kevinblighe/EnhancedVolcano issues and pull requests

#100 - background label

Issue - State: closed - Opened by lmanchon over 2 years ago - 6 comments

#99 - Trouble installing EnhancedVolcano

Issue - State: closed - Opened by indraroy over 2 years ago - 1 comment

#98 - count the number of DEGs

Issue - State: closed - Opened by me37uday over 2 years ago - 1 comment

#97 - Legends for pointSize and colCustom

Issue - State: closed - Opened by nitishkumarmishra over 2 years ago - 1 comment

#96 - citationURL: Remove typo from citation link

Issue - State: closed - Opened by KasperThystrup over 2 years ago - 3 comments

#95 - labeling points with significant p-values

Issue - State: closed - Opened by AidenSb over 2 years ago - 1 comment

#94 - How to point the overlapping genes in enhanced volcano plot?

Issue - State: closed - Opened by mathavanpu over 2 years ago - 1 comment

#93 - Labels not working

Issue - State: closed - Opened by margotcj almost 3 years ago - 2 comments

#92 - Enhanced Volcano plot not loading in my library

Issue - State: closed - Opened by EmCutlerUCL almost 3 years ago - 2 comments

#91 - Generate plot without any title - change of title/legend font size

Issue - State: closed - Opened by JuHey almost 3 years ago - 2 comments

#90 - Volcano plot without any labels

Issue - State: closed - Opened by DM087 almost 3 years ago - 3 comments

#89 - labs displayed as numbers instead of gene ID

Issue - State: closed - Opened by rcnava almost 3 years ago - 1 comment

#88 - Not able to install EnhancedVolcano? Not able to install proj4

Issue - State: closed - Opened by mathavan10 almost 3 years ago - 3 comments

#87 - maplot and volcano same image

Issue - State: closed - Opened by Maarten-vd-Sande almost 3 years ago - 5 comments

#86 - Option for custom colAlpha or overlaying points in a certain order

Issue - State: closed - Opened by kimsjune almost 3 years ago - 1 comment

#85 - Unable to install

Issue - State: closed - Opened by me37uday about 3 years ago

#84 - How to use enhancedVolcano for proteomics data

Issue - State: closed - Opened by w2niva about 3 years ago - 1 comment

#83 - duplicate rownames error

Issue - State: closed - Opened by Anto007 about 3 years ago - 2 comments

#82 - Highlighting key variables via custom point sizes - legend?

Issue - State: closed - Opened by Cajun-data about 3 years ago - 2 comments

#81 - Raster option not recognized

Issue - State: closed - Opened by cschmidl about 3 years ago - 2 comments

#80 - Adjusted P-Value Cut Off Problem

Issue - State: closed - Opened by eseffar over 3 years ago - 7 comments

#79 - Error when overrided shape scheme with custom key-value pairs + Problem of overriding color of data points

Issue - State: closed - Opened by chainorato over 3 years ago - 1 comment

#78 - Removed dependencies on ggalt & ggrastr packages

Pull Request - State: closed - Opened by ericblanc20 over 3 years ago - 4 comments

#77 - any possibility of converting existing enhancedvolcano to an interactive one?

Issue - State: closed - Opened by klai001 over 3 years ago - 2 comments

#76 - Color and label only genes of interest

Issue - State: closed - Opened by aditisk over 3 years ago - 2 comments

#75 - Custom pval col

Pull Request - State: closed - Opened by andreagrioni over 3 years ago - 3 comments

#74 - Y - axis control to manage height of plot

Issue - State: closed - Opened by sid5427 over 3 years ago - 2 comments

#73 - Noise around the midline

Issue - State: closed - Opened by soren-rand over 3 years ago - 5 comments

#72 - arrowheads option doesn't work

Issue - State: closed - Opened by lokapal over 3 years ago - 1 comment

#71 - Position of labels

Issue - State: closed - Opened by BaluPai over 3 years ago - 7 comments
Labels: enhancement

#70 - controlling label repel within EnhancedVolcano

Issue - State: closed - Opened by davidbmorse over 3 years ago - 3 comments

#69 - How to change the gene labels to Italic

Issue - State: closed - Opened by ccruizm over 3 years ago - 3 comments

#68 - Weird enhanced volcano plot after performing LFCshrinage

Issue - State: closed - Opened by cannico30 almost 4 years ago - 2 comments

#67 - Set ylim and plot greater values on the limit along x-axis.

