Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / khanlab/snakebids issues and pull requests

#465 - Pass CI tests on main

Pull Request - State: closed - Opened by Dhananjhay 11 days ago - 4 comments
Labels: maintenance

#464 - single file run

Issue - State: closed - Opened by jordandekraker 12 days ago - 2 comments

#463 - bids function cannot generate correct path for freesurfer outputs.

Issue - State: closed - Opened by zihuaihuai 16 days ago - 2 comments

#462 - remove the leading ./ from paths created in snakebids

Pull Request - State: closed - Opened by akhanf about 2 months ago - 3 comments
Labels: bug

#461 - Updates to pybids 0.18

Pull Request - State: open - Opened by akhanf about 2 months ago - 2 comments

#461 - Updates to pybids 0.18

Pull Request - State: open - Opened by akhanf about 2 months ago - 2 comments

#460 - [.github/workflows]: Bump codecov/codecov-action from 4 to 5 in the github-actions group

Pull Request - State: open - Opened by dependabot[bot] 2 months ago
Labels: skip_changelog

#459 - Support for conda

Pull Request - State: closed - Opened by Dhananjhay 3 months ago - 5 comments
Labels: enhancement

#458 - Update dependencies

Pull Request - State: open - Opened by pvandyken 4 months ago
Labels: maintenance

#456 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] 6 months ago
Labels: maintenance, skip_changelog

#455 - Deduplicate wildcards when parsing components

Pull Request - State: closed - Opened by pvandyken 7 months ago - 1 comment
Labels: bug

#454 - Transition from zip-list to entry core

Pull Request - State: open - Opened by pvandyken 7 months ago
Labels: enhancement, maintenance

#453 - Update dependencies in template documentation

Pull Request - State: closed - Opened by pvandyken 7 months ago - 2 comments
Labels: bug

#453 - Update dependencies in template documentation

Pull Request - State: closed - Opened by pvandyken 7 months ago - 2 comments
Labels: bug

#452 - Add compatibility for urls in `generate_inputs`

Pull Request - State: closed - Opened by Karl5766 7 months ago - 11 comments
Labels: enhancement

#451 - Support for Cloud Storage URLs (with universal_pathlib)

Issue - State: open - Opened by pvandyken 7 months ago
Labels: enhancement

#451 - Support for Cloud Storage URLs (with universal_pathlib)

Issue - State: closed - Opened by pvandyken 7 months ago - 3 comments
Labels: enhancement

#449 - Add codespell support (config, workflow to detect/not fix) and make it fix few typos

Pull Request - State: closed - Opened by yarikoptic 7 months ago - 7 comments
Labels: maintenance

#449 - Add codespell support (config, workflow to detect/not fix) and make it fix few typos

Pull Request - State: open - Opened by yarikoptic 7 months ago - 1 comment
Labels: maintenance

#448 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] 7 months ago
Labels: maintenance, skip_changelog

#446 - Do coverage upload in one workflow

Pull Request - State: closed - Opened by pvandyken 7 months ago
Labels: bug, skip_changelog

#445 - Do codecov upload with tests and delay notifcation

Pull Request - State: closed - Opened by pvandyken 7 months ago
Labels: bug, skip_changelog

#445 - Do codecov upload with tests and delay notifcation

Pull Request - State: closed - Opened by pvandyken 7 months ago
Labels: bug, skip_changelog

#444 - Specify sha and PR number in codecov upload

Pull Request - State: closed - Opened by pvandyken 7 months ago
Labels: maintenance, skip_changelog

#444 - Specify sha and PR number in codecov upload

Pull Request - State: closed - Opened by pvandyken 7 months ago
Labels: maintenance, skip_changelog

#443 - Add CLI argument in BidsValidator plugin

Pull Request - State: closed - Opened by pvandyken 7 months ago - 1 comment
Labels: enhancement

#442 - Allow regex from the cli

Pull Request - State: closed - Opened by pvandyken 7 months ago - 1 comment
Labels: enhancement

#441 - Add pattern to coverage upload action

Pull Request - State: closed - Opened by pvandyken 7 months ago
Labels: maintenance

#440 - Fix comparison syntax in tet counting logic

Pull Request - State: closed - Opened by pvandyken 7 months ago
Labels: bug, skip_changelog

