Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / keller-mark/pizzarr issues and pull requests

#112 - Error in writing character arrays with arbitrary size

Issue - State: open - Opened by Artur-man 2 months ago - 1 comment
Labels: bug

#111 - `[` vs `slice` indexing

Issue - State: open - Opened by Artur-man 2 months ago

#109 - `tree` method for groups

Issue - State: open - Opened by Artur-man 2 months ago

#108 - Orthogonal selection

Pull Request - State: closed - Opened by Artur-man 2 months ago - 6 comments

#107 - Indexing for arbitrary elements of dimensions

Issue - State: open - Opened by Artur-man 3 months ago - 7 comments

#106 - Update remote-anndata.Rmd

Pull Request - State: closed - Opened by keller-mark 4 months ago - 1 comment

#105 - pbapply `cl` argument can't be an integer when using windows

Issue - State: open - Opened by dblodgett-usgs 5 months ago
Labels: bug

#104 - Implement selection and related methods

Issue - State: open - Opened by dblodgett-usgs 5 months ago - 1 comment

#103 - Implement array get methods.

Issue - State: open - Opened by dblodgett-usgs 5 months ago - 1 comment

#101 - Document internal methods of ZarrArray class.

Issue - State: open - Opened by dblodgett-usgs 5 months ago

#100 - Validations in utils.R

Issue - State: open - Opened by dblodgett-usgs 5 months ago

#99 - *_from_keys() abstract methods

Issue - State: open - Opened by dblodgett-usgs 5 months ago

#98 - FSStore?

Issue - State: open - Opened by dblodgett-usgs 5 months ago

#96 - Implement RawArray

Issue - State: open - Opened by dblodgett-usgs 5 months ago

#95 - CRAN preparations

Issue - State: open - Opened by keller-mark 5 months ago - 4 comments
Labels: enhancement

#94 - Fix GH action status

Issue - State: open - Opened by keller-mark 5 months ago
Labels: bug

#93 - Documentation updates.

Pull Request - State: open - Opened by dblodgett-usgs 5 months ago - 4 comments

#92 - Fix guess_chunks to prevent infinite loop

Pull Request - State: closed - Opened by keller-mark 5 months ago

#91 - Read/write in parallel

Pull Request - State: closed - Opened by keller-mark 5 months ago - 3 comments

#90 - Fix zero-element bugs. Add tests. Use file.path in more places.

Pull Request - State: closed - Opened by keller-mark 5 months ago

#89 - Test handling of zero-element / empty arrays

Issue - State: closed - Opened by keller-mark 5 months ago
Labels: bug, enhancement

#88 - fix up README.md

Pull Request - State: closed - Opened by dblodgett-usgs 5 months ago

#87 - dog.ome.zarr is 6MB and .* files through lots of check notes.

Issue - State: open - Opened by dblodgett-usgs 5 months ago - 1 comment
Labels: bug

#86 - Slice is mentioned in documentation but not exported.

Issue - State: open - Opened by dblodgett-usgs 6 months ago - 1 comment
Labels: bug, documentation

#85 - Compatibility with xarray for #18 and R CMD check cleanup

Pull Request - State: closed - Opened by dblodgett-usgs 6 months ago - 6 comments

#84 - Roxygen Documentation Clean Up

Issue - State: open - Opened by dblodgett-usgs 6 months ago
Labels: documentation

#83 - Cache control

Issue - State: closed - Opened by dblodgett-usgs 6 months ago
Labels: enhancement

#82 - listdir in HttpStore and use consolidated metadata

Pull Request - State: closed - Opened by dblodgett-usgs 6 months ago

#81 - Doco

Pull Request - State: closed - Opened by dblodgett-usgs 6 months ago - 4 comments

#80 - Doco

Pull Request - State: closed - Opened by dblodgett-usgs 6 months ago

#79 - listdir for http store

Issue - State: closed - Opened by dblodgett-usgs 6 months ago - 6 comments

#78 - Zip store

Issue - State: open - Opened by dblodgett-usgs 6 months ago - 1 comment
Labels: enhancement, good first issue

