Ecosyste.ms: Issues

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GitHub / kazewong/flowMC issues and pull requests

#181 - No module named 'flowMC.sampler'

Issue - State: closed - Opened by Felipe-4 4 months ago - 4 comments

#180 - Update optax requirement and remove testing print statement

Pull Request - State: open - Opened by thomasckng 4 months ago

#179 - New script to generate useful plots

Pull Request - State: closed - Opened by Qazalbash 5 months ago

#178 - Bug in postprocessing script

Issue - State: closed - Opened by Qazalbash 5 months ago

#177 - Validating flowMC Results on Unlabeled Data

Issue - State: open - Opened by Qazalbash 5 months ago - 9 comments

#176 - minor fix of the example using a non-jax likelihood

Pull Request - State: closed - Opened by marylou-gabrie 6 months ago

#175 - Implement flow matching

Issue - State: open - Opened by kazewong 6 months ago
Labels: enhancement

#174 - Refine strategy interface

Issue - State: open - Opened by kazewong 6 months ago
Labels: enhancement

#173 - Why do we have to pass data two times?

Issue - State: closed - Opened by Qazalbash 6 months ago - 1 comment
Labels: question

#171 - 170 lower precision training

Pull Request - State: closed - Opened by kazewong 7 months ago

#170 - Lower precision training

Issue - State: closed - Opened by kazewong 7 months ago - 1 comment
Labels: enhancement

#169 - update example and add print summary to Sampler

Pull Request - State: closed - Opened by ThibeauWouters 7 months ago

#167 - Update examples

Issue - State: open - Opened by ThibeauWouters 7 months ago

#165 - Add probability floor to normalizing flow model

Issue - State: closed - Opened by kazewong 7 months ago

#164 - 163 implement optimization strategy

Pull Request - State: closed - Opened by kazewong 7 months ago

#163 - Implement optimization strategy

Issue - State: closed - Opened by kazewong 8 months ago
Labels: enhancement

#162 - TypeError: unsupported operand type(s) for *: `dict` and `dict` in MALA.py after flowMC-v3.0.0 release

Issue - State: closed - Opened by Qazalbash 8 months ago - 4 comments
Labels: documentation

#161 - 157 making sampler composable

Pull Request - State: closed - Opened by kazewong 8 months ago

#160 - 158 put training loop into nf class

Pull Request - State: closed - Opened by kazewong 8 months ago

#158 - Put training loop into NF class

Issue - State: closed - Opened by kazewong 8 months ago
Labels: enhancement

#157 - Making sampler composable

Issue - State: closed - Opened by kazewong 8 months ago
Labels: enhancement

#156 - 142 sampling from arrays

Pull Request - State: closed - Opened by kazewong 8 months ago

#155 - Sync branch 142

Pull Request - State: closed - Opened by kazewong 8 months ago

#154 - 153 use scan to reduce nf compilation time

Pull Request - State: closed - Opened by kazewong 8 months ago

#153 - Use scan to reduce NF compilation time

Issue - State: closed - Opened by kazewong 8 months ago
Labels: enhancement

#152 - 144 get rid of random key set

Pull Request - State: closed - Opened by kazewong 8 months ago
Labels: bug

#151 - 134 add precommit script and fix formatting

Pull Request - State: closed - Opened by kazewong 8 months ago
Labels: enhancement

#150 - Sync branch 134

Pull Request - State: closed - Opened by kazewong 8 months ago

#149 - Question regarding the data for the log-likelihood

Issue - State: closed - Opened by Qazalbash 9 months ago - 3 comments

#148 - small bug fix in keys for stepping optimizer

Pull Request - State: closed - Opened by tedwards2412 9 months ago

#147 - Early stopping based on global acceptance rate

Pull Request - State: closed - Opened by ThibeauWouters 9 months ago - 3 comments

#146 - Bayeux example

Pull Request - State: closed - Opened by kazewong 10 months ago

#145 - Clean up parameter names

Issue - State: closed - Opened by kazewong 10 months ago - 1 comment

#144 - Get rid of random_key_set

Issue - State: closed - Opened by kazewong 10 months ago

#143 - Added plotting utilities and refactored hyperparams

Pull Request - State: closed - Opened by ThibeauWouters 10 months ago - 4 comments

#142 - Sampling from arrays

Issue - State: closed - Opened by ColCarroll 10 months ago

#141 - Question about integrating with bayeux

Issue - State: closed - Opened by ColCarroll 10 months ago - 9 comments

#140 - Ensemble training of normalizing flow

Issue - State: open - Opened by kazewong 10 months ago

#139 - Image of the function in tutorial

Issue - State: closed - Opened by Qazalbash 11 months ago - 1 comment

#138 - `jax.interpreters.pxla` has no attribute `ShardedDeviceArray`

Issue - State: closed - Opened by Qazalbash 11 months ago - 2 comments

#137 - 136 add flow hmc proposal

Pull Request - State: closed - Opened by kazewong about 1 year ago

#136 - Add flow-HMC proposal

Issue - State: closed - Opened by kazewong about 1 year ago

#134 - Add precommit script and fix formatting

Issue - State: closed - Opened by kazewong about 1 year ago

#133 - Lax scan recompile sampling loop everytime

Issue - State: closed - Opened by kazewong about 1 year ago

#132 - Sampler performance util

Pull Request - State: closed - Opened by kazewong about 1 year ago

#131 - Output thinning

Issue - State: closed - Opened by kazewong about 1 year ago

#130 - Gradient clipping

Issue - State: closed - Opened by kazewong about 1 year ago

#129 - Simplifying and unifying proposal interface.

