khanlab/snakebids issues and pull requests

#370 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago - 1 comment
Labels: maintenance

#369 - Update updated spec name, declare spec for tests

Pull Request - State: closed - Opened by pvandyken about 1 year ago - 2 comments
Labels: maintenance, skip_changelog

#368 - Exclude `run` from test strategy

Pull Request - State: closed - Opened by pvandyken about 1 year ago - 2 comments
Labels: bug, skip_changelog

#367 - Adding argument for metadata indexing by generate_inputs

Pull Request - State: closed - Opened by myousif9 about 1 year ago - 4 comments
Labels: enhancement

#366 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago - 1 comment
Labels: maintenance, skip_changelog

#365 - Add mechanism for regex filtering

Pull Request - State: closed - Opened by pvandyken about 1 year ago - 1 comment
Labels: enhancement

#364 - Restrict pulp version in template app

Pull Request - State: closed - Opened by pvandyken about 1 year ago - 2 comments
Labels: bug

#363 - Specifying --filter-x a second time overrides the first provision

Issue - State: open - Opened by pvandyken about 1 year ago

#362 - Major update to bidsapp

Pull Request - State: closed - Opened by pvandyken about 1 year ago - 2 comments
Labels: enhancement

#361 - Add testing for Python 3.12

Pull Request - State: closed - Opened by pvandyken about 1 year ago - 6 comments
Labels: maintenance

#360 - Exclude more non-functional lines from coverage

Pull Request - State: closed - Opened by pvandyken about 1 year ago - 1 comment
Labels: maintenance, skip_changelog

#359 - Manage doc deps with poetry

Pull Request - State: closed - Opened by pvandyken about 1 year ago - 2 comments
Labels: maintenance

#358 - Move example dataset from docs into template

Pull Request - State: closed - Opened by pvandyken about 1 year ago - 1 comment
Labels: bug

#357 - Add tests of pypi installation in nightly workflow

Pull Request - State: closed - Opened by pvandyken about 1 year ago - 4 comments
Labels: maintenance

#356 - Add test coverage

Pull Request - State: closed - Opened by pvandyken about 1 year ago - 3 comments
Labels: maintenance

#355 - Nightly Testing Suite

Pull Request - State: closed - Opened by pvandyken about 1 year ago - 3 comments
Labels: skip_changelog

#354 - Add new reviewers

Pull Request - State: closed - Opened by kaitj about 1 year ago
Labels: skip_changelog

#353 - Update URLs to new repo link

Pull Request - State: closed - Opened by kaitj about 1 year ago - 4 comments
Labels: maintenance

#352 - Allow builtins and resolved paths as cli types

Pull Request - State: closed - Opened by pvandyken about 1 year ago - 3 comments
Labels: enhancement

#351 - Dep updates and expansion of ruff CI

Pull Request - State: closed - Opened by pvandyken about 1 year ago
Labels: maintenance

#350 - Fix formatting of empty zip lists

Pull Request - State: closed - Opened by pvandyken about 1 year ago
Labels: bug

#349 - Transition to versioned bids functions

Pull Request - State: closed - Opened by pvandyken about 1 year ago - 9 comments
Labels: enhancement

#348 - Preserve order of entries in expand method

Pull Request - State: closed - Opened by pvandyken about 1 year ago
Labels: bug

#347 - No test dataset in snakebids bootstrap app

Issue - State: closed - Opened by pvandyken about 1 year ago - 3 comments

#346 - `BidsComponent.expand()` fails to preserve order

Issue - State: closed - Opened by pvandyken about 1 year ago
Labels: bug

#345 - Port forward 0.9.x changes into 0.10.x

Pull Request - State: closed - Opened by pvandyken about 1 year ago
Labels: maintenance, skip_changelog

#344 - Overhaul global filtering of participants

Pull Request - State: closed - Opened by pvandyken over 1 year ago - 2 comments
Labels: bug

#343 - Cannot use `--participant-label` and `--exclude-participant-label` simultaneously

Issue - State: closed - Opened by pvandyken over 1 year ago - 3 comments
Labels: enhancement

#342 - Remove myself from reviewer list

Pull Request - State: closed - Opened by tkkuehn over 1 year ago - 1 comment
Labels: skip_changelog

#341 - Refactor install steps into resusable workflow

Pull Request - State: closed - Opened by pvandyken over 1 year ago - 1 comment
Labels: maintenance

#340 - Remove dependency upper-caps and update

Pull Request - State: closed - Opened by pvandyken over 1 year ago - 4 comments
Labels: maintenance

#339 - `_format_zip_lists` breaks when formatting an empty zip list

Issue - State: closed - Opened by pvandyken over 1 year ago
Labels: bug

#338 - Add pytest-split and pytest-xdist

Pull Request - State: closed - Opened by pvandyken over 1 year ago - 4 comments
Labels: maintenance