#77 - Read and use consolidated metadata when available

Issue - State: closed - Opened by keller-mark 6 months ago - 3 comments
Labels: enhancement

#76 - Basic documentation updates for introspection of a store

Pull Request - State: closed - Opened by dblodgett-usgs 6 months ago - 1 comment

#75 - Basic introspection demo

Issue - State: closed - Opened by dblodgett-usgs 6 months ago - 2 comments

#74 - Account for order C

Pull Request - State: closed - Opened by keller-mark 6 months ago

#73 - Rmdir

Pull Request - State: closed - Opened by keller-mark 6 months ago

#72 - store$contains_item for sub_paths?

Issue - State: open - Opened by keller-mark 6 months ago - 1 comment
Labels: enhancement

#71 - listdir for Stores that support it

Issue - State: closed - Opened by keller-mark 6 months ago
Labels: enhancement

#70 - Fix vlen-utf8 usage via zarr_create

Pull Request - State: closed - Opened by keller-mark 6 months ago

#69 - del_item for Stores

Issue - State: closed - Opened by keller-mark 6 months ago
Labels: enhancement

#68 - Support modification of attributes

Pull Request - State: closed - Opened by keller-mark 6 months ago

#67 - Support attrs on empty store

Pull Request - State: closed - Opened by keller-mark 6 months ago

#66 - Fix bug and add tests and anndataR fixtures

Pull Request - State: closed - Opened by keller-mark 6 months ago

#65 - Zero-dimensional bug fixes for anndata examples

Issue - State: closed - Opened by keller-mark 6 months ago
Labels: bug

#64 - zarr_open function for unknown group vs array

Issue - State: closed - Opened by keller-mark 6 months ago
Labels: enhancement

#63 - Convenience functions for save_array and open_array

Pull Request - State: closed - Opened by keller-mark 9 months ago

#62 - Write new zarr object to disk

Issue - State: closed - Opened by aloboa 9 months ago

#61 - Error handling when accessing attrs on a group without `.zattrs` file

Issue - State: closed - Opened by keller-mark about 1 year ago - 1 comment

#59 - lexical error when reading SpatialData example OME-NGFFs

Issue - State: closed - Opened by lgeistlinger about 1 year ago - 5 comments
Labels: bug

#58 - S3 methods for as.array and bracket notation

Pull Request - State: closed - Opened by keller-mark about 1 year ago

#57 - Update index.md

Pull Request - State: closed - Opened by keller-mark about 1 year ago

#56 - Fix namespace

Pull Request - State: closed - Opened by keller-mark about 1 year ago

#55 - VLen-UTF8 codec. Refactoring and bug fixes

Pull Request - State: closed - Opened by keller-mark about 1 year ago

#54 - Fail in CI if NAMESPACE or Roxygen docs are out of date

Issue - State: open - Opened by keller-mark about 1 year ago - 1 comment
Labels: documentation, enhancement

#53 - Use bit64 for 64-bit integer support

Issue - State: open - Opened by keller-mark about 1 year ago
Labels: enhancement, investigation

#52 - Class for dtype

Pull Request - State: closed - Opened by keller-mark about 1 year ago

#51 - String dtypes

Pull Request - State: closed - Opened by keller-mark about 1 year ago

#50 - Regexes for dtype utilities

Pull Request - State: closed - Opened by keller-mark about 1 year ago

#49 - Add indexing/slicing docs

Issue - State: open - Opened by keller-mark about 1 year ago - 1 comment
Labels: documentation, enhancement

#48 - S3/S4-based wrappers around R6 classes for more R-like API

Issue - State: open - Opened by keller-mark about 1 year ago - 5 comments
Labels: enhancement

#47 - Remote OME-NGFF example

Pull Request - State: closed - Opened by keller-mark about 1 year ago

#46 - Add codecs

Pull Request - State: closed - Opened by keller-mark about 1 year ago

#45 - Tests for boolean/logical arrays

Issue - State: closed - Opened by keller-mark about 1 year ago
Labels: enhancement

