kingaa/pomp issues and pull requests

#209 - Add proper reference to 'Weighted quantile estimators'

Pull Request - State: closed - Opened by AndreyAkinshin 8 months ago - 3 comments

#205 - How to add the exp(cubic spline) function to the deterministic model？

Issue - State: closed - Opened by LBJlove1 about 1 year ago - 14 comments
Labels: help wanted

#204 - How to estimate parameters of SIR model

Issue - State: closed - Opened by whzhuscu about 1 year ago - 2 comments

#202 - Pseudo-likelihood combining iterated filtering and probe matching

Issue - State: closed - Opened by Fuhan-Yang about 1 year ago - 4 comments
Labels: question

#197 - Error in adapting old syntax (traj.match) to the new one(traj_objfun)

Issue - State: closed - Opened by zz100chan over 1 year ago - 8 comments

#194 - I can't resolve this error when trying to run pomp

Issue - State: closed - Opened by LBJlove1 over 1 year ago - 4 comments

#186 - Can I access the files related to Csnippet and directly edit?

Issue - State: closed - Opened by Fuhan-Yang over 1 year ago - 4 comments
Labels: question

#184 - An error associated with the installation and C snippets

Issue - State: closed - Opened by Ananthu89 almost 2 years ago - 4 comments
Labels: bug

#182 - feel confused when choosing the best fitted model with loglik

Issue - State: closed - Opened by stevenhuyi almost 2 years ago - 1 comment
Labels: help wanted

#177 - Using R's internal sample function in CSnippet

Issue - State: closed - Opened by trh3 about 2 years ago - 7 comments

#175 - Implementing a time delay in pomp

Issue - State: closed - Opened by catherinebyrne over 2 years ago - 1 comment
Labels: question

#169 - Can we fit the time-series with the weighted likelihood?

Issue - State: closed - Opened by Spatial-R over 2 years ago - 3 comments
Labels: help wanted

#168 - Update code snippets in pompjss.Rnw file

Pull Request - State: closed - Opened by mkbwang almost 3 years ago

#167 - MIF unable to fit to the data

Issue - State: closed - Opened by mehrdadfazli almost 3 years ago - 7 comments
Labels: help wanted

#166 - encounter problems when conducting trajectory fitting

Issue - State: closed - Opened by stevenhuyi about 3 years ago - 15 comments
Labels: help wanted

#165 - Minor change to simulate function with format = data.frame, and inclu…

Pull Request - State: closed - Opened by jeswheel about 3 years ago - 2 comments

#164 - How to simulate the time-varying parameter model by pomp package?

Issue - State: closed - Opened by Curley-l about 3 years ago - 14 comments
Labels: help wanted, invalid

#157 - Measurement model for multi-observed variables/states

Issue - State: closed - Opened by mehrdadfazli about 3 years ago - 12 comments
Labels: question

#153 - Global Search failing bc of one particle

Issue - State: closed - Opened by mehrdadfazli over 3 years ago - 2 comments
Labels: help wanted

#152 - Error: in ‘bsmc2’: ‘dmeasure’ with log=TRUE returns illegal value

Issue - State: closed - Opened by kingaa over 3 years ago - 4 comments
Labels: bug

#151 - Error I'm getting for pfilter function

Issue - State: closed - Opened by kingaa over 3 years ago - 2 comments
Labels: question

#149 - Trajectory Fitting issue

Issue - State: closed - Opened by catherinebyrne over 3 years ago - 9 comments
Labels: help wanted

#141 - looking for more information on `bsmc2()`

Issue - State: closed - Opened by tbrown122387 over 3 years ago - 1 comment

#140 - [help wanted]Measles example MLEs

Issue - State: closed - Opened by mayaxm over 3 years ago - 3 comments
Labels: invalid

#139 - Compatibility with R 3.6.3?

Issue - State: closed - Opened by MiguelFudolig over 3 years ago - 1 comment

#138 - Update issue templates

Pull Request - State: closed - Opened by kingaa over 3 years ago

#137 - Can I fit surveillance data using zero-inflated Poisson or negative binomial distributions?

