Ecosyste.ms: Issues

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GitHub / kevinrue/hancock issues and pull requests

#56 - status check

Issue - State: open - Opened by vjcitn about 2 years ago - 2 comments

#55 - Action

Pull Request - State: closed - Opened by kevinrue over 4 years ago

#54 - crop NULL to avoid magick issue

Pull Request - State: closed - Opened by kevinrue almost 5 years ago

#53 - fix following scater update

Pull Request - State: closed - Opened by kevinrue about 5 years ago

#52 - updated BiocGenerics removes the need to coerce to Matrix

Pull Request - State: closed - Opened by kevinrue over 5 years ago

#51 - rename elementData and setData to *Info following unisets update

Pull Request - State: closed - Opened by kevinrue over 5 years ago

#50 - rename BaseSets to Sets following unisets update

Pull Request - State: closed - Opened by kevinrue over 5 years ago

#49 - do not use method= argument in runPCA()

Pull Request - State: closed - Opened by kevinrue over 5 years ago

#48 - limit support to one gene set package for now

Pull Request - State: closed - Opened by kevinrue over 5 years ago

#47 - Fixes to upgrade to beachmat version 2

Pull Request - State: closed - Opened by LTLA over 5 years ago

#46 - Speed up Travis

Pull Request - State: closed - Opened by kevinrue over 5 years ago

#45 - Swap vignette for PBMC3k

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#44 - Set R version requirement

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#43 - show as data.frame, not Hits

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#42 - Match unisets update: no more elementIds and setIds

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#41 - relative link

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#40 - Method "PositiveProportionDifference" should order relations by decreasing markerProportion

Issue - State: closed - Opened by kevinrue almost 6 years ago - 1 comment
Labels: invalid

#39 - Fixes

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#38 - Pkgdown

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#37 - use unisets as core data structure

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#36 - rename sticker image files

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#35 - Minor updates to vignettes.

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#34 - Rename package and minor cleanup

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#33 - Added C++ code to create marker signature scree plot.

Pull Request - State: closed - Opened by LTLA almost 6 years ago

#32 - Use iSEE's collapsible boxes

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#31 - brief tour of the shiny app

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#30 - Draft package vignette

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#29 - offer x and x axis control for redDim plot

Pull Request - State: closed - Opened by kevinrue almost 6 years ago - 1 comment

#28 - new reddim shiny plot

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#27 - Shinyplus

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#26 - Shiny

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#25 - preserve dimension of matrices before rowSum

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#24 - Doc and learning metadata

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#23 - Multiple methods to compare the detection rate between target cluster…

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#23 - Multiple methods to compare the detection rate between target cluster…

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#22 - Document and more flexible learning method

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#21 - bugfix

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#20 - Example learning method

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#19 - simplified and sped up marker detection matrix

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#18 - Extended support for the Kayla-Morrell/GeneSet package;

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#17 - fix links between anchors in vignette

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#16 - demonstrate GeneSet package in concept vignette

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#15 - Typo

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#14 - polish colored gene set example

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#13 - Add section title for bibliography.

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#12 - Extend concept vignette to discuss negative markers

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#11 - small edits to concept vignette

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#10 - add first plotting function;

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#9 - Added first Predict method

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#8 - More thoughts

Pull Request - State: closed - Opened by kevinrue almost 6 years ago

#7 - Document conversion of list to GeneSetCollection

Pull Request - State: closed - Opened by kevinrue about 6 years ago

#6 - Simply vignette and remove superfluous method

Pull Request - State: closed - Opened by kevinrue about 6 years ago

#5 - flesh out the definition of markers and signatures

Pull Request - State: closed - Opened by kevinrue about 6 years ago

#4 - modified hexstickers to new version and references

Pull Request - State: closed - Opened by robertamezquita about 6 years ago

#3 - Return, logo, readme

Pull Request - State: closed - Opened by kevinrue about 6 years ago

#2 - update badge URL; complete vignette section

Pull Request - State: closed - Opened by kevinrue about 6 years ago - 1 comment

#1 - Detection of markers in individual cells

Pull Request - State: closed - Opened by kevinrue about 6 years ago - 1 comment