Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / khanlab/hippunfold issues and pull requests

#317 - Jordandekraker patch 1

Pull Request - State: closed - Opened by jordandekraker 2 months ago

#315 - Update Dockerfile to latest version with dependencies

Pull Request - State: closed - Opened by jordandekraker 2 months ago
Labels: bug

#314 - Import patch

Pull Request - State: closed - Opened by jordandekraker 2 months ago
Labels: bug

#313 - fix dependency versions for snakebids, pulp

Pull Request - State: closed - Opened by jordandekraker 2 months ago
Labels: bug

#312 - broken workflow, possibly in dependencies

Issue - State: closed - Opened by jordandekraker 2 months ago - 5 comments

#311 - wetrun testing

Issue - State: open - Opened by jordandekraker 3 months ago

#310 - Template inject Lflip vs R

Pull Request - State: closed - Opened by jordandekraker 3 months ago - 1 comment

#309 - bigbrain template laplace coords added

Pull Request - State: closed - Opened by jordandekraker 3 months ago

#308 - Temporry files writen to home directory

Issue - State: open - Opened by JosePMarques 3 months ago - 5 comments

#307 - patch-templateseg-dHCP

Pull Request - State: closed - Opened by jordandekraker 3 months ago - 2 comments

#306 - use naturalneighbour interpolation instead of linear barycentric

Pull Request - State: closed - Opened by jordandekraker 3 months ago - 4 comments
Labels: breaking

#305 - Naturalinterpolation

Pull Request - State: closed - Opened by jordandekraker 3 months ago - 1 comment
Labels: breaking

#304 - added coords for templateseg workflow

Pull Request - State: closed - Opened by jordandekraker 3 months ago

#303 - Wet-run test data

Pull Request - State: closed - Opened by jordandekraker 3 months ago

#302 - AD branch

Pull Request - State: closed - Opened by Bradley-Karat 4 months ago

#300 - vertex cleaning, especially for DG

Pull Request - State: closed - Opened by jordandekraker 4 months ago - 3 comments
Labels: breaking

#299 - ABAv3 mouse atlas+template

Pull Request - State: closed - Opened by jordandekraker 4 months ago

#298 - expanded DG

Issue - State: closed - Opened by jordandekraker 4 months ago - 1 comment
Labels: enhancement

#297 - macaque atlas

Pull Request - State: closed - Opened by jordandekraker 4 months ago - 1 comment

#296 - Alternative simple CLI for hippunfold

Issue - State: open - Opened by akhanf 4 months ago
Labels: enhancement

#295 - atlas2parc

Issue - State: open - Opened by jordandekraker 4 months ago
Labels: enhancement, breaking

#294 - anterior-posterior subdivisions option

Issue - State: open - Opened by akhanf 4 months ago
Labels: enhancement

#293 - Docker untar permissions

Issue - State: closed - Opened by jordandekraker 4 months ago - 2 comments

#292 - initial docs for templateseg

Pull Request - State: closed - Opened by jordandekraker 4 months ago - 1 comment

#291 - UID Issue on Linux

Issue - State: closed - Opened by imolax 4 months ago - 2 comments

#290 - Default Atlas

Issue - State: open - Opened by yeriguc 5 months ago - 3 comments

#289 - transform the native hippocapus metrics to the unfolded space

Issue - State: closed - Opened by raywell627 5 months ago - 4 comments

#288 - Patch t2w

Pull Request - State: closed - Opened by jordandekraker 7 months ago

#287 - Segmentation Inaccuracies with degenerated hippocampi

Issue - State: open - Opened by mchoi99 7 months ago - 21 comments

#286 - Incomplete hippocampal volumes extraction

Issue - State: closed - Opened by cyyyuyan 7 months ago - 1 comment

#285 - Hippunfold errors out at 46%

Issue - State: closed - Opened by vnbcs 7 months ago - 3 comments

#284 - Docpatch

Pull Request - State: closed - Opened by jordandekraker 7 months ago - 1 comment

#283 - Hippunfold on pediatric data?

