Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / khanlab/hippunfold issues and pull requests
#317 - Jordandekraker patch 1
Pull Request -
State: closed - Opened by jordandekraker 2 months ago
#316 - Revert "Update Dockerfile to latest version with dependencies"
Pull Request -
State: closed - Opened by jordandekraker 2 months ago
#315 - Update Dockerfile to latest version with dependencies
Pull Request -
State: closed - Opened by jordandekraker 2 months ago
Labels: bug
#314 - Import patch
Pull Request -
State: closed - Opened by jordandekraker 2 months ago
Labels: bug
#313 - fix dependency versions for snakebids, pulp
Pull Request -
State: closed - Opened by jordandekraker 2 months ago
Labels: bug
#312 - broken workflow, possibly in dependencies
Issue -
State: closed - Opened by jordandekraker 2 months ago
- 5 comments
#311 - wetrun testing
Issue -
State: open - Opened by jordandekraker 3 months ago
#310 - Template inject Lflip vs R
Pull Request -
State: closed - Opened by jordandekraker 3 months ago
- 1 comment
#309 - bigbrain template laplace coords added
Pull Request -
State: closed - Opened by jordandekraker 3 months ago
#308 - Temporry files writen to home directory
Issue -
State: open - Opened by JosePMarques 3 months ago
- 5 comments
#307 - patch-templateseg-dHCP
Pull Request -
State: closed - Opened by jordandekraker 3 months ago
- 2 comments
#306 - use naturalneighbour interpolation instead of linear barycentric
Pull Request -
State: closed - Opened by jordandekraker 3 months ago
- 4 comments
Labels: breaking
#305 - Naturalinterpolation
Pull Request -
State: closed - Opened by jordandekraker 3 months ago
- 1 comment
Labels: breaking
#304 - added coords for templateseg workflow
Pull Request -
State: closed - Opened by jordandekraker 3 months ago
#303 - Wet-run test data
Pull Request -
State: closed - Opened by jordandekraker 3 months ago
#302 - AD branch
Pull Request -
State: closed - Opened by Bradley-Karat 4 months ago
#301 - WorkflowError in file /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/Snakefile, line 7: Config file must be given as JSON or YAML with keys at top level.
Issue -
State: open - Opened by VAMMGA 4 months ago
- 3 comments
#300 - vertex cleaning, especially for DG
Pull Request -
State: closed - Opened by jordandekraker 4 months ago
- 3 comments
Labels: breaking
#299 - ABAv3 mouse atlas+template
Pull Request -
State: closed - Opened by jordandekraker 4 months ago
#298 - expanded DG
Issue -
State: closed - Opened by jordandekraker 4 months ago
- 1 comment
Labels: enhancement
#297 - macaque atlas
Pull Request -
State: closed - Opened by jordandekraker 4 months ago
- 1 comment
#296 - Alternative simple CLI for hippunfold
Issue -
State: open - Opened by akhanf 4 months ago
Labels: enhancement
#295 - atlas2parc
Issue -
State: open - Opened by jordandekraker 4 months ago
Labels: enhancement, breaking
#294 - anterior-posterior subdivisions option
Issue -
State: open - Opened by akhanf 4 months ago
Labels: enhancement
#293 - Docker untar permissions
Issue -
State: closed - Opened by jordandekraker 4 months ago
- 2 comments
#292 - initial docs for templateseg
Pull Request -
State: closed - Opened by jordandekraker 4 months ago
- 1 comment
#291 - UID Issue on Linux
Issue -
State: closed - Opened by imolax 4 months ago
- 2 comments
#290 - Default Atlas
Issue -
State: open - Opened by yeriguc 5 months ago
- 3 comments
#289 - transform the native hippocapus metrics to the unfolded space
Issue -
State: closed - Opened by raywell627 5 months ago
- 4 comments
#288 - Patch t2w
Pull Request -
State: closed - Opened by jordandekraker 7 months ago
#287 - Segmentation Inaccuracies with degenerated hippocampi
Issue -
State: open - Opened by mchoi99 7 months ago
- 21 comments
#286 - Incomplete hippocampal volumes extraction
Issue -
State: closed - Opened by cyyyuyan 7 months ago
- 1 comment
#285 - Hippunfold errors out at 46%
Issue -
State: closed - Opened by vnbcs 7 months ago
- 3 comments
#284 - Docpatch
Pull Request -
State: closed - Opened by jordandekraker 7 months ago
- 1 comment
#283 - Hippunfold on pediatric data?