Issue - State: closed - Opened by Spatial-R over 3 years ago - 5 comments
Labels: help wanted

#136 - How to use ddgamma(x,shape,scale) in rprocess of Csnippets?

Issue - State: closed - Opened by SwethaLal over 3 years ago - 1 comment
Labels: help wanted, question

#133 - error, 'simulate' function

Issue - State: closed - Opened by ksm5k almost 4 years ago - 2 comments

#131 - debugging statements in Csnippets?

Issue - State: closed - Opened by bbolker almost 4 years ago - 7 comments

#130 - SEIR model pomp package

Issue - State: closed - Opened by Wurzelqueen almost 4 years ago - 2 comments

#129 - more detail on delays in blowflies1 and blowflies2?

Issue - State: closed - Opened by slwu89 about 4 years ago - 2 comments
Labels: question

#128 - Big discrepancy between euler and gillespie/ode sample paths

Issue - State: closed - Opened by fintzij about 4 years ago - 7 comments
Labels: question

#127 - Warning ：install.packages("panelPomp")

Issue - State: closed - Opened by AWalkInClouds about 4 years ago - 3 comments

#126 - rmeas and dmeas for random population samples (not incidence) data

Issue - State: closed - Opened by mayagroner about 4 years ago - 34 comments
Labels: help wanted

#125 - Error: in ‘pmcmc’: in ‘pfilter’:

Issue - State: closed - Opened by Yalthoba1407 about 4 years ago - 1 comment

#124 - How can I prevent parameters getting negative in pmcmc?

Issue - State: closed - Opened by tillweigt about 4 years ago - 10 comments
Labels: help wanted

#123 - Parallelized pomp object

Issue - State: closed - Opened by munozav over 4 years ago - 6 comments

#122 - Error: in ‘simulate’: Mistaken array variable declaration in pomp, maybe?

Issue - State: closed - Opened by luismieryteran over 4 years ago - 1 comment
Labels: help wanted

#121 - manual on rw.sd schedule

Issue - State: closed - Opened by bogaotory over 4 years ago - 5 comments
Labels: question

#120 - rm: cannot remove 'tmp.def': Permission denied

Issue - State: closed - Opened by alexandrasouly over 4 years ago - 4 comments
Labels: help wanted, todo

#119 - On the `give_log` flag in the `dmeasure` component

Issue - State: closed - Opened by bogaotory over 4 years ago - 5 comments
Labels: question, todo

#118 - Conditional likelihood goes to 0

Issue - State: closed - Opened by fomotis over 4 years ago - 1 comment
Labels: duplicate

#117 - Error in profiles.R file

Issue - State: closed - Opened by DimitarTerziev over 4 years ago - 4 comments
Labels: help wanted

#116 - Error: in ‘subplex’: in ‘trajectory’: in ‘flow’: error in ODE integrator: illegal input detected before taking any integration steps

Issue - State: closed - Opened by fomotis over 4 years ago - 23 comments
Labels: help wanted, todo

#115 - Error: error in building shared-object library from C snippets: in ‘Cbuilder’: compilation error

Issue - State: closed - Opened by navarromia2 over 4 years ago - 8 comments
Labels: help wanted

#114 - Discrepancy in objective functions defined using trajectory and simulate

Issue - State: closed - Opened by gokhale616 over 4 years ago - 7 comments
Labels: help wanted, question

#112 - Introducing a time lag in dmeasure or rmeasure functions

Issue - State: closed - Opened by jdlee over 4 years ago - 2 comments
Labels: question

#111 - Parameters to function in argument events to trajectory function

Issue - State: closed - Opened by munozav over 4 years ago - 10 comments
Labels: help wanted

#110 - fragility of reulermultinom?