Issue - State: open - Opened by oliver-xie 7 months ago - 3 comments

#282 - errors while running hippunfold with slurm & snakemake

Issue - State: closed - Opened by vnbcs 8 months ago - 4 comments

#281 - Template-based segmentation, and new templates (marmoset, macaque) redo

Pull Request - State: closed - Opened by akhanf 8 months ago - 18 comments
Labels: enhancement

#280 - fixes bugs introduced in download-osf PR

Pull Request - State: closed - Opened by akhanf 8 months ago
Labels: bug

#279 - Docs page for QC

Pull Request - State: closed - Opened by jordandekraker 8 months ago

#278 - deleted - Template-based segmentation, and new templates (marmoset, macaque)

Pull Request - State: closed - Opened by akhanf 8 months ago
Labels: enhancement, major

#277 - Download resources from osf

Pull Request - State: closed - Opened by akhanf 8 months ago - 4 comments
Labels: maintenance

#276 - Update README.md

Pull Request - State: closed - Opened by akhanf 8 months ago

#275 - Update requirements.txt in docs

Pull Request - State: closed - Opened by akhanf 8 months ago

#274 - QC-related question

Issue - State: closed - Opened by oliver-xie 8 months ago - 3 comments

#273 - How to know when subjects are fully processed?

Issue - State: closed - Opened by vnbcs 8 months ago - 1 comment

#272 - another error on the ds002168 example dataset

Issue - State: closed - Opened by CogBrainHealthLab 9 months ago - 2 comments

#271 - logo

Pull Request - State: closed - Opened by jordandekraker 10 months ago
Labels: documentation

#270 - Add testing for other python versions

Pull Request - State: closed - Opened by kaitj 11 months ago - 2 comments
Labels: maintenance

#269 - new branch for cleaner PR

Pull Request - State: closed - Opened by jordandekraker 11 months ago - 2 comments

#268 - resources to osf repo

Pull Request - State: closed - Opened by jordandekraker 11 months ago - 1 comment

#267 - Sampling functional data for the dentate gyrus

Issue - State: closed - Opened by vipfa100 12 months ago - 2 comments

#266 - Error running ds002168 (example) subject: Potentially with symbolic links?

Issue - State: closed - Opened by jlhanson5 12 months ago - 15 comments

#265 - Update .readthedocs.yml

Pull Request - State: closed - Opened by akhanf about 1 year ago

#264 - Marmunfold

Pull Request - State: closed - Opened by akhanf about 1 year ago - 19 comments
Labels: wontfix

#263 - adds missing T2w dHCP template to configfile

Pull Request - State: closed - Opened by akhanf about 1 year ago
Labels: bug

#262 - Change in dependencies

Pull Request - State: closed - Opened by akhanf about 1 year ago - 3 comments
Labels: maintenance

#261 - Fix session bug

Pull Request - State: closed - Opened by akhanf about 1 year ago
Labels: bug

#260 - Latest tag

Pull Request - State: closed - Opened by akhanf about 1 year ago
Labels: documentation

#259 - Question: QC/unetf3d_dice.tsv

Issue - State: closed - Opened by andreifoldes about 1 year ago - 1 comment

#258 - Tutorial for transforming BigBrain to MNI

Issue - State: closed - Opened by andreifoldes about 1 year ago - 3 comments

#257 - sample functional data along surface

Issue - State: closed - Opened by vipfa100 about 1 year ago - 9 comments

#256 - rename histologyReference2023 to multihist7

Pull Request - State: closed - Opened by akhanf about 1 year ago - 2 comments
Labels: enhancement

#255 - fixes bug introduced in unfold_reg by reverting

Pull Request - State: closed - Opened by akhanf about 1 year ago
Labels: bug

#254 - Naming of histologyReference2023

Issue - State: closed - Opened by akhanf about 1 year ago - 3 comments

#253 - label.gii and dlabel.nii files for subfields are corrupt in v1.3.0+

Issue - State: closed - Opened by akhanf about 1 year ago
Labels: bug

#252 - Update README.md

Pull Request - State: closed - Opened by akhanf about 1 year ago
Labels: documentation

#251 - replace use of HTTP.remote() with wget

Pull Request - State: closed - Opened by akhanf about 1 year ago
Labels: bug

#250 - Update README.md

Pull Request - State: closed - Opened by akhanf about 1 year ago
Labels: documentation

