Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / kind-lab/mimic-fhir issues and pull requests

#122 - Insurance Info not Encoded

Issue - State: open - Opened by jenempallo 2 months ago

#121 - The data cannot be found in the database.

Issue - State: open - Opened by 1unasy 3 months ago

#120 - MIMIC IV Note and CXCR

Issue - State: open - Opened by Dyke-F 3 months ago

#119 - Malformed JSON

Issue - State: open - Opened by rudolfjs 4 months ago

#118 - Update SQL script that exports FHIR resources to NDJSON files.

Pull Request - State: closed - Opened by piotrszul 4 months ago

#117 - Anchor Years

Issue - State: open - Opened by jenempallo 4 months ago

#116 - Seq_num diagnosis_icd missing

Issue - State: open - Opened by jenempallo 5 months ago

#115 - Validation fixes

Pull Request - State: closed - Opened by johngrimes 5 months ago

#103 - Wrong namespace on the XHTML [Medication.text.div]

Issue - State: closed - Opened by piotrszul 5 months ago

#100 - Object must have some content [Specimen.collection]

Issue - State: open - Opened by piotrszul 5 months ago

#96 - Value is '{Beats}/min' but must be '/min'

Issue - State: closed - Opened by piotrszul 5 months ago

#94 - OMR table mapping

Issue - State: open - Opened by jenempallo 6 months ago

#93 - fix: `medicationCodeableConcept` for `MedicationRequest` from list to object

Pull Request - State: closed - Opened by joennlae 7 months ago - 1 comment

#91 - Invalid JSON

Issue - State: open - Opened by johngrimes 8 months ago - 1 comment

#90 - add MIT license

Pull Request - State: closed - Opened by alistairewj about 1 year ago

#89 - LICENSE

Issue - State: closed - Opened by ewulczyn about 1 year ago - 1 comment

#88 - Step-by-step

Pull Request - State: closed - Opened by Dokotela about 1 year ago - 1 comment

#87 - Is complete version available for download?

Issue - State: closed - Opened by JHLiu7 over 1 year ago - 9 comments

#86 - Added validation for fhir tables and updated quickstart documentation

Pull Request - State: closed - Opened by Evan8456 over 1 year ago

#85 - Updates to Quickstart and Minor Db bugfix

Pull Request - State: closed - Opened by Evan8456 over 1 year ago

#84 - mimiciv_ed.edstays referenced in fhir_patient.sql is not part of mimiciv 2.2?

Issue - State: closed - Opened by sebbarb over 1 year ago - 2 comments

#83 - Updates for MIMIC-IV v2.2

Pull Request - State: closed - Opened by alexmbennett2 almost 2 years ago

#82 - Revalidate bundles from GCP

Pull Request - State: closed - Opened by alexmbennett2 about 2 years ago - 1 comment

#81 - Profiler updates to py_mimic_fhir

Pull Request - State: closed - Opened by alexmbennett2 about 2 years ago

#80 - Load BigQuery with data and validate

Pull Request - State: closed - Opened by alexmbennett2 about 2 years ago

#79 - New test cases

Pull Request - State: closed - Opened by alexmbennett2 about 2 years ago

#78 - update url to include /fhir/mimic

Pull Request - State: closed - Opened by alexmbennett2 about 2 years ago

#77 - Update url to mimic.mit.edu/fhir

Pull Request - State: closed - Opened by alexmbennett2 about 2 years ago - 1 comment

#76 - Added GCP FHIR validation

Pull Request - State: closed - Opened by alexmbennett2 about 2 years ago

#75 - US Core Removal Fixes

Pull Request - State: closed - Opened by alexmbennett2 about 2 years ago

#74 - Validation Scaling with GCP

Pull Request - State: closed - Opened by alexmbennett2 about 2 years ago

#73 - Test row counts

Pull Request - State: closed - Opened by alistairewj about 2 years ago

#72 - Mimic ED

Pull Request - State: closed - Opened by alexmbennett2 over 2 years ago

#71 - NamingSystem for identifiers

Issue - State: open - Opened by alexmbennett2 over 2 years ago - 3 comments

#70 - Full scale MIMIC in FHIR

Pull Request - State: closed - Opened by alexmbennett2 over 2 years ago

#69 - Multiprocessing added to py_mimic_fhir

Pull Request - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#68 - Updating references to concept map valuesets