Issue -
State: open - Opened by oliver-xie 7 months ago
- 3 comments
#282 - errors while running hippunfold with slurm & snakemake
Issue -
State: closed - Opened by vnbcs 8 months ago
- 4 comments
#281 - Template-based segmentation, and new templates (marmoset, macaque) redo
Pull Request -
State: closed - Opened by akhanf 8 months ago
- 18 comments
Labels: enhancement
#280 - fixes bugs introduced in download-osf PR
Pull Request -
State: closed - Opened by akhanf 8 months ago
Labels: bug
#279 - Docs page for QC
Pull Request -
State: closed - Opened by jordandekraker 8 months ago
#278 - deleted - Template-based segmentation, and new templates (marmoset, macaque)
Pull Request -
State: closed - Opened by akhanf 8 months ago
Labels: enhancement, major
#277 - Download resources from osf
Pull Request -
State: closed - Opened by akhanf 8 months ago
- 4 comments
Labels: maintenance
#276 - Update README.md
Pull Request -
State: closed - Opened by akhanf 8 months ago
#275 - Update requirements.txt in docs
Pull Request -
State: closed - Opened by akhanf 8 months ago
#274 - QC-related question
Issue -
State: closed - Opened by oliver-xie 8 months ago
- 3 comments
#273 - How to know when subjects are fully processed?
Issue -
State: closed - Opened by vnbcs 8 months ago
- 1 comment
#272 - another error on the ds002168 example dataset
Issue -
State: closed - Opened by CogBrainHealthLab 9 months ago
- 2 comments
#271 - logo
Pull Request -
State: closed - Opened by jordandekraker 10 months ago
Labels: documentation
#270 - Add testing for other python versions
Pull Request -
State: closed - Opened by kaitj 11 months ago
- 2 comments
Labels: maintenance
#269 - new branch for cleaner PR
Pull Request -
State: closed - Opened by jordandekraker 11 months ago
- 2 comments
#268 - resources to osf repo
Pull Request -
State: closed - Opened by jordandekraker 11 months ago
- 1 comment
#267 - Sampling functional data for the dentate gyrus
Issue -
State: closed - Opened by vipfa100 12 months ago
- 2 comments
#266 - Error running ds002168 (example) subject: Potentially with symbolic links?
Issue -
State: closed - Opened by jlhanson5 12 months ago
- 15 comments
#265 - Update .readthedocs.yml
Pull Request -
State: closed - Opened by akhanf about 1 year ago
#264 - Marmunfold
Pull Request -
State: closed - Opened by akhanf about 1 year ago
- 19 comments
Labels: wontfix
#263 - adds missing T2w dHCP template to configfile
Pull Request -
State: closed - Opened by akhanf about 1 year ago
Labels: bug
#262 - Change in dependencies
Pull Request -
State: closed - Opened by akhanf about 1 year ago
- 3 comments
Labels: maintenance
#261 - Fix session bug
Pull Request -
State: closed - Opened by akhanf about 1 year ago
Labels: bug
#260 - Latest tag
Pull Request -
State: closed - Opened by akhanf about 1 year ago
Labels: documentation
#259 - Question: QC/unetf3d_dice.tsv
Issue -
State: closed - Opened by andreifoldes about 1 year ago
- 1 comment
#258 - Tutorial for transforming BigBrain to MNI
Issue -
State: closed - Opened by andreifoldes about 1 year ago
- 3 comments
#257 - sample functional data along surface
Issue -
State: closed - Opened by vipfa100 about 1 year ago
- 9 comments
#256 - rename histologyReference2023 to multihist7
Pull Request -
State: closed - Opened by akhanf about 1 year ago
- 2 comments
Labels: enhancement
#255 - fixes bug introduced in unfold_reg by reverting
Pull Request -
State: closed - Opened by akhanf about 1 year ago
Labels: bug
#254 - Naming of histologyReference2023
Issue -
State: closed - Opened by akhanf about 1 year ago
- 3 comments
#253 - label.gii and dlabel.nii files for subfields are corrupt in v1.3.0+
Issue -
State: closed - Opened by akhanf about 1 year ago
Labels: bug
#252 - Update README.md
Pull Request -
State: closed - Opened by akhanf about 1 year ago
Labels: documentation
#251 - replace use of HTTP.remote() with wget
Pull Request -
State: closed - Opened by akhanf about 1 year ago
Labels: bug
#250 - Update README.md
Pull Request -
State: closed - Opened by akhanf about 1 year ago
