Labels: feature request

#1089 - resolves Overlay fails with Python 3.11.0 #1086

Pull Request - State: closed - Opened by sammlapp about 1 month ago - 2 comments

#1088 - Default overlay should use update_labels=True?

Issue - State: open - Opened by sammlapp about 1 month ago
Labels: module:preprocessing

#1086 - Overlay fails with Python 3.11.0

Issue - State: open - Opened by smholmes3 about 1 month ago - 2 comments
Labels: resolved_in_develop

#1085 - fix misspelled parameter

Pull Request - State: closed - Opened by bmford about 1 month ago - 1 comment

#1084 - installation issue on Windows

Issue - State: closed - Opened by sammlapp about 1 month ago

#1081 - bmz.load("HawkEars").training is True

Issue - State: closed - Opened by lostanlen 3 months ago - 4 comments

#1080 - allow audio_root arg in predict() API

Issue - State: open - Opened by sammlapp 3 months ago
Labels: feature request, resolved_in_develop, module:ml

#1078 - input validation gives error when there is only one class in label df

Issue - State: open - Opened by sammlapp 3 months ago
Labels: bug, resolved_in_develop

#1077 - shallow_classifier.quick_fit() reports average precision instead of AU_ROC

Issue - State: open - Opened by sammlapp 3 months ago
Labels: bug, resolved_in_develop

#1076 - better display of preprocessor

Issue - State: open - Opened by sammlapp 3 months ago
Labels: resolved_in_develop

#1075 - PositionEstimate returned from localization tools contains incorrect list of receiver_start_time_offsets

Issue - State: open - Opened by sammlapp 4 months ago
Labels: bug, resolved_in_develop, module:localization

#1074 - CNN.generate_samples() no longer returns AudioSample type

Issue - State: open - Opened by sammlapp 4 months ago
Labels: bug, resolved_in_develop

#1073 - allow other input types to preprocessor classes

Issue - State: closed - Opened by sammlapp 4 months ago - 1 comment
Labels: bug

#1072 - HawkEars predict() has scores from audio clips that did not exist

Issue - State: open - Opened by sammlapp 4 months ago - 1 comment
Labels: bug, module:ml

#1070 - SpatialEvent _localize_after_cross_correlation distance_residuals not set

Issue - State: open - Opened by sammlapp 4 months ago
Labels: bug, resolved_in_develop

#1069 - CNN.generate_cams() with batch_size>0 bug

Issue - State: open - Opened by sammlapp 4 months ago
Labels: bug

#1068 - Reading Audacity annotations

Issue - State: closed - Opened by Maxime-Bru 4 months ago - 1 comment

#1066 - Release 0.11.0

Pull Request - State: closed - Opened by sammlapp 4 months ago

#1066 - Release 0.11.0

Pull Request - State: closed - Opened by sammlapp 4 months ago

#1065 - docs PyEnchant for spell check etc

Issue - State: open - Opened by sammlapp 4 months ago
Labels: docs

#1065 - docs PyEnchant for spell check etc

Issue - State: open - Opened by sammlapp 4 months ago
Labels: docs

#1063 - wandb dependency

Issue - State: closed - Opened by jmcmeen 5 months ago - 1 comment
Labels: resolved_in_develop

#1062 - expose augment flag in .embed()

Issue - State: closed - Opened by sammlapp 5 months ago - 1 comment
Labels: module:preprocessing, module:ml

#1061 - BoxedAnnotations.clip_labels is producing all-true labels in develop branch

Issue - State: closed - Opened by sammlapp 5 months ago
Labels: bug, resolved_in_develop

#1060 - predict/embed on df with index=file no longer supported? in develop

Issue - State: closed - Opened by sammlapp 5 months ago - 1 comment
Labels: bug

#1060 - predict/embed on df with index=file no longer supported? in develop

Issue - State: closed - Opened by sammlapp 5 months ago - 1 comment
Labels: bug

#1059 - Install fails with Python 3.12.3

Issue - State: open - Opened by jhuus 5 months ago - 2 comments
Labels: resolved_in_develop

#1059 - Install fails with Python 3.12.3

Issue - State: closed - Opened by jhuus 5 months ago - 2 comments
Labels: resolved_in_develop

#1056 - Add a generate_embeddings() method to custom CNN

Issue - State: open - Opened by Maxime-Bru 5 months ago - 2 comments
Labels: resolved_in_develop

#1056 - Add a generate_embeddings() method to custom CNN

Issue - State: closed - Opened by Maxime-Bru 5 months ago - 2 comments
Labels: resolved_in_develop

#1055 - use speed_of_sound attribute in methods

Pull Request - State: closed - Opened by sammlapp 5 months ago

#1054 - Fix index checking

Pull Request - State: closed - Opened by sammlapp 5 months ago

#1053 - Feat_categorical_labels

Pull Request - State: closed - Opened by sammlapp 6 months ago

#1052 - SpectrogramClassifier.embed() should return dataframe

Issue - State: closed - Opened by sammlapp 6 months ago - 1 comment
Labels: resolved_in_develop, module:ml

#1051 - support training shallow classifiers on top of tensorflow feature extractor

Issue - State: closed - Opened by sammlapp 6 months ago
Labels: in_progress, resolved_in_develop

#1049 - tutorials with new features

Issue - State: closed - Opened by sammlapp 6 months ago
Labels: resolved_in_develop

