Ecosyste.ms: Issues

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GitHub / khanlab/snakebids issues and pull requests

#435 - Merge updated test timings

Pull Request - State: open - Opened by github-actions[bot] about 1 month ago
Labels: maintenance, skip_changelog

#435 - Merge updated test timings

Pull Request - State: open - Opened by github-actions[bot] about 1 month ago
Labels: maintenance, skip_changelog

#434 - Snakebids create docs

Issue - State: open - Opened by akhanf about 1 month ago - 1 comment

#434 - Snakebids create docs

Issue - State: open - Opened by akhanf about 1 month ago - 1 comment

#433 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] about 2 months ago
Labels: maintenance, skip_changelog

#432 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] about 2 months ago
Labels: maintenance, skip_changelog

#431 - Add name to upload_coverage

Pull Request - State: closed - Opened by pvandyken about 2 months ago
Labels: skip_changelog

#430 - Run tests only when snakebids or scripts folder updated

Pull Request - State: closed - Opened by pvandyken about 2 months ago
Labels: maintenance

#429 - Move upload_coverage to seperate workflow

Pull Request - State: closed - Opened by pvandyken about 2 months ago
Labels: maintenance

#428 - Add labeller action

Pull Request - State: closed - Opened by pvandyken about 2 months ago - 1 comment
Labels: maintenance

#427 - Prevent bids values with leading 0s in tests

Pull Request - State: closed - Opened by pvandyken about 2 months ago - 1 comment
Labels: bug

#426 - Add skip_changelog label to test timing update PRs

Pull Request - State: closed - Opened by pvandyken about 2 months ago
Labels: maintenance

#425 - Update argument handling for --derivatives

Pull Request - State: closed - Opened by pvandyken about 2 months ago - 1 comment
Labels: bug

#424 - Remove return from run method on Runner

Pull Request - State: closed - Opened by pvandyken about 2 months ago - 1 comment
Labels: bug

#423 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] about 2 months ago
Labels: maintenance, skip_changelog

#422 - Wildcards added via cli are not deduplicated

Issue - State: open - Opened by pvandyken about 2 months ago
Labels: bug

#421 - Add converters to SnakeBidsApp

Pull Request - State: closed - Opened by pvandyken 2 months ago - 1 comment
Labels: bug

#420 - Update dependencies

Pull Request - State: closed - Opened by pvandyken 2 months ago - 1 comment
Labels: maintenance

#419 - Another fix to test counting

Pull Request - State: closed - Opened by pvandyken 2 months ago - 1 comment

#418 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] 2 months ago
Labels: maintenance

#417 - Add hook to update and read argv before parsing

Pull Request - State: closed - Opened by pvandyken 2 months ago - 1 comment
Labels: enhancement

#416 - Add missing spaces to default help for bidsargs

Pull Request - State: closed - Opened by pvandyken 2 months ago - 1 comment
Labels: bug

#415 - Update maximum python version in template

Pull Request - State: closed - Opened by pvandyken 2 months ago - 1 comment
Labels: maintenance

#414 - Fix test-counting code

Pull Request - State: closed - Opened by pvandyken 2 months ago - 1 comment
Labels: maintenance

#413 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] 2 months ago
Labels: maintenance, skip_changelog

#412 - Version plugin does not add CLI parameter

Issue - State: open - Opened by pvandyken 2 months ago

#411 - Default help messages for BidsArgs is missing spaces

Issue - State: closed - Opened by pvandyken 2 months ago
Labels: bug

#410 - Template still imposes python < 3.13

Issue - State: closed - Opened by pvandyken 2 months ago

#409 - Add codecov badge

Pull Request - State: closed - Opened by pvandyken 3 months ago - 1 comment
Labels: maintenance

#408 - Update tutorial for new bidsapp

Pull Request - State: closed - Opened by pvandyken 3 months ago - 1 comment
Labels: documentation

#407 - Remove reproducible-containers/buildkit-cache-dance

Pull Request - State: closed - Opened by pvandyken 3 months ago - 1 comment
Labels: maintenance, skip_changelog

#406 - Add support for snakemake > 8.0

Pull Request - State: closed - Opened by pvandyken 3 months ago
Labels: enhancement

#405 - Fix flaky template tests

Pull Request - State: closed - Opened by pvandyken 3 months ago
Labels: bug

#404 - Allow simult. use of partic incl and excl flags

Pull Request - State: closed - Opened by pvandyken 3 months ago - 1 comment
Labels: enhancement