Pull Request - State: closed - Opened by alexmbennett2 over 2 years ago

#67 - Tutorial for using mimic-fhir

Pull Request - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#66 - Export update to make ndjson deterministric

Pull Request - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#65 - Add provenance element

Issue - State: open - Opened by alexmbennett2 over 2 years ago - 1 comment

#64 - Add resource narratives

Issue - State: open - Opened by alexmbennett2 over 2 years ago - 1 comment

#63 - Minor changes made for full demo creation

Pull Request - State: closed - Opened by alexmbennett2 over 2 years ago

#62 - Updates to encounter and encounter_icu

Pull Request - State: closed - Opened by alexmbennett2 over 2 years ago

#61 - Pathling import of mimic-fhir resources

Issue - State: closed - Opened by alexmbennett2 over 2 years ago - 5 comments

#60 - Transfers as Encounters

Pull Request - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#59 - Additional validation fixes and cleanup

Pull Request - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#58 - Fix argument parsing for py_mimic_fhir

Issue - State: closed - Opened by alistairewj over 2 years ago - 1 comment

#57 - Use a different variable than "HOST" in env

Issue - State: closed - Opened by alistairewj over 2 years ago - 1 comment

#56 - Update micro specimen codesystem

Issue - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#55 - Minor fixes across the demo

Pull Request - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#54 - Medication update

Pull Request - State: closed - Opened by alexmbennett2 over 2 years ago - 2 comments

#53 - Canonical ValueSet reference in CodeSystem

Issue - State: open - Opened by alexmbennett2 over 2 years ago - 7 comments

#52 - Experience on the Quickstart

Issue - State: closed - Opened by hannesUlrich over 2 years ago - 3 comments

#51 - Update medication mapping

Issue - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#50 - Add comments to ObservationMicroSusc and ObservationMicroTest

Issue - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#49 - Micro specimen add type

Issue - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#48 - Update create_fhir_tables with fhir_etl

Issue - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#47 - QA patient ethnicity/race

Issue - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#46 - Add CLI terminology functionality

Pull Request - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#45 - ICU Observation Updates

Pull Request - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#44 - Test ValueSet reference and expansion

Issue - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#43 - Limit in Observation Labs SQL

Issue - State: closed - Opened by hannesUlrich over 2 years ago - 1 comment

#42 - ICU observation warning

Issue - State: closed - Opened by alexmbennett2 over 2 years ago - 2 comments

#41 - How to handle lab results in comments

Issue - State: open - Opened by alexmbennett2 over 2 years ago - 5 comments

#40 - Lab Update

Pull Request - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#39 - Pull in transfers as location for encounters

Issue - State: closed - Opened by alexmbennett2 over 2 years ago - 7 comments

#38 - Review lab tables for more data to pull into fhir

Issue - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#37 - Refactor Bundler

Issue - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#36 - py_mimic_fhir CLI

Pull Request - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#35 - Added bundling and export functionality

Pull Request - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#34 - Java validator against local files

Issue - State: open - Opened by alexmbennett2 over 2 years ago

#33 - Add CLI functionality to py_mimic_fhir

Issue - State: closed - Opened by alexmbennett2 over 2 years ago - 2 comments

#32 - Export patient bundles (vs resources)

Issue - State: open - Opened by alexmbennett2 over 2 years ago

#31 - Timing estimate for full fhir generation in postgres

Issue - State: closed - Opened by alexmbennett2 over 2 years ago - 3 comments

#30 - Integrate terminology script into py_mimic_fhir

Issue - State: closed - Opened by alexmbennett2 over 2 years ago

#29 - Test demo data validate and export

Issue - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#28 - Update fhir_etl.subjects with demo script

Issue - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#27 - Clean HAPI Server - Deleting old data on HAPI

Issue - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment

#26 - Pull in demo subjects

Issue - State: closed - Opened by alexmbennett2 over 2 years ago

#25 - Look into passing bundles in parallel

Issue - State: closed - Opened by alexmbennett2 over 2 years ago - 3 comments

#24 - Calculate largest bundle, use as benchmark in tests

Issue - State: closed - Opened by alexmbennett2 over 2 years ago - 4 comments

#23 - Confirm bundles validating codes

Issue - State: closed - Opened by alexmbennett2 over 2 years ago - 1 comment