Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / khanlab/hippunfold issues and pull requests

#371 - Refactor laplace-beltrami

Pull Request - State: closed - Opened by akhanf 4 days ago - 2 comments

#370 - Use templateflow for hippocampus surface templates

Issue - State: open - Opened by akhanf 5 days ago
Labels: v2.0

#369 - surface smoothing

Issue - State: open - Opened by akhanf 5 days ago
Labels: v2.0

#368 - dev dependencies with conda

Issue - State: open - Opened by akhanf 5 days ago - 13 comments
Labels: v2.0

#367 - WIP - Containerize conda

Pull Request - State: open - Opened by Dhananjhay 6 days ago

#366 - containerized conda deployment with --containerize

Issue - State: open - Opened by akhanf 6 days ago - 5 comments
Labels: v2.0

#365 - New participant_create_template analysis_level

Pull Request - State: open - Opened by akhanf 7 days ago - 5 comments

#364 - add decimation and clean_method params for gen_isosurface

Pull Request - State: closed - Opened by akhanf 8 days ago - 10 comments

#363 - remove renzo

Pull Request - State: closed - Opened by akhanf 8 days ago

#362 - Updated templates, and surface-templates

Issue - State: open - Opened by akhanf 9 days ago
Labels: v2.0

#361 - Computational efficiency for surface operations

Issue - State: open - Opened by akhanf 9 days ago - 1 comment
Labels: v2.0

#360 - Upgrade snakebids to latest version

Pull Request - State: closed - Opened by Dhananjhay 13 days ago - 3 comments

#359 - refactoring surface and coords generation

Pull Request - State: closed - Opened by jordandekraker 15 days ago - 13 comments

#358 - "stingray" unfoldreg details

Issue - State: open - Opened by jordandekraker 16 days ago - 2 comments
Labels: v2.0

#357 - DG surface clean

Pull Request - State: closed - Opened by jordandekraker 20 days ago - 16 comments

#356 - Untar model

Pull Request - State: open - Opened by akhanf 21 days ago

#355 - bugfix for hippb500 workflow

Pull Request - State: closed - Opened by akhanf 22 days ago

#354 - script reusability outside snakemake

Issue - State: open - Opened by jordandekraker 23 days ago - 1 comment

#353 - Speeed

Pull Request - State: closed - Opened by jordandekraker 23 days ago - 10 comments

#352 - prep_segs_for_greedy error on Mac

Issue - State: closed - Opened by EmilySNichols 23 days ago - 4 comments

#351 - Use conda integrated package management feature within snakemake

Pull Request - State: closed - Opened by Dhananjhay 23 days ago - 12 comments
Labels: enhancement, v2.0

#350 - Workdir now set to `work` by default

Pull Request - State: closed - Opened by akhanf 27 days ago

#349 - WIP - Laynii native

Pull Request - State: closed - Opened by akhanf 30 days ago - 1 comment

#348 - untar model once

Issue - State: closed - Opened by jordandekraker about 1 month ago - 3 comments

#347 - Add support for new workbench structure labels

Pull Request - State: closed - Opened by akhanf about 1 month ago - 1 comment

#346 - manualseg resampling in-place without transformation

Pull Request - State: closed - Opened by akhanf about 1 month ago - 7 comments

#345 - Native surfaces and unfolded registration refactoring

Pull Request - State: closed - Opened by akhanf about 1 month ago

#343 - About hippunfold used by docker in Linux

Issue - State: closed - Opened by rzxxzxy about 1 month ago - 1 comment

#342 - Laplace-Beltrami on surfaces

Pull Request - State: closed - Opened by jordandekraker about 1 month ago - 2 comments

#341 - how to use hippunfold with CBRAIN Web-based Platform

Issue - State: open - Opened by rzxxzxy about 1 month ago - 5 comments

#340 - Atlas and template resources

Issue - State: open - Opened by akhanf about 2 months ago
Labels: v2.0

#339 - Warps patch

Pull Request - State: closed - Opened by jordandekraker about 2 months ago

#338 - Behaviour and location of workdir, and removing hippunfold/ toplevel folder