Issue - State: closed - Opened by elcega almost 4 years ago - 1 comment

#66 - Add

Issue - State: closed - Opened by elcega almost 4 years ago - 2 comments

#65 - Citation for EnhancedVolcano?

Issue - State: closed - Opened by ayushnoori almost 4 years ago - 2 comments

#64 - Getting an error when installing EnhancedVolano pkg

Issue - State: closed - Opened by venuraherath almost 4 years ago - 1 comment

#63 - Volcano plot it's produced but wihout any labels

Issue - State: closed - Opened by matrs almost 4 years ago - 1 comment

#62 - beginners question

Issue - State: closed - Opened by mocherry almost 4 years ago - 1 comment

#61 - Issue exporting EnhancedVolcano with ggsave

Issue - State: closed - Opened by EidrianGM almost 4 years ago - 1 comment

#60 - Issue with 'selectLab'

Issue - State: closed - Opened by nbbarrientos almost 4 years ago - 2 comments

#59 - the id transversion maybe not ftit for all counts matrix

Issue - State: closed - Opened by dj10086 about 4 years ago - 5 comments

#58 - Both left and right of zero as positive x-axis values

Issue - State: closed - Opened by CodeInTheSkies about 4 years ago - 5 comments

#57 - Change toptable$Sig to Sig to avoid ggplot warning

Pull Request - State: closed - Opened by eturkes about 4 years ago - 1 comment

#56 - A way to change font family axis

Issue - State: closed - Opened by lmanchon about 4 years ago - 1 comment

#55 - Alignment of Y-axis labels with tick marks

Pull Request - State: closed - Opened by benostendorf about 4 years ago

#54 - Add option to rasterize geom_point layer

Pull Request - State: closed - Opened by benostendorf about 4 years ago

#53 - Option for rasterization

Issue - State: closed - Opened by benostendorf about 4 years ago - 2 comments

#52 - Warning messages: 1: In FUN(X[[i]], ...) : NaNs produced

Issue - State: closed - Opened by archana433 about 4 years ago - 2 comments

#51 - Using another continuous value (not logFC or p) to scale point size/gradient colour points

Issue - State: closed - Opened by laylagerami about 4 years ago - 1 comment

#50 - Question - How is the number of labels plotted decided?

Issue - State: closed - Opened by northNomad about 4 years ago - 1 comment

#49 - Can natural log (not Log2FC) also be used equally well?

Issue - State: closed - Opened by CodeInTheSkies about 4 years ago - 1 comment

#48 - Add option for dropping unused factors from legend

Pull Request - State: closed - Opened by eturkes about 4 years ago - 3 comments

#47 - Omit arrow (drawConnectors)

Issue - State: closed - Opened by kunstner over 4 years ago - 3 comments

#46 - advice on LFC cutoff

Issue - State: closed - Opened by klai001 over 4 years ago - 2 comments

#45 - Issue when trying to shade a key variable

Issue - State: closed - Opened by AnthonyDohertyTCD over 4 years ago - 9 comments
Labels: enhancement