#249 - added neonate_v2 model, minor workflow update for it

Pull Request - State: closed - Opened by akhanf about 1 year ago
Labels: maintenance

#248 - process HCP fmri on hippunfold results

Issue - State: closed - Opened by raywell627 about 1 year ago - 2 comments

#247 - Download models inside workflow

Pull Request - State: closed - Opened by akhanf about 1 year ago - 3 comments
Labels: documentation, maintenance

#246 - Update README.md

Pull Request - State: closed - Opened by akhanf about 1 year ago
Labels: documentation

#245 - zero value vertices on dentate gyrus

Issue - State: closed - Opened by HusBunia about 1 year ago - 4 comments

#244 - Synthseg model

Pull Request - State: closed - Opened by jordandekraker about 1 year ago - 1 comment
Labels: enhancement

#243 - Synthseg model

Pull Request - State: closed - Opened by jordandekraker about 1 year ago - 1 comment

#242 - curvature was producing a few outlier extreme values

Pull Request - State: closed - Opened by jordandekraker over 1 year ago
Labels: bug

#241 - DG surface contains self-intersection

Issue - State: closed - Opened by debinz over 1 year ago - 6 comments

#240 - Warps fix

Pull Request - State: closed - Opened by jordandekraker over 1 year ago - 2 comments
Labels: bug

#239 - small bug present when visualizing with freeview

Issue - State: closed - Opened by akhanf over 1 year ago - 1 comment
Labels: bug

#238 - quality check git action fix

Pull Request - State: closed - Opened by jordandekraker over 1 year ago

#237 - Fix quality action

Pull Request - State: closed - Opened by kaitj over 1 year ago
Labels: bug

#236 - ensure use of Laplace coords follows gm mask

Pull Request - State: closed - Opened by jordandekraker over 1 year ago

#235 - Maskcontrain

Pull Request - State: closed - Opened by jordandekraker over 1 year ago

#234 - updates from master branch

Pull Request - State: closed - Opened by jordandekraker over 1 year ago

#233 - Converting inner/outer surface files to WM and pial format in Freesurfer

Issue - State: closed - Opened by khazarAhmadi over 1 year ago - 3 comments

#232 - T1T2w model file/url was missing from the config

Pull Request - State: closed - Opened by akhanf over 1 year ago
Labels: bug

#231 - Bug in crop native space

Issue - State: closed - Opened by akhanf over 1 year ago - 1 comment

#230 - fix bug in crop native box

Pull Request - State: closed - Opened by akhanf over 1 year ago - 1 comment
Labels: bug

#229 - Cyclic dependency on rule warp_gii_to_native.

Issue - State: closed - Opened by debinz over 1 year ago - 11 comments

#228 - Unfold reg

Pull Request - State: closed - Opened by jordandekraker over 1 year ago - 5 comments
Labels: major

#227 - Add accepted in eLife mention and link to readme

Pull Request - State: closed - Opened by akhanf almost 2 years ago
Labels: documentation

#226 - fix for input type in dseg qc

Pull Request - State: closed - Opened by jordandekraker almost 2 years ago
Labels: bug

#225 - bugfix for cropref

Pull Request - State: closed - Opened by jordandekraker almost 2 years ago
Labels: bug

#224 - defined in mm instead of vox

Pull Request - State: closed - Opened by jordandekraker almost 2 years ago - 7 comments
Labels: enhancement

#223 - Note on autotop_deps

Pull Request - State: closed - Opened by jordandekraker almost 2 years ago
Labels: documentation

#222 - Updates for Windows

Pull Request - State: closed - Opened by jordandekraker almost 2 years ago
Labels: documentation

#221 - Download rule in the workflow

Pull Request - State: closed - Opened by akhanf almost 2 years ago - 3 comments
Labels: enhancement

#220 - aligns laplace_coords.py behaviour to laplace_coords_withinit.py

Pull Request - State: closed - Opened by jordandekraker almost 2 years ago - 3 comments
Labels: bug

#219 - update docs for running singularity in linux

Pull Request - State: closed - Opened by akhanf almost 2 years ago
Labels: documentation

#218 - Windows docker instructions

Issue - State: closed - Opened by jordandekraker almost 2 years ago - 1 comment