Pull Request - State: closed - Opened by akhanf about 2 months ago

#337 - Restructure config file to reduce number of top-level keys

Issue - State: open - Opened by akhanf about 2 months ago
Labels: v2.0

#336 - Integrate unfolded_reg with native_surf

Issue - State: open - Opened by akhanf about 2 months ago
Labels: v2.0

#335 - Simple lflip

Pull Request - State: closed - Opened by jordandekraker about 2 months ago - 4 comments

#334 - dentate full surface workflow

Issue - State: open - Opened by jordandekraker about 2 months ago - 1 comment
Labels: v2.0

#333 - BB template & vertex outliers

Pull Request - State: closed - Opened by jordandekraker about 2 months ago - 1 comment

#332 - Conda dependencies

Pull Request - State: closed - Opened by Dhananjhay about 2 months ago - 3 comments

#331 - bug fixes to branch

Pull Request - State: closed - Opened by jordandekraker about 2 months ago

#330 - Merge in new changes to AntPost branch

Pull Request - State: closed - Opened by Bradley-Karat about 2 months ago

#329 - Port v1.5.2 bugfixes into dev-v2.0.0

Pull Request - State: closed - Opened by akhanf 2 months ago

#328 - BB templateseg & outlier vertices

Pull Request - State: closed - Opened by jordandekraker 2 months ago - 7 comments

#327 - Nativesurf

Pull Request - State: closed - Opened by akhanf 2 months ago - 3 comments

#326 - Ali fixes to dev branch

Pull Request - State: closed - Opened by jordandekraker 2 months ago - 5 comments

#325 - simplified use of manual segmetation

Pull Request - State: closed - Opened by jordandekraker 2 months ago - 2 comments

#324 - retire hemi-Lflip

Issue - State: closed - Opened by jordandekraker 2 months ago - 2 comments
Labels: v2.0

#323 - Change how temporary files are dealt with

Issue - State: closed - Opened by akhanf 2 months ago - 1 comment
Labels: v2.0

#322 - Ensure some provenance is written for a hippunfold run

Issue - State: open - Opened by akhanf 2 months ago
Labels: v2.0

#321 - FIX: hipp curvature was being used always, instead of wildcard

Pull Request - State: closed - Opened by akhanf 2 months ago
Labels: bug

#320 - FIX: input images when using T1T2w model

Pull Request - State: closed - Opened by akhanf 2 months ago
Labels: bug

#319 - neonate modality

Issue - State: open - Opened by jordandekraker 3 months ago
Labels: v2.0

#318 - Update snakebids to its latest version (v0.13.1)

Pull Request - State: closed - Opened by Dhananjhay 4 months ago - 6 comments
Labels: v2.0

#317 - Jordandekraker patch 1

Pull Request - State: closed - Opened by jordandekraker 7 months ago

#315 - Update Dockerfile to latest version with dependencies

Pull Request - State: closed - Opened by jordandekraker 7 months ago
Labels: bug

#314 - Import patch

Pull Request - State: closed - Opened by jordandekraker 7 months ago
Labels: bug

#313 - fix dependency versions for snakebids, pulp

Pull Request - State: closed - Opened by jordandekraker 7 months ago
Labels: bug

#312 - broken workflow, possibly in dependencies

Issue - State: closed - Opened by jordandekraker 7 months ago - 5 comments

#311 - wetrun testing

Issue - State: open - Opened by jordandekraker 7 months ago - 2 comments
Labels: v2.0

#310 - Template inject Lflip vs R

Pull Request - State: closed - Opened by jordandekraker 7 months ago - 1 comment

#309 - bigbrain template laplace coords added

Pull Request - State: closed - Opened by jordandekraker 7 months ago

#308 - Temporry files writen to home directory

Issue - State: closed - Opened by JosePMarques 8 months ago - 5 comments

#307 - patch-templateseg-dHCP

Pull Request - State: closed - Opened by jordandekraker 8 months ago - 2 comments