#403 - Pin attrs to 22.2.0

Pull Request - State: closed - Opened by pvandyken 3 months ago - 1 comment
Labels: bug

#402 - Prevent installation of docutils==0.21.post1

Pull Request - State: closed - Opened by pvandyken 3 months ago - 1 comment
Labels: bug

#401 - Updates to get working with snakemake>=8.0

Pull Request - State: closed - Opened by akhanf 3 months ago - 4 comments

#399 - Update reviewer list

Pull Request - State: closed - Opened by kaitj 4 months ago - 2 comments
Labels: skip_changelog

#398 - attrs version pinning?

Issue - State: closed - Opened by akhanf 4 months ago - 8 comments

#397 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] 4 months ago
Labels: maintenance

#396 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] 4 months ago
Labels: maintenance, skip_changelog

#395 - [.github/workflows]: Bump the github-actions group with 1 update

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: skip_changelog

#394 - Correctly activate virtualenv in readthedocs build

Pull Request - State: closed - Opened by pvandyken 4 months ago - 1 comment
Labels: bug

#393 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] 4 months ago - 1 comment
Labels: maintenance

#392 - Fix docs template so that it builds

Pull Request - State: closed - Opened by pvandyken 4 months ago - 1 comment
Labels: bug

#391 - Documentation stub has numerous problems

Issue - State: closed - Opened by pvandyken 4 months ago

#390 - Update the warning format to be more readable

Pull Request - State: closed - Opened by pvandyken 4 months ago - 13 comments

#389 - Eliminate initial "_" when suffix is only entity

Pull Request - State: closed - Opened by pvandyken 4 months ago - 1 comment
Labels: bug

#388 - Update auto-assign actions workflow

Pull Request - State: closed - Opened by kaitj 4 months ago - 1 comment
Labels: skip_changelog

#386 - Trigger CI failure if codecov upload fails

Pull Request - State: closed - Opened by pvandyken 4 months ago - 1 comment
Labels: skip_changelog

#385 - Update dependabot config

Pull Request - State: closed - Opened by kaitj 4 months ago - 3 comments
Labels: skip_changelog

#384 - Bump the github-actions group with 5 updates

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: skip_changelog

#383 - Add dependabot config

Pull Request - State: closed - Opened by kaitj 4 months ago - 2 comments
Labels: skip_changelog

#382 - Prevent custom entities from drawing standard ent

Pull Request - State: closed - Opened by pvandyken 5 months ago - 2 comments
Labels: bug

#381 - Add an option in generate_inputs to ignore files from pybids parsing?

Issue - State: closed - Opened by akhanf 5 months ago - 2 comments

#380 - Move codecoverage upload to seperate job

Pull Request - State: closed - Opened by pvandyken 5 months ago - 2 comments
Labels: maintenance

#379 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] 5 months ago
Labels: maintenance, skip_changelog

#378 - Expand paths unaltered when comp has no wcards

Pull Request - State: closed - Opened by pvandyken 5 months ago - 2 comments
Labels: bug

#377 - Fix warning messages

Pull Request - State: closed - Opened by pvandyken 5 months ago - 2 comments
Labels: bug

#376 - Allow custom snakebids version in app template

Pull Request - State: closed - Opened by pvandyken 5 months ago - 1 comment
Labels: maintenance

#375 - Default to case-insensitive search for regex

Pull Request - State: closed - Opened by pvandyken 5 months ago - 1 comment
Labels: bug

#374 - Update khanlab/actions integration

Pull Request - State: closed - Opened by pvandyken 5 months ago - 1 comment
Labels: maintenance

#373 - Clean old tests when recalculating durations

Pull Request - State: closed - Opened by pvandyken 5 months ago - 1 comment
Labels: maintenance

#372 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] 5 months ago
Labels: maintenance

#371 - `BidsComponent.expand()` returns nothing when no ziplist data

Issue - State: closed - Opened by pvandyken 5 months ago
Labels: bug

#370 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] 5 months ago - 1 comment
Labels: maintenance

#369 - Update updated spec name, declare spec for tests

Pull Request - State: closed - Opened by pvandyken 5 months ago - 2 comments
Labels: maintenance, skip_changelog

#368 - Exclude `run` from test strategy

Pull Request - State: closed - Opened by pvandyken 5 months ago - 2 comments
Labels: bug, skip_changelog