#439 - Update dependencies

Pull Request - State: closed - Opened by pvandyken 7 months ago
Labels: maintenance

#437 - Using dictionary operations for `bids()` and `expand()`

Issue - State: closed - Opened by Karl5766 7 months ago
Labels: enhancement

#435 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago
Labels: maintenance, skip_changelog

#435 - Merge updated test timings

Pull Request - State: open - Opened by github-actions[bot] 8 months ago
Labels: maintenance, skip_changelog

#434 - Snakebids create docs

Issue - State: open - Opened by akhanf 8 months ago - 3 comments

#434 - Snakebids create docs

Issue - State: open - Opened by akhanf 8 months ago - 1 comment

#433 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] 9 months ago
Labels: maintenance, skip_changelog

#432 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] 9 months ago
Labels: maintenance, skip_changelog

#431 - Add name to upload_coverage

Pull Request - State: closed - Opened by pvandyken 9 months ago
Labels: skip_changelog

#430 - Run tests only when snakebids or scripts folder updated

Pull Request - State: closed - Opened by pvandyken 9 months ago
Labels: maintenance

#429 - Move upload_coverage to seperate workflow

Pull Request - State: closed - Opened by pvandyken 9 months ago
Labels: maintenance

#428 - Add labeller action

Pull Request - State: closed - Opened by pvandyken 9 months ago - 1 comment
Labels: maintenance

#427 - Prevent bids values with leading 0s in tests

Pull Request - State: closed - Opened by pvandyken 9 months ago - 1 comment
Labels: bug

#426 - Add skip_changelog label to test timing update PRs

Pull Request - State: closed - Opened by pvandyken 9 months ago
Labels: maintenance

#425 - Update argument handling for --derivatives

Pull Request - State: closed - Opened by pvandyken 9 months ago - 1 comment
Labels: bug

#424 - Remove return from run method on Runner

Pull Request - State: closed - Opened by pvandyken 9 months ago - 1 comment
Labels: bug

#423 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] 9 months ago
Labels: maintenance, skip_changelog

#422 - Wildcards added via cli are not deduplicated

Issue - State: closed - Opened by pvandyken 9 months ago
Labels: bug

#421 - Add converters to SnakeBidsApp

Pull Request - State: closed - Opened by pvandyken 9 months ago - 1 comment
Labels: bug

#420 - Update dependencies

Pull Request - State: closed - Opened by pvandyken 9 months ago - 1 comment
Labels: maintenance

#419 - Another fix to test counting

Pull Request - State: closed - Opened by pvandyken 9 months ago - 1 comment

#418 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] 9 months ago
Labels: maintenance

#417 - Add hook to update and read argv before parsing

Pull Request - State: closed - Opened by pvandyken 9 months ago - 1 comment
Labels: enhancement

#416 - Add missing spaces to default help for bidsargs

Pull Request - State: closed - Opened by pvandyken 9 months ago - 1 comment
Labels: bug

#415 - Update maximum python version in template

Pull Request - State: closed - Opened by pvandyken 9 months ago - 1 comment
Labels: maintenance

#414 - Fix test-counting code

Pull Request - State: closed - Opened by pvandyken 10 months ago - 1 comment
Labels: maintenance

#413 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] 10 months ago
Labels: maintenance, skip_changelog

#412 - Version plugin does not add CLI parameter

Issue - State: open - Opened by pvandyken 10 months ago

#411 - Default help messages for BidsArgs is missing spaces

Issue - State: closed - Opened by pvandyken 10 months ago
Labels: bug

#410 - Template still imposes python < 3.13

Issue - State: closed - Opened by pvandyken 10 months ago

#409 - Add codecov badge

Pull Request - State: closed - Opened by pvandyken 10 months ago - 1 comment
Labels: maintenance

#408 - Update tutorial for new bidsapp

Pull Request - State: closed - Opened by pvandyken 10 months ago - 1 comment
Labels: documentation

#407 - Remove reproducible-containers/buildkit-cache-dance

Pull Request - State: closed - Opened by pvandyken 10 months ago - 1 comment
Labels: maintenance, skip_changelog

#406 - Add support for snakemake > 8.0

Pull Request - State: closed - Opened by pvandyken 10 months ago
Labels: enhancement

