Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / kennethenevoldsen/dna2vec issues and pull requests
#42 - check tests
Issue -
State: open - Opened by KennethEnevoldsen 3 months ago
#42 - check tests
Issue -
State: open - Opened by KennethEnevoldsen 3 months ago
#41 - clean up unused files
Issue -
State: open - Opened by KennethEnevoldsen 3 months ago
#41 - clean up unused files
Issue -
State: open - Opened by KennethEnevoldsen 3 months ago
#40 - Publish model
Issue -
State: open - Opened by KennethEnevoldsen 3 months ago
#40 - Publish model
Issue -
State: open - Opened by KennethEnevoldsen 3 months ago
#39 - remove docs folder
Issue -
State: open - Opened by KennethEnevoldsen 3 months ago
#39 - remove docs folder
Issue -
State: open - Opened by KennethEnevoldsen 3 months ago
#38 - Enable Loading model on Transformers
Issue -
State: open - Opened by shreyasrajesh0308 3 months ago
#38 - Enable Loading model on Transformers
Issue -
State: open - Opened by shreyasrajesh0308 3 months ago
#37 - remove additional branches
Issue -
State: open - Opened by KennethEnevoldsen 3 months ago
#37 - remove additional branches
Issue -
State: open - Opened by KennethEnevoldsen 3 months ago
#36 - ensure that dependencies are correct
Issue -
State: open - Opened by KennethEnevoldsen 3 months ago
#36 - ensure that dependencies are correct
Issue -
State: open - Opened by KennethEnevoldsen 3 months ago
#35 - Updated the readme's
Issue -
State: open - Opened by KennethEnevoldsen 3 months ago
#35 - Updated the readme's
Issue -
State: open - Opened by KennethEnevoldsen 3 months ago
#34 - Add custom read/fragment CLS token
Pull Request -
State: closed - Opened by KennethEnevoldsen 12 months ago
#34 - Add custom read/fragment CLS token
Pull Request -
State: closed - Opened by KennethEnevoldsen 12 months ago
#33 - New loss
Pull Request -
State: closed - Opened by shreyasrajesh0308 12 months ago
- 1 comment
#33 - New loss
Pull Request -
State: closed - Opened by shreyasrajesh0308 12 months ago
- 1 comment
#32 - Evaluate refinements
Pull Request -
State: closed - Opened by pholur over 1 year ago
#32 - Evaluate refinements
Pull Request -
State: closed - Opened by pholur over 1 year ago
#31 - Update readme.md
Pull Request -
State: closed - Opened by pholur over 1 year ago
#31 - Update readme.md
Pull Request -
State: closed - Opened by pholur over 1 year ago
#30 - Minor bug fixes and patch
Pull Request -
State: closed - Opened by pholur over 1 year ago
- 1 comment
Labels: enhancement
#30 - Minor bug fixes and patch
Pull Request -
State: closed - Opened by pholur over 1 year ago
- 1 comment
Labels: enhancement
#29 - Inexact matching should be allowed.
Issue -
State: closed - Opened by pholur over 1 year ago
Labels: enhancement
#29 - Inexact matching should be allowed.
Issue -
State: closed - Opened by pholur over 1 year ago
Labels: enhancement
#28 - Chromosome metadata on `Pinecone` is hardcoded to 4 characters which fails for `XX` chromosomes.
Issue -
State: closed - Opened by pholur over 1 year ago
Labels: bug
#28 - Chromosome metadata on `Pinecone` is hardcoded to 4 characters which fails for `XX` chromosomes.