#44 - Support for boolean array indexing

Issue - State: open - Opened by keller-mark about 1 year ago - 1 comment
Labels: enhancement

#43 - Support for integer indexing

Issue - State: open - Opened by keller-mark about 1 year ago - 2 comments
Labels: enhancement

#42 - Test with step > 1

Issue - State: closed - Opened by keller-mark about 1 year ago - 2 comments
Labels: enhancement

#41 - Test with negative step

Issue - State: open - Opened by keller-mark about 1 year ago - 2 comments
Labels: enhancement

#40 - Add tests with ":" indexing

Issue - State: closed - Opened by keller-mark about 1 year ago - 4 comments
Labels: enhancement

#39 - Fix multi-chunk selections

Pull Request - State: closed - Opened by keller-mark about 1 year ago - 1 comment

#38 - HTTP store

Pull Request - State: closed - Opened by keller-mark about 1 year ago

#37 - Support for both C and F order

Issue - State: closed - Opened by keller-mark about 1 year ago
Labels: enhancement

#36 - OME-Zarr example

Issue - State: closed - Opened by keller-mark about 1 year ago
Labels: documentation, enhancement

#35 - Remove matrix_to_zarr function

Pull Request - State: closed - Opened by keller-mark about 1 year ago

#34 - Codec for transform (v3)

Issue - State: open - Opened by keller-mark about 1 year ago
Labels: enhancement

#33 - Codec for Zlib

Issue - State: closed - Opened by keller-mark about 1 year ago
Labels: enhancement, good first issue

#32 - Codec for Blosc

Issue - State: closed - Opened by keller-mark about 1 year ago
Labels: enhancement, good first issue

#31 - Tests for performance: speed

Issue - State: open - Opened by keller-mark about 1 year ago
Labels: enhancement, investigation

#30 - Compression

Pull Request - State: closed - Opened by keller-mark about 1 year ago

#29 - Tests for lz4 and zstd

Pull Request - State: closed - Opened by keller-mark about 1 year ago

#28 - Raw <-> NestedArray

Pull Request - State: closed - Opened by keller-mark about 1 year ago

#27 - WIP: Compression

Pull Request - State: closed - Opened by keller-mark about 1 year ago - 1 comment

#26 - Remove abind usage

Pull Request - State: closed - Opened by keller-mark about 1 year ago

#25 - Add group class, add metadata2 class, update naming

Pull Request - State: closed - Opened by keller-mark about 1 year ago

#24 - Tests for performance: memory

Issue - State: open - Opened by keller-mark about 1 year ago
Labels: enhancement, investigation

#23 - R-based indexing

Pull Request - State: closed - Opened by keller-mark about 1 year ago

#22 - Object dtype support and vlen-utf8 filter

Issue - State: closed - Opened by keller-mark over 1 year ago
Labels: enhancement

#21 - Fix pkgdown - downgrade and fix .yml file

Pull Request - State: closed - Opened by keller-mark over 1 year ago

#20 - Better naming

Issue - State: closed - Opened by keller-mark over 1 year ago
Labels: enhancement, good first issue

#19 - Tests for NestedArray

Issue - State: closed - Opened by keller-mark over 1 year ago
Labels: enhancement, good first issue

#18 - More tests for compatibility with zarr-python implementation

Issue - State: closed - Opened by keller-mark over 1 year ago - 3 comments
Labels: enhancement

#17 - More docs

Pull Request - State: closed - Opened by keller-mark over 1 year ago

#16 - Fix test, update docs

Pull Request - State: closed - Opened by keller-mark over 1 year ago

#15 - Support v3 spec

Issue - State: open - Opened by keller-mark over 1 year ago
Labels: enhancement

#14 - Unit tests for Indexer classes

Issue - State: closed - Opened by keller-mark over 1 year ago - 2 comments
Labels: enhancement, good first issue

#13 - Array$get_item subsetting

Issue - State: closed - Opened by keller-mark over 1 year ago
Labels: bug