#1048 - Feat 350 pcen

Pull Request - State: closed - Opened by sammlapp 6 months ago

#1047 - embed fails if passed df with just one row

Issue - State: closed - Opened by sammlapp 6 months ago - 1 comment
Labels: bug, resolved_in_develop

#1046 - Feat 980 msrp phat

Pull Request - State: open - Opened by louisfh 6 months ago

#1046 - Feat 980 msrp phat

Pull Request - State: open - Opened by louisfh 6 months ago

#1045 - Bump jupyterlab from 4.2.1 to 4.2.5

Pull Request - State: open - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#1045 - Bump jupyterlab from 4.2.1 to 4.2.5

Pull Request - State: open - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#1044 - one_hot_to_categorical is unclear/does not work

Issue - State: closed - Opened by louisfh 6 months ago - 5 comments

#1044 - one_hot_to_categorical is unclear/does not work

Issue - State: closed - Opened by louisfh 6 months ago - 5 comments

#1043 - DeprecationWarning when using Spectrogram.plot()

Issue - State: open - Opened by louisfh 6 months ago - 1 comment

#1043 - DeprecationWarning when using Spectrogram.plot()

Issue - State: open - Opened by louisfh 6 months ago - 1 comment
Labels: deprecation

#1042 - Resolve slow clip labels

Pull Request - State: closed - Opened by louisfh 6 months ago - 1 comment

#1041 - SynchronizedRecorderArray API should allow localizing a list of already-created events

Issue - State: closed - Opened by sammlapp 6 months ago
Labels: resolved_in_develop, module:localization

#1039 - rename Action.go() to Action.__call__

Pull Request - State: closed - Opened by sammlapp 6 months ago

#1038 - adds MultiChannelAudio class

Pull Request - State: closed - Opened by sammlapp 6 months ago

#1037 - expose audio.load_metadata in api

Pull Request - State: closed - Opened by sammlapp 6 months ago

#1036 - Refactor machine learning modules to enable Ligthning

Pull Request - State: closed - Opened by sammlapp 6 months ago

#1035 - preprocessor.forward shouldn't modify the sample in place

Issue - State: closed - Opened by sammlapp 6 months ago - 1 comment
Labels: resolved_in_develop

#1034 - improve error message when samples dataframe is not correct format

Issue - State: open - Opened by lmc150 6 months ago
Labels: docs

#1033 - Custom Preprocessor and preprocessing pipeline construction from yaml file

Issue - State: closed - Opened by paulpeyret-biophonia 6 months ago - 2 comments
Labels: resolved_in_develop

#1031 - add small example audio files within the package

Issue - State: closed - Opened by sammlapp 7 months ago - 1 comment
Labels: feature request

#1030 - methods for calculating sound level, propagation, and attenuation

Issue - State: open - Opened by sammlapp 7 months ago
Labels: feature request

#1029 - 922 docs fixes + random typos

Pull Request - State: closed - Opened by syunkova 7 months ago

#1028 - allow continuous classifier scores rather than detections in SynchronizedRecorderArray

Issue - State: open - Opened by sammlapp 7 months ago
Labels: feature request, module:localization

#1027 - store localization algorithm used as an attribute of SpatialEvent

Issue - State: closed - Opened by sammlapp 7 months ago - 1 comment
Labels: module:localization

#1025 - implement noise reduction

Pull Request - State: closed - Opened by sammlapp 7 months ago

#1024 - Bump sentry-sdk from 2.3.1 to 2.8.0

Pull Request - State: open - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#1023 - load_model warning might be overly pessimistic

Issue - State: closed - Opened by louisfh 7 months ago
Labels: docs, resolved_in_develop

#1021 - Implement embed() method

Pull Request - State: open - Opened by sammlapp 7 months ago

#1021 - Implement embed() method

Pull Request - State: closed - Opened by sammlapp 7 months ago

#1020 - use timestamps in localization tools

Pull Request - State: closed - Opened by sammlapp 7 months ago - 2 comments

#1020 - use timestamps in localization tools

Pull Request - State: open - Opened by sammlapp 7 months ago

#1019 - Bump certifi from 2024.2.2 to 2024.7.4

Pull Request - State: open - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#1018 - helper functions for selecting audio files from date and time ranges

Issue - State: open - Opened by sammlapp 8 months ago
Labels: feature request

#1016 - MPS no support for min_max int64

Issue - State: open - Opened by sammlapp 8 months ago

#1015 - add kwargs to Spectrogram.from_audio

Pull Request - State: closed - Opened by sammlapp 8 months ago - 1 comment

#1014 - Numpy 2.0 not compatible error

Issue - State: closed - Opened by sammlapp 8 months ago - 1 comment
Labels: bug, resolved_in_develop

#1013 - code style: call super() without arguments

Issue - State: closed - Opened by sammlapp 8 months ago
Labels: resolved_in_develop

#1011 - Incorrect default argument for BoxedAnnotation.one_hot_clip_labels(min_label_fraction=1)

Issue - State: closed - Opened by louisfh 9 months ago
Labels: bug, resolved_in_develop

#1011 - Incorrect default argument for BoxedAnnotation.one_hot_clip_labels(min_label_fraction=1)

Issue - State: open - Opened by louisfh 9 months ago
Labels: bug, resolved_in_branch

#1010 - fixes #770, 10-fold speed up of one_hot_labels_like

Pull Request - State: closed - Opened by louisfh 9 months ago - 1 comment

#1009 - Colab tutorial notebooks not working

Issue - State: closed - Opened by louisfh 9 months ago - 3 comments
Labels: bug, docs, resolved_in_develop