#405 - Fix flaky template tests

Pull Request - State: closed - Opened by pvandyken 10 months ago
Labels: bug

#404 - Allow simult. use of partic incl and excl flags

Pull Request - State: closed - Opened by pvandyken 10 months ago - 1 comment
Labels: enhancement

#403 - Pin attrs to 22.2.0

Pull Request - State: closed - Opened by pvandyken 10 months ago - 1 comment
Labels: bug

#402 - Prevent installation of docutils==0.21.post1

Pull Request - State: closed - Opened by pvandyken 10 months ago - 1 comment
Labels: bug

#401 - Updates to get working with snakemake>=8.0

Pull Request - State: closed - Opened by akhanf 10 months ago - 4 comments

#399 - Update reviewer list

Pull Request - State: closed - Opened by kaitj 11 months ago - 2 comments
Labels: skip_changelog

#398 - attrs version pinning?

Issue - State: closed - Opened by akhanf 11 months ago - 8 comments

#397 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] 11 months ago
Labels: maintenance

#396 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] 11 months ago
Labels: maintenance, skip_changelog

#395 - [.github/workflows]: Bump the github-actions group with 1 update

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: skip_changelog

#394 - Correctly activate virtualenv in readthedocs build

Pull Request - State: closed - Opened by pvandyken 12 months ago - 1 comment
Labels: bug

#393 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] 12 months ago - 1 comment
Labels: maintenance

#392 - Fix docs template so that it builds

Pull Request - State: closed - Opened by pvandyken 12 months ago - 1 comment
Labels: bug

#391 - Documentation stub has numerous problems

Issue - State: closed - Opened by pvandyken 12 months ago

#390 - Update the warning format to be more readable

Pull Request - State: closed - Opened by pvandyken 12 months ago - 13 comments

#389 - Eliminate initial "_" when suffix is only entity

Pull Request - State: closed - Opened by pvandyken 12 months ago - 1 comment
Labels: bug

#388 - Update auto-assign actions workflow

Pull Request - State: closed - Opened by kaitj 12 months ago - 1 comment
Labels: skip_changelog

#386 - Trigger CI failure if codecov upload fails

Pull Request - State: closed - Opened by pvandyken 12 months ago - 1 comment
Labels: skip_changelog

#385 - Update dependabot config

Pull Request - State: closed - Opened by kaitj 12 months ago - 3 comments
Labels: skip_changelog

#384 - Bump the github-actions group with 5 updates

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: skip_changelog

#383 - Add dependabot config

Pull Request - State: closed - Opened by kaitj 12 months ago - 2 comments
Labels: skip_changelog

#382 - Prevent custom entities from drawing standard ent

Pull Request - State: closed - Opened by pvandyken 12 months ago - 2 comments
Labels: bug

#381 - Add an option in generate_inputs to ignore files from pybids parsing?

Issue - State: closed - Opened by akhanf 12 months ago - 2 comments

#380 - Move codecoverage upload to seperate job

Pull Request - State: closed - Opened by pvandyken 12 months ago - 2 comments
Labels: maintenance

#379 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] 12 months ago
Labels: maintenance, skip_changelog

#378 - Expand paths unaltered when comp has no wcards

Pull Request - State: closed - Opened by pvandyken 12 months ago - 2 comments
Labels: bug

#377 - Fix warning messages

Pull Request - State: closed - Opened by pvandyken 12 months ago - 2 comments
Labels: bug

#376 - Allow custom snakebids version in app template

Pull Request - State: closed - Opened by pvandyken 12 months ago - 1 comment
Labels: maintenance

#375 - Default to case-insensitive search for regex

Pull Request - State: closed - Opened by pvandyken 12 months ago - 1 comment
Labels: bug

#374 - Update khanlab/actions integration

Pull Request - State: closed - Opened by pvandyken 12 months ago - 1 comment
Labels: maintenance

#373 - Clean old tests when recalculating durations

Pull Request - State: closed - Opened by pvandyken 12 months ago - 1 comment
Labels: maintenance

#372 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] 12 months ago
Labels: maintenance

#371 - `BidsComponent.expand()` returns nothing when no ziplist data

Issue - State: closed - Opened by pvandyken about 1 year ago
Labels: bug