#306 - use naturalneighbour interpolation instead of linear barycentric

Pull Request - State: closed - Opened by jordandekraker 8 months ago - 4 comments
Labels: breaking

#305 - Naturalinterpolation

Pull Request - State: closed - Opened by jordandekraker 8 months ago - 1 comment
Labels: breaking

#304 - added coords for templateseg workflow

Pull Request - State: closed - Opened by jordandekraker 8 months ago

#303 - Wet-run test data

Pull Request - State: closed - Opened by jordandekraker 8 months ago

#302 - AD branch

Pull Request - State: closed - Opened by Bradley-Karat 8 months ago

#300 - vertex cleaning, especially for DG

Pull Request - State: closed - Opened by jordandekraker 8 months ago - 3 comments
Labels: breaking

#299 - ABAv3 mouse atlas+template

Pull Request - State: closed - Opened by jordandekraker 8 months ago

#298 - expanded DG

Issue - State: closed - Opened by jordandekraker 8 months ago - 1 comment
Labels: enhancement

#297 - macaque atlas

Pull Request - State: closed - Opened by jordandekraker 8 months ago - 1 comment

#296 - Alternative simple CLI for hippunfold

Issue - State: open - Opened by akhanf 8 months ago - 2 comments
Labels: enhancement, v2.0

#295 - atlas2parc

Issue - State: open - Opened by jordandekraker 8 months ago - 1 comment
Labels: enhancement, breaking

#294 - anterior-posterior subdivisions option

Issue - State: open - Opened by akhanf 8 months ago - 2 comments
Labels: enhancement

#293 - Docker untar permissions

Issue - State: closed - Opened by jordandekraker 8 months ago - 2 comments

#292 - initial docs for templateseg

Pull Request - State: closed - Opened by jordandekraker 9 months ago - 1 comment

#291 - UID Issue on Linux

Issue - State: closed - Opened by imolax 9 months ago - 2 comments

#290 - Default Atlas

Issue - State: closed - Opened by yeriguc 10 months ago - 4 comments

#289 - transform the native hippocapus metrics to the unfolded space

Issue - State: closed - Opened by raywell627 10 months ago - 4 comments

#288 - Patch t2w

Pull Request - State: closed - Opened by jordandekraker 11 months ago

#287 - Segmentation Inaccuracies with degenerated hippocampi

Issue - State: open - Opened by mchoi99 11 months ago - 21 comments

#286 - Incomplete hippocampal volumes extraction

Issue - State: closed - Opened by cyyyuyan 11 months ago - 1 comment

#285 - Hippunfold errors out at 46%

Issue - State: closed - Opened by vnbcs 11 months ago - 3 comments

#284 - Docpatch

Pull Request - State: closed - Opened by jordandekraker 11 months ago - 1 comment

#283 - Hippunfold on pediatric data?

Issue - State: closed - Opened by oliver-xie 11 months ago - 3 comments

#282 - errors while running hippunfold with slurm & snakemake

Issue - State: closed - Opened by vnbcs 12 months ago - 4 comments

#281 - Template-based segmentation, and new templates (marmoset, macaque) redo

Pull Request - State: closed - Opened by akhanf 12 months ago - 18 comments
Labels: enhancement

#280 - fixes bugs introduced in download-osf PR

Pull Request - State: closed - Opened by akhanf 12 months ago
Labels: bug

#279 - Docs page for QC

Pull Request - State: closed - Opened by jordandekraker 12 months ago

#278 - deleted - Template-based segmentation, and new templates (marmoset, macaque)

Pull Request - State: closed - Opened by akhanf 12 months ago
Labels: enhancement, major

#277 - Download resources from osf

Pull Request - State: closed - Opened by akhanf 12 months ago - 4 comments
Labels: maintenance

#276 - Update README.md

Pull Request - State: closed - Opened by akhanf about 1 year ago

#275 - Update requirements.txt in docs

Pull Request - State: closed - Opened by akhanf about 1 year ago

#274 - QC-related question

Issue - State: closed - Opened by oliver-xie about 1 year ago - 3 comments