Issue -
State: closed - Opened by pholur over 1 year ago
Labels: bug
#27 - KennethEnevoldsen/issue-`map_reads_to_reference`-function---`readreference_start`-returns-chromosome-specific-index-not-global-index
Pull Request -
State: closed - Opened by KennethEnevoldsen over 1 year ago
- 1 comment
#27 - KennethEnevoldsen/issue-`map_reads_to_reference`-function---`readreference_start`-returns-chromosome-specific-index-not-global-index
Pull Request -
State: closed - Opened by KennethEnevoldsen over 1 year ago
- 1 comment
#26 - Retraining model
Pull Request -
State: closed - Opened by KennethEnevoldsen over 1 year ago
#26 - Retraining model
Pull Request -
State: closed - Opened by KennethEnevoldsen over 1 year ago
#25 - retrain model using 150-500 length subsequences
Issue -
State: closed - Opened by KennethEnevoldsen over 1 year ago
Labels: enhancement
#25 - retrain model using 150-500 length subsequences
Issue -
State: closed - Opened by KennethEnevoldsen over 1 year ago
Labels: enhancement
#24 - Patch full genome downstream
Pull Request -
State: closed - Opened by pholur over 1 year ago
#24 - Patch full genome downstream
Pull Request -
State: closed - Opened by pholur over 1 year ago
#23 - `map_reads_to_reference` function - `read.reference_start` returns chromosome-specific index, not global index
Issue -
State: closed - Opened by pholur over 1 year ago
Labels: bug
#23 - `map_reads_to_reference` function - `read.reference_start` returns chromosome-specific index, not global index
Issue -
State: closed - Opened by pholur over 1 year ago
Labels: bug
#22 - Added whole chromosome training
Pull Request -
State: closed - Opened by KennethEnevoldsen over 1 year ago
#22 - Added whole chromosome training
Pull Request -
State: closed - Opened by KennethEnevoldsen over 1 year ago
#21 - Train using simulated reads
Issue -
State: closed - Opened by KennethEnevoldsen over 1 year ago
Labels: enhancement
#21 - Train using simulated reads
Issue -
State: closed - Opened by KennethEnevoldsen over 1 year ago
Labels: enhancement
#20 - Testbench
Pull Request -
State: closed - Opened by pholur over 1 year ago
- 1 comment
#20 - Testbench
Pull Request -
State: closed - Opened by pholur over 1 year ago
- 1 comment
#19 - Added latest training version
Pull Request -
State: closed - Opened by KennethEnevoldsen over 1 year ago
- 1 comment
#19 - Added latest training version
Pull Request -
State: closed - Opened by KennethEnevoldsen over 1 year ago
- 1 comment
#18 - Added option to simulate read using ART
Pull Request -
State: closed - Opened by KennethEnevoldsen over 1 year ago
#18 - Added option to simulate read using ART
Pull Request -
State: closed - Opened by KennethEnevoldsen over 1 year ago
#17 - Testbench
Pull Request -
State: closed - Opened by pholur over 1 year ago
- 2 comments
#17 - Testbench
Pull Request -
State: closed - Opened by pholur over 1 year ago
- 2 comments
#16 - Add edit distance regularisation
Issue -
State: closed - Opened by KennethEnevoldsen over 1 year ago
- 1 comment
Labels: wontfix
#16 - Add edit distance regularisation
Issue -
State: closed - Opened by KennethEnevoldsen over 1 year ago
- 1 comment
Labels: wontfix
#15 - Testbench
Pull Request -
State: closed - Opened by pholur over 1 year ago
- 4 comments
#15 - Testbench
Pull Request -
State: closed - Opened by pholur over 1 year ago
- 4 comments
#14 - 16bit precision
Issue -
State: closed - Opened by KennethEnevoldsen over 1 year ago
Labels: enhancement
#14 - 16bit precision
Issue -
State: closed - Opened by KennethEnevoldsen over 1 year ago
Labels: enhancement
#13 - Uppercase in fragment / subsequence?
Issue -
State: closed - Opened by KennethEnevoldsen over 1 year ago
#13 - Uppercase in fragment / subsequence?
Issue -
State: closed - Opened by KennethEnevoldsen over 1 year ago
#12 - Added new sampling strategy
Pull Request -
State: closed - Opened by KennethEnevoldsen over 1 year ago
- 1 comment
#12 - Added new sampling strategy
Pull Request -
State: closed - Opened by KennethEnevoldsen over 1 year ago
- 1 comment
#11 - Second iteration
Pull Request -
State: closed - Opened by KennethEnevoldsen almost 2 years ago
#11 - Second iteration
Pull Request -
State: closed - Opened by KennethEnevoldsen almost 2 years ago
#10 - Model works
Pull Request -
State: closed - Opened by KennethEnevoldsen almost 2 years ago
#10 - Model works
Pull Request -
State: closed - Opened by KennethEnevoldsen almost 2 years ago
#9 - Added model
Pull Request -
State: closed - Opened by KennethEnevoldsen almost 2 years ago
#8 - Tokenizers
Pull Request -
State: closed - Opened by pholur almost 2 years ago
#7 - Casing in the reference genome seems to be meaningful
Issue -
State: closed - Opened by KennethEnevoldsen almost 2 years ago
Labels: ask Mattheo
#6 - Add files via upload
Pull Request -
State: closed - Opened by thaliageorgiou08 almost 2 years ago
- 1 comment
#5 - Added outline for training loop
Pull Request -
State: closed - Opened by KennethEnevoldsen almost 2 years ago
#4 - added example for reading fasta
Pull Request -
State: closed - Opened by thaliageorgiou08 almost 2 years ago
- 1 comment
#3 - Added model
Pull Request -
State: closed - Opened by KennethEnevoldsen almost 2 years ago
- 2 comments
#1 - Pinecone
Pull Request -
State: closed - Opened by pholur almost 2 years ago