#44 - p-value or adjusted-p-value

Issue - State: closed - Opened by Homap over 4 years ago - 3 comments

#43 - dealing with zero pvalue

Issue - State: closed - Opened by MichaelPeibo over 4 years ago - 3 comments

#42 - Rowname questions

Issue - State: closed - Opened by satellite119 over 4 years ago - 2 comments

#41 - incorrect p-val cutoff line render

Issue - State: closed - Opened by AminMahpour over 4 years ago - 2 comments

#40 - error with ggplotly

Issue - State: closed - Opened by ghost over 4 years ago - 3 comments

#39 - FC cut off issue

Issue - State: closed - Opened by JKB92 over 4 years ago

#38 - About Legend

Issue - State: closed - Opened by JJSGouveia over 4 years ago - 1 comment

#37 - pointSize unused argument

Issue - State: closed - Opened by eoinmck over 4 years ago - 2 comments

#36 - Adding label to the cutoff vline

Issue - State: closed - Opened by Aanchal85 over 4 years ago - 2 comments

#35 - Add gradient color based on padj

Issue - State: closed - Opened by DinoFer over 4 years ago - 12 comments

#34 - Legend Labels not changing

Issue - State: closed - Opened by athulmenon over 4 years ago - 1 comment

#33 - y-axis

Issue - State: closed - Opened by paytonyau over 4 years ago - 1 comment

#32 - error message when using multiple shapes

Issue - State: closed - Opened by yeroslaviz over 4 years ago - 5 comments

#31 - How to add break y-axis?

Issue - State: closed - Opened by bk11-lab almost 5 years ago - 4 comments

#30 - Deprecated pointSize, labSize args in vignette?

Issue - State: closed - Opened by cgpu almost 5 years ago - 5 comments

#29 - Gene label plotting

Issue - State: closed - Opened by Deusu almost 5 years ago - 3 comments

#28 - [request]drawConnectors alway on or pinpoint dots

Issue - State: closed - Opened by sunta3iouxos almost 5 years ago - 2 comments

#27 - Numbers of Y-axis padj value

Issue - State: closed - Opened by Brandaoaf almost 5 years ago - 3 comments

#26 - How to plot the selectLab which overlapping with the double postive for logFC and P ?

Issue - State: closed - Opened by liuyongcds almost 5 years ago - 2 comments

#25 - Cannot install "kevinblighe/EnhancedVolcano"

Issue - State: closed - Opened by jahneldardavik almost 5 years ago - 6 comments

#24 - shape, colCustom and drawConnector arguments don't work

Issue - State: closed - Opened by EmilieGllch about 5 years ago - 4 comments

#23 - Hiding custom color legend

Issue - State: closed - Opened by bmplaw about 5 years ago - 4 comments

#22 - Add support for tibbles

Issue - State: closed - Opened by dkulp2 about 5 years ago - 1 comment

#21 - [bug?]class double problem

Issue - State: closed - Opened by dodoflyy about 5 years ago - 3 comments

#20 - unused argument (colCustom = keyvals)

Issue - State: closed - Opened by marctormo about 5 years ago - 1 comment

#19 - Title

Issue - State: closed - Opened by fazeliniah over 5 years ago - 1 comment

#18 - Feature request: custom point size

Issue - State: closed - Opened by proteostasis over 5 years ago - 3 comments

#17 - Feature request: options to have thresholds values

Issue - State: closed - Opened by lokapal over 5 years ago - 2 comments

#16 - No Labels

Issue - State: closed - Opened by lurens over 5 years ago - 2 comments

#15 - boxedlabels = TRUE doesn't work

Issue - State: closed - Opened by swvanderlaan over 5 years ago - 4 comments

#14 - zero pvalues after lfcshrink

Issue - State: closed - Opened by MichaelPeibo over 5 years ago - 8 comments

#13 - Error: Aesthetics must be either length 1 or the same as the data (1267): colour

Issue - State: closed - Opened by 13479776 over 5 years ago - 3 comments

#12 - Missing arrguments

Issue - State: closed - Opened by drhmoosavi over 5 years ago - 7 comments

#11 - Rownames despite below threshold

Issue - State: closed - Opened by susheelbhanu over 5 years ago - 14 comments

#10 - Feature request: adjust color and Legend according to freely defined cutoff lines

Issue - State: closed - Opened by benqhan over 5 years ago - 7 comments

#9 - Error in EnhancedVolcano(res1, lab = rownames(res1), x = "logFC", y = "FDR", : unused argument (shape = 1)

Issue - State: closed - Opened by patrick-douglas over 5 years ago - 1 comment

GitHub / kevinblighe/EnhancedVolcano issues and pull requests