#337 - Fix typo in BidsValidator plugin

Pull Request - State: closed - Opened by pvandyken over 1 year ago
Labels: bug

#336 - Overhaul `snakebids create`

Pull Request - State: closed - Opened by pvandyken over 1 year ago - 6 comments
Labels: enhancement

#335 - Extension of `BidsComponent.filter` api

Issue - State: open - Opened by pvandyken over 1 year ago

#334 - Add deprecation mechanism to old pybidsdb vals

Pull Request - State: closed - Opened by pvandyken over 1 year ago
Labels: bug

#333 - `pybids_db_dir` was eliminated without warning, causing migration issues

Issue - State: closed - Opened by pvandyken over 1 year ago - 2 comments

#332 - Refactor filter_list to use RegexContainer

Pull Request - State: closed - Opened by pvandyken over 1 year ago
Labels: maintenance

#331 - Add poetry lock check

Pull Request - State: closed - Opened by pvandyken over 1 year ago - 1 comment
Labels: maintenance

#330 - Update dependencies and pyright version

Pull Request - State: closed - Opened by pvandyken over 1 year ago
Labels: maintenance

#329 - Port documentation changes

Pull Request - State: closed - Opened by pvandyken over 1 year ago
Labels: skip_changelog

#328 - Update docs dependencies

Pull Request - State: closed - Opened by pvandyken over 1 year ago - 1 comment

#327 - Port hotfixes from 0.9.x

Pull Request - State: closed - Opened by pvandyken over 1 year ago
Labels: bug

#326 - Fix version fetching in readthedocs build

Pull Request - State: closed - Opened by pvandyken over 1 year ago - 1 comment
Labels: bug, documentation

#326 - Fix version fetching in readthedocs build

Pull Request - State: closed - Opened by pvandyken over 1 year ago - 1 comment
Labels: bug, documentation

#325 - HOTFIX Fix pybidsdb path resolution

Pull Request - State: closed - Opened by pvandyken over 1 year ago
Labels: bug

#325 - HOTFIX Fix pybidsdb path resolution

Pull Request - State: closed - Opened by pvandyken over 1 year ago
Labels: bug

#324 - Implement Bids Spec files

Pull Request - State: closed - Opened by pvandyken over 1 year ago - 1 comment
Labels: maintenance

#323 - Fix mistaken comparison of BidsEntity to str sets

Pull Request - State: closed - Opened by pvandyken over 1 year ago
Labels: bug, skip_changelog

#323 - Fix mistaken comparison of BidsEntity to str sets

Pull Request - State: closed - Opened by pvandyken over 1 year ago
Labels: bug, skip_changelog

#322 - Drop support for Python 3.7

Pull Request - State: closed - Opened by pvandyken over 1 year ago - 1 comment
Labels: breaking

#322 - Drop support for Python 3.7

Pull Request - State: closed - Opened by pvandyken over 1 year ago - 1 comment
Labels: breaking

#321 - SnakeBidsApp Assumes filters are present

Issue - State: open - Opened by pvandyken over 1 year ago
Labels: bug

#320 - Update scipy constraints for py3.8

Pull Request - State: closed - Opened by kaitj over 1 year ago - 3 comments
Labels: maintenance

#320 - Update scipy constraints for py3.8

Pull Request - State: closed - Opened by kaitj over 1 year ago - 3 comments
Labels: maintenance

#319 - Scipy dependency

Issue - State: closed - Opened by kaitj over 1 year ago
Labels: bug

#319 - Scipy dependency

Issue - State: closed - Opened by kaitj over 1 year ago
Labels: bug

#317 - fixing small virtual env activation typo in tutorial.md

Pull Request - State: closed - Opened by ataha24 over 1 year ago
Labels: documentation

#317 - fixing small virtual env activation typo in tutorial.md

Pull Request - State: closed - Opened by ataha24 over 1 year ago
Labels: documentation

#316 - Update cookiecutter

Pull Request - State: closed - Opened by kaitj over 1 year ago - 4 comments
Labels: maintenance

#316 - Update cookiecutter

Pull Request - State: closed - Opened by kaitj over 1 year ago - 4 comments
Labels: maintenance

#315 - Drop Support for Py37

Issue - State: closed - Opened by pvandyken over 1 year ago - 1 comment
Labels: breaking

#315 - Drop Support for Py37

Issue - State: closed - Opened by pvandyken over 1 year ago - 1 comment
Labels: breaking

#314 - Allow Booleans in filter lists

Pull Request - State: closed - Opened by pvandyken over 1 year ago - 2 comments
Labels: bug

#313 - Use PEP 621-based pyproject.toml in snakebids create

Issue - State: closed - Opened by tkkuehn over 1 year ago - 3 comments

#312 - Add plugin reference page to docs

Pull Request - State: closed - Opened by kaitj over 1 year ago
Labels: documentation