Labels: documentation
#249 - added neonate_v2 model, minor workflow update for it
Pull Request -
State: closed - Opened by akhanf about 1 year ago
Labels: maintenance
#248 - process HCP fmri on hippunfold results
Issue -
State: closed - Opened by raywell627 about 1 year ago
- 2 comments
#247 - Download models inside workflow
Pull Request -
State: closed - Opened by akhanf about 1 year ago
- 3 comments
Labels: documentation, maintenance
#246 - Update README.md
Pull Request -
State: closed - Opened by akhanf about 1 year ago
Labels: documentation
#245 - zero value vertices on dentate gyrus
Issue -
State: closed - Opened by HusBunia about 1 year ago
- 4 comments
#244 - Synthseg model
Pull Request -
State: closed - Opened by jordandekraker about 1 year ago
- 1 comment
Labels: enhancement
#243 - Synthseg model
Pull Request -
State: closed - Opened by jordandekraker about 1 year ago
- 1 comment
#242 - curvature was producing a few outlier extreme values
Pull Request -
State: closed - Opened by jordandekraker over 1 year ago
Labels: bug
#241 - DG surface contains self-intersection
Issue -
State: closed - Opened by debinz over 1 year ago
- 6 comments
#240 - Warps fix
Pull Request -
State: closed - Opened by jordandekraker over 1 year ago
- 2 comments
Labels: bug
#239 - small bug present when visualizing with freeview
Issue -
State: closed - Opened by akhanf over 1 year ago
- 1 comment
Labels: bug
#238 - quality check git action fix
Pull Request -
State: closed - Opened by jordandekraker over 1 year ago
#237 - Fix quality action
Pull Request -
State: closed - Opened by kaitj over 1 year ago
Labels: bug
#236 - ensure use of Laplace coords follows gm mask
Pull Request -
State: closed - Opened by jordandekraker over 1 year ago
#235 - Maskcontrain
Pull Request -
State: closed - Opened by jordandekraker over 1 year ago
#234 - updates from master branch
Pull Request -
State: closed - Opened by jordandekraker over 1 year ago
#233 - Converting inner/outer surface files to WM and pial format in Freesurfer
Issue -
State: closed - Opened by khazarAhmadi over 1 year ago
- 3 comments
#232 - T1T2w model file/url was missing from the config
Pull Request -
State: closed - Opened by akhanf over 1 year ago
Labels: bug
#231 - Bug in crop native space
Issue -
State: closed - Opened by akhanf over 1 year ago
- 1 comment
#230 - fix bug in crop native box
Pull Request -
State: closed - Opened by akhanf over 1 year ago
- 1 comment
Labels: bug
#229 - Cyclic dependency on rule warp_gii_to_native.
Issue -
State: closed - Opened by debinz over 1 year ago
- 11 comments
#228 - Unfold reg
Pull Request -
State: closed - Opened by jordandekraker over 1 year ago
- 5 comments
Labels: major
#227 - Add accepted in eLife mention and link to readme
Pull Request -
State: closed - Opened by akhanf almost 2 years ago
Labels: documentation
#226 - fix for input type in dseg qc
Pull Request -
State: closed - Opened by jordandekraker almost 2 years ago
Labels: bug
#225 - bugfix for cropref
Pull Request -
State: closed - Opened by jordandekraker almost 2 years ago
Labels: bug
#224 - defined in mm instead of vox
Pull Request -
State: closed - Opened by jordandekraker almost 2 years ago
- 7 comments
Labels: enhancement
#223 - Note on autotop_deps
Pull Request -
State: closed - Opened by jordandekraker almost 2 years ago
Labels: documentation
#222 - Updates for Windows
Pull Request -
State: closed - Opened by jordandekraker almost 2 years ago
Labels: documentation
#221 - Download rule in the workflow
Pull Request -
State: closed - Opened by akhanf almost 2 years ago
- 3 comments
Labels: enhancement
#220 - aligns laplace_coords.py behaviour to laplace_coords_withinit.py
Pull Request -
State: closed - Opened by jordandekraker almost 2 years ago
- 3 comments
Labels: bug
#219 - update docs for running singularity in linux
Pull Request -
State: closed - Opened by akhanf almost 2 years ago
Labels: documentation
#218 - Windows docker instructions
Issue -
State: closed - Opened by jordandekraker almost 2 years ago
- 1 comment