#367 - Adding argument for metadata indexing by generate_inputs

Pull Request - State: closed - Opened by myousif9 5 months ago - 4 comments
Labels: enhancement

#366 - Merge updated test timings

Pull Request - State: closed - Opened by github-actions[bot] 5 months ago - 1 comment
Labels: maintenance, skip_changelog

#365 - Add mechanism for regex filtering

Pull Request - State: closed - Opened by pvandyken 5 months ago - 1 comment
Labels: enhancement

#364 - Restrict pulp version in template app

Pull Request - State: closed - Opened by pvandyken 6 months ago - 2 comments
Labels: bug

#362 - Major update to bidsapp

Pull Request - State: closed - Opened by pvandyken 6 months ago - 2 comments
Labels: enhancement

#361 - Add testing for Python 3.12

Pull Request - State: closed - Opened by pvandyken 7 months ago - 6 comments
Labels: maintenance

#360 - Exclude more non-functional lines from coverage

Pull Request - State: closed - Opened by pvandyken 7 months ago - 1 comment
Labels: maintenance, skip_changelog

#359 - Manage doc deps with poetry

Pull Request - State: closed - Opened by pvandyken 7 months ago - 2 comments
Labels: maintenance

#358 - Move example dataset from docs into template

Pull Request - State: closed - Opened by pvandyken 7 months ago - 1 comment
Labels: bug

#357 - Add tests of pypi installation in nightly workflow

Pull Request - State: closed - Opened by pvandyken 7 months ago - 4 comments
Labels: maintenance

#356 - Add test coverage

Pull Request - State: closed - Opened by pvandyken 7 months ago - 3 comments
Labels: maintenance

#355 - Nightly Testing Suite

Pull Request - State: closed - Opened by pvandyken 7 months ago - 3 comments
Labels: skip_changelog

#354 - Add new reviewers

Pull Request - State: closed - Opened by kaitj 7 months ago
Labels: skip_changelog

#353 - Update URLs to new repo link

Pull Request - State: closed - Opened by kaitj 7 months ago - 4 comments
Labels: maintenance

#352 - Allow builtins and resolved paths as cli types

Pull Request - State: closed - Opened by pvandyken 7 months ago - 3 comments
Labels: enhancement

#351 - Dep updates and expansion of ruff CI

Pull Request - State: closed - Opened by pvandyken 7 months ago
Labels: maintenance

#350 - Fix formatting of empty zip lists

Pull Request - State: closed - Opened by pvandyken 7 months ago
Labels: bug

#349 - Transition to versioned bids functions

Pull Request - State: closed - Opened by pvandyken 7 months ago - 9 comments
Labels: enhancement

#348 - Preserve order of entries in expand method

Pull Request - State: closed - Opened by pvandyken 7 months ago
Labels: bug

#347 - No test dataset in snakebids bootstrap app

Issue - State: closed - Opened by pvandyken 7 months ago - 3 comments

#346 - `BidsComponent.expand()` fails to preserve order

Issue - State: closed - Opened by pvandyken 7 months ago
Labels: bug

#345 - Port forward 0.9.x changes into 0.10.x

Pull Request - State: closed - Opened by pvandyken 7 months ago
Labels: maintenance, skip_changelog

#344 - Overhaul global filtering of participants

Pull Request - State: closed - Opened by pvandyken 9 months ago - 2 comments
Labels: bug

#343 - Cannot use `--participant-label` and `--exclude-participant-label` simultaneously

Issue - State: closed - Opened by pvandyken 9 months ago - 3 comments
Labels: enhancement

#342 - Remove myself from reviewer list

Pull Request - State: closed - Opened by tkkuehn 9 months ago - 1 comment
Labels: skip_changelog

#341 - Refactor install steps into resusable workflow

Pull Request - State: closed - Opened by pvandyken 10 months ago - 1 comment
Labels: maintenance

#340 - Remove dependency upper-caps and update

Pull Request - State: closed - Opened by pvandyken 10 months ago - 4 comments
Labels: maintenance

#339 - `_format_zip_lists` breaks when formatting an empty zip list

Issue - State: closed - Opened by pvandyken 10 months ago
Labels: bug

#338 - Add pytest-split and pytest-xdist

Pull Request - State: closed - Opened by pvandyken 10 months ago - 4 comments
Labels: maintenance