Ecosyste.ms: Issues

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GitHub / kirichoi/netplotlib issues and pull requests

#51 - Add support for additional layout algorithms

Issue - State: open - Opened by kirichoi almost 3 years ago
Labels: enhancement

#50 - Pull to HEAD

Pull Request - State: closed - Opened by kirichoi almost 3 years ago

#49 - Pull to HEAD

Pull Request - State: closed - Opened by kirichoi almost 3 years ago

#48 - Add support for layout extension

Issue - State: closed - Opened by kirichoi almost 4 years ago - 1 comment
Labels: enhancement

#47 - Add option to plot time for generateTimelapse

Issue - State: closed - Opened by kirichoi almost 4 years ago
Labels: enhancement

#46 - Support libsbml_draw

Issue - State: open - Opened by kirichoi about 4 years ago
Labels: enhancement

#45 - Pull to HEAD

Pull Request - State: closed - Opened by kirichoi over 4 years ago

#44 - Better handling of layout algorithm errors

Issue - State: closed - Opened by kirichoi over 4 years ago
Labels: bug

#43 - Add function to list supported layout algorithms

Issue - State: closed - Opened by kirichoi over 4 years ago
Labels: enhancement

#42 - Add function to reset specific parameters

Issue - State: open - Opened by kirichoi over 4 years ago
Labels: enhancement

#41 - Support setting layout

Issue - State: closed - Opened by kirichoi over 4 years ago
Labels: enhancement

#40 - Reset layout algorithm when not explicitly set

Issue - State: closed - Opened by kirichoi almost 5 years ago
Labels: bug

#39 - Pull to HEAD

Pull Request - State: closed - Opened by kirichoi almost 5 years ago

#38 - Potential issue with netplotlib not grabbing speciesIds

Issue - State: open - Opened by kirichoi about 5 years ago - 3 comments
Labels: bug, enhancement

#37 - Add support for graphviz

Issue - State: closed - Opened by kirichoi about 5 years ago
Labels: enhancement

#36 - Pull to HEAD

Pull Request - State: closed - Opened by kirichoi about 5 years ago

#35 - Support drawing models without Kinetic Law

Issue - State: closed - Opened by carlosvega about 5 years ago - 7 comments
Labels: bug, enhancement

#34 - Pull to HEAD

Pull Request - State: closed - Opened by kirichoi about 5 years ago

#33 - 'DiGraph' object has no attribute 'node' when using net.draw()

Issue - State: closed - Opened by kaisengit over 5 years ago - 2 comments
Labels: bug

#32 - Pull to HEAD

Pull Request - State: closed - Opened by kirichoi over 5 years ago

#31 - Pull to HEAD

Pull Request - State: closed - Opened by kirichoi over 5 years ago

#30 - Support plotting multiple diagrams in a grid

Issue - State: closed - Opened by kirichoi almost 6 years ago - 1 comment

#29 - Pull to HEAD

Pull Request - State: closed - Opened by kirichoi almost 6 years ago

#28 - Pull to HEAD

Pull Request - State: closed - Opened by kirichoi almost 6 years ago

#27 - Issue with breakBoundary in `Network`

Issue - State: closed - Opened by kirichoi almost 6 years ago

#26 - Pull to HEAD

Pull Request - State: closed - Opened by kirichoi almost 6 years ago

#25 - Add transparency effect on edges in NetworkEnsemble

Issue - State: closed - Opened by kirichoi almost 6 years ago

#24 - Fix issue with edge width of modifiers in NetworkEnsemble

Issue - State: closed - Opened by kirichoi almost 6 years ago

#23 - Fix issue with incorrect modifiers in NetworkEnsemble

Issue - State: closed - Opened by kirichoi almost 6 years ago

#21 - Add function to threshold weighted graphs

Issue - State: closed - Opened by kirichoi about 6 years ago - 1 comment

#20 - Pull to HEAD

Pull Request - State: closed - Opened by kirichoi about 6 years ago

#19 - Support reversible reactions

Issue - State: closed - Opened by kirichoi about 6 years ago
Labels: enhancement

#18 - Issue with installation

Issue - State: closed - Opened by kirichoi about 6 years ago
Labels: bug, priority

#17 - Update documents

Issue - State: open - Opened by kirichoi about 6 years ago
Labels: documentation

#16 - Add more test cases

Issue - State: closed - Opened by kirichoi about 6 years ago - 1 comment
Labels: enhancement

#15 - Separate develop branch

Issue - State: closed - Opened by kirichoi about 6 years ago

#14 - Check models with complex stoichiometries

Issue - State: closed - Opened by kirichoi about 6 years ago
Labels: enhancement

#13 - BI-UNI or UNI-BI seems to have problems

Issue - State: closed - Opened by kirichoi about 6 years ago
Labels: bug

#12 - Limit Python version for wheels

Issue - State: closed - Opened by kirichoi about 6 years ago

#11 - Support model with autoregulation

Issue - State: closed - Opened by kirichoi about 6 years ago
Labels: enhancement

#10 - Support model with undefined boundary species

Issue - State: closed - Opened by kirichoi about 6 years ago
Labels: enhancement

#9 - Implement function to break boundary nodes

Issue - State: closed - Opened by kirichoi about 6 years ago
Labels: enhancement

#8 - Documentation needed

Issue - State: closed - Opened by kirichoi over 6 years ago
Labels: enhancement, documentation

#7 - Add option for weighted diagrams to change the alpha

Issue - State: closed - Opened by kirichoi over 6 years ago
Labels: enhancement

#6 - Accept user-supplied weights

Issue - State: closed - Opened by kirichoi over 6 years ago
Labels: enhancement

#5 - Implement function to get node positions only

Issue - State: closed - Opened by kirichoi over 6 years ago
Labels: enhancement

#4 - Update layout/edges

Issue - State: closed - Opened by kirichoi over 6 years ago - 3 comments
Labels: enhancement

#3 - Add support to change colors of node edges

Issue - State: closed - Opened by kirichoi over 6 years ago - 1 comment

#2 - Make reaction nodes SBGN compliant

Issue - State: closed - Opened by kirichoi over 6 years ago - 1 comment
Labels: enhancement

#1 - Certain characters are reserved for Sympy

Issue - State: closed - Opened by kirichoi over 6 years ago
Labels: bug, enhancement