#311 - Plugins page in docs

Issue - State: closed - Opened by kaitj over 1 year ago
Labels: documentation

#311 - Plugins page in docs

Issue - State: closed - Opened by kaitj over 1 year ago
Labels: documentation

#310 - Always set SnakeBidsApp.args in run_snakemake

Pull Request - State: closed - Opened by tkkuehn over 1 year ago
Labels: maintenance

#310 - Always set SnakeBidsApp.args in run_snakemake

Pull Request - State: closed - Opened by tkkuehn over 1 year ago
Labels: maintenance

#309 - Boolean CLI filters

Pull Request - State: closed - Opened by tkkuehn over 1 year ago - 1 comment
Labels: enhancement

#309 - Boolean CLI filters

Pull Request - State: closed - Opened by tkkuehn over 1 year ago - 1 comment
Labels: enhancement

#308 - Save more provenance information

Pull Request - State: closed - Opened by tkkuehn over 1 year ago - 9 comments
Labels: enhancement

#307 - Update app creation instructions

Issue - State: closed - Opened by kaitj over 1 year ago - 2 comments
Labels: documentation

#307 - Update app creation instructions

Issue - State: closed - Opened by kaitj over 1 year ago - 2 comments
Labels: documentation

#306 - Update cookiecutter template

Pull Request - State: closed - Opened by kaitj over 1 year ago - 1 comment
Labels: maintenance

#306 - Update cookiecutter template

Pull Request - State: closed - Opened by kaitj over 1 year ago - 1 comment
Labels: maintenance

#305 - Test magic args

Pull Request - State: closed - Opened by tkkuehn over 1 year ago - 3 comments
Labels: test

#305 - Test magic args

Pull Request - State: closed - Opened by tkkuehn over 1 year ago - 3 comments
Labels: test

#304 - `export_sourcedir` plugin

Issue - State: open - Opened by pvandyken over 1 year ago - 1 comment
Labels: enhancement, plugin

#303 - exclude_participant_label and filter_component incompatible in some cases

Issue - State: closed - Opened by tkkuehn over 1 year ago

#302 - Expect plugins to be callable classes

Issue - State: open - Opened by tkkuehn over 1 year ago - 1 comment

#302 - Expect plugins to be callable classes

Issue - State: open - Opened by tkkuehn over 1 year ago - 1 comment

#301 - Split bids into its own repository

Issue - State: closed - Opened by tkkuehn over 1 year ago - 1 comment

#300 - Add DuplicateComponentError for more precision

Pull Request - State: closed - Opened by tkkuehn over 1 year ago
Labels: maintenance

#300 - Add DuplicateComponentError for more precision

Pull Request - State: closed - Opened by tkkuehn over 1 year ago
Labels: maintenance

#299 - Need to Narrow down the `ValueError` thrown in `BidsDataset.from_iterable()`

Issue - State: closed - Opened by pvandyken over 1 year ago

#299 - Need to Narrow down the `ValueError` thrown in `BidsDataset.from_iterable()`

Issue - State: closed - Opened by pvandyken over 1 year ago

#298 - Update README

Pull Request - State: closed - Opened by kaitj over 1 year ago
Labels: documentation

#297 - Raise error on missing `custom_path` and invalid `bids_dir`

Pull Request - State: closed - Opened by kaitj over 1 year ago
Labels: maintenance

#296 - Update pybids_db parameters

Pull Request - State: closed - Opened by kaitj over 1 year ago - 1 comment
Labels: maintenance, deprecation

#296 - Update pybids_db parameters

Pull Request - State: closed - Opened by kaitj over 1 year ago - 1 comment
Labels: maintenance, deprecation

#295 - Make the target easier to override in plugins

Issue - State: closed - Opened by pvandyken over 1 year ago - 1 comment
Labels: enhancement

#294 - Allow builtins as types

Issue - State: closed - Opened by pvandyken over 1 year ago
Labels: enhancement

#293 - Mandatory vs Optional components in `pybids_inputs`

Issue - State: open - Opened by pvandyken over 1 year ago - 2 comments
Labels: enhancement

#293 - Mandatory vs Optional components in `pybids_inputs`

Issue - State: open - Opened by pvandyken over 1 year ago - 2 comments
Labels: enhancement

#292 - Improve implementation of `get()` in `MultiSelectDict`

Issue - State: open - Opened by pvandyken over 1 year ago - 2 comments
Labels: enhancement

#291 - Add BidsValidator Plugin

Pull Request - State: closed - Opened by kaitj almost 2 years ago - 4 comments
Labels: enhancement

#291 - Add BidsValidator Plugin

Pull Request - State: closed - Opened by kaitj almost 2 years ago - 4 comments
Labels: enhancement

GitHub / khanlab/snakebids issues and pull requests