Issue - State: closed - Opened by bbolker over 4 years ago - 2 comments
Labels: question

#109 - Not issue, Need help with pmcmc

Issue - State: closed - Opened by NedaJalali-codes over 4 years ago - 12 comments
Labels: bug, help wanted

#108 - pmcmc example for SIR model in pomp version 2

Issue - State: closed - Opened by NedaJalali-codes over 4 years ago - 4 comments
Labels: enhancement

#103 - Error: error in building shared-object library from C snippets: in ‘Cbuilder’: compilation error: cannot compile shared-object library

Issue - State: closed - Opened by braunheim over 4 years ago - 8 comments

#93 - Fitting an age-structured model to a single time series

Issue - State: closed - Opened by caseyzipfel over 5 years ago - 2 comments
Labels: question

#92 - Using partrans and parameter_trans

Issue - State: closed - Opened by gmferra over 5 years ago - 3 comments
Labels: help wanted

#91 - Assignment of model parameters to a pomp model

Issue - State: closed - Opened by aakhmetz over 5 years ago - 2 comments

#90 - ode_control in traj.match

Issue - State: closed - Opened by 17nak1 over 5 years ago - 2 comments

#89 - Event-based annual aging in an age-structured ODE

Issue - State: closed - Opened by luccoffeng over 5 years ago - 9 comments
Labels: question

#88 - Error in is.nloptr(ret) : objective in x0 returns NA

Issue - State: closed - Opened by minjuner over 5 years ago - 3 comments
Labels: help wanted

#87 - Issue with pomp pfilter [new]

Issue - State: closed - Opened by natelee1019 over 5 years ago - 3 comments
Labels: help wanted

#85 - Is enkf() working well? There is no example on the documentation about enkf()

Issue - State: closed - Opened by marius190 almost 6 years ago - 3 comments
Labels: duplicate, question

#84 - How to implement a Multidimensional model in POMP to use enkf

Issue - State: closed - Opened by marius190 almost 6 years ago - 3 comments
Labels: invalid

#83 - Error: bad option for ‘covar’.

Issue - State: closed - Opened by danieljn19 almost 6 years ago - 1 comment

#82 - "error in building shared-object library from C snippets"

Issue - State: closed - Opened by danieljn19 almost 6 years ago - 1 comment

#81 - Stochastic simulation reproducibility with seed: only works when number of repeated sims and number of parameter sets is exactly the same

Issue - State: closed - Opened by luccoffeng almost 6 years ago - 4 comments

#80 - pomp debug

Issue - State: closed - Opened by minjuner almost 6 years ago - 5 comments
Labels: help wanted

#79 - Removing a known number of individuals from a specific compartment?

Issue - State: closed - Opened by gavincotterill about 6 years ago - 3 comments

#78 - Inconsistency between R-Desolve Model and Pomp Csnippet!

Issue - State: closed - Opened by pakdamie about 6 years ago - 1 comment
Labels: help wanted

#77 - Measles example

Issue - State: closed - Opened by adesupo about 6 years ago - 1 comment

#76 - cannot compile shared library error

Issue - State: closed - Opened by eclee25 about 6 years ago - 5 comments

#74 - filter.mean vs filter.traj (with added Qs on prediction and smoothing)

Issue - State: closed - Opened by MarieAugerMethe over 6 years ago - 5 comments
Labels: question, todo

#73 - how to write a rprocess

Issue - State: closed - Opened by cillia0502 over 6 years ago - 4 comments
Labels: help wanted

#72 - Guidelines for choosing rw.sd values

Issue - State: closed - Opened by MarieAugerMethe over 6 years ago - 6 comments

#71 - Get seed from R environment in Csnippets

Issue - State: closed - Opened by MarieAugerMethe over 6 years ago - 2 comments
Labels: question

#70 - Error: in ‘trajectory’: error in ODE integrator: illegal input detected before taking any integration steps - see written message

Issue - State: closed - Opened by gokhale616 over 6 years ago - 2 comments
Labels: help wanted

GitHub / kingaa/pomp issues and pull requests