Pull Request - State: closed - Opened by kazewong over 1 year ago

#128 - Make normalizing flow sampler share the same interface with the LocalSampler

Issue - State: closed - Opened by kazewong over 1 year ago - 1 comment

#127 - Make Likelihood function capatible to dictionary/PyTree

Issue - State: closed - Opened by kazewong over 1 year ago - 1 comment

#126 - Update README.md

Pull Request - State: closed - Opened by kazewong over 1 year ago

#125 - New doc

Pull Request - State: closed - Opened by kazewong over 1 year ago

#124 - 123 update dependencies version

Pull Request - State: closed - Opened by kazewong over 1 year ago

#123 - Update dependencies version

Issue - State: closed - Opened by kazewong over 1 year ago - 2 comments

#121 - Global-local auto tune algorithm

Issue - State: open - Opened by kazewong over 1 year ago - 1 comment

#120 - small update to dual moon tutorial

Pull Request - State: closed - Opened by marylou-gabrie over 1 year ago

#119 - Implementing Microcanonical HMC

Issue - State: open - Opened by kazewong over 1 year ago
Labels: enhancement

#118 - Black box optimization interface for finding maximum of the likelihood.

Issue - State: closed - Opened by kazewong over 1 year ago
Labels: enhancement

#117 - Extending to RJMCMC

Issue - State: open - Opened by mhycheung over 1 year ago

#116 - Data Batching, precompilation, and autotune

Pull Request - State: closed - Opened by kazewong over 1 year ago - 1 comment

#115 - Modify the variance of base distribution in RQSpline

Pull Request - State: closed - Opened by alicjapolanska over 1 year ago - 1 comment

#114 - Improve MALA autotune by adjusting step size per dimension

Issue - State: open - Opened by thomasckng over 1 year ago - 1 comment

#113 - i-SiR iterated sampling importance resampling

Issue - State: open - Opened by kazewong over 1 year ago
Labels: enhancement

#112 - Annealing of the target

Issue - State: open - Opened by kazewong over 1 year ago
Labels: enhancement

#111 - Precompile kernel

Issue - State: closed - Opened by kazewong over 1 year ago
Labels: enhancement

#110 - Data batching

Issue - State: closed - Opened by kazewong over 1 year ago
Labels: enhancement

#109 - Put example on colab

Issue - State: open - Opened by kazewong over 1 year ago - 1 comment
Labels: documentation

#108 - Add evaluate normalizing flow functionality in util and Sampler

Pull Request - State: closed - Opened by kazewong over 1 year ago

#107 - 103 control verbose for thorough experiments

Pull Request - State: closed - Opened by kazewong over 1 year ago

#106 - Syncing branch

Pull Request - State: closed - Opened by kazewong over 1 year ago

#105 - Save / restore sampler / learned state?

Issue - State: open - Opened by ahnitz over 1 year ago - 1 comment

#103 - Control verbose for thorough experiments

Issue - State: closed - Opened by marylou-gabrie over 1 year ago
Labels: enhancement

#102 - Bumping distrax version to 1.3

Pull Request - State: closed - Opened by kazewong over 1 year ago

#101 - Fix typos and small improvements to flow of JOSS paper text

Pull Request - State: closed - Opened by matt-graham over 1 year ago - 1 comment

#100 - Tests fail on Python 3.8 and 3.9 due to upstream issue in `distrax`

Issue - State: closed - Opened by matt-graham over 1 year ago - 2 comments

#99 - Add close to Gaussian test

Pull Request - State: closed - Opened by kazewong over 1 year ago

#98 - Put short examples in generated functions docs

Issue - State: closed - Opened by kazewong over 1 year ago - 1 comment
Labels: documentation

#97 - Setup workflow for building documentation and publish package to PyPI

Issue - State: closed - Opened by kazewong over 1 year ago - 2 comments
Labels: good first issue

#96 - Sync documentation branch with main

Pull Request - State: closed - Opened by kazewong over 1 year ago

#95 - 79 no tests for correctness of components

Pull Request - State: closed - Opened by kazewong almost 2 years ago - 1 comment

#94 - Dependencies pinning

Issue - State: closed - Opened by kazewong almost 2 years ago - 1 comment

#93 - Parsing arguments other than x into log-posterior probability functions

Issue - State: closed - Opened by bjricketts almost 2 years ago - 5 comments

#92 - Sync main to test branch

Pull Request - State: closed - Opened by kazewong almost 2 years ago

#91 - 85 contribution guide

Pull Request - State: closed - Opened by kazewong almost 2 years ago
Labels: documentation

#90 - Keep the potential energy (negative log likelihood) instead of the ha…

Pull Request - State: closed - Opened by kazewong almost 2 years ago - 1 comment

#89 - bringing python version to range 3.8 - 3.10.x

Pull Request - State: closed - Opened by marylou-gabrie almost 2 years ago

#88 - 83 inconsistent and missing docstring on public methods

Pull Request - State: closed - Opened by marylou-gabrie almost 2 years ago - 1 comment

#87 - Update test_quickstart.py

Pull Request - State: closed - Opened by kazewong almost 2 years ago

#86 - Delete unused progress bar files

Pull Request - State: closed - Opened by kazewong almost 2 years ago

#85 - Contribution guide

Issue - State: closed - Opened by daniel-dodd almost 2 years ago - 1 comment
Labels: Joss

#84 - `progress_bar_scan` credit

Issue - State: closed - Opened by daniel-dodd almost 2 years ago - 1 comment

#83 - Inconsistent and missing docstring on public methods.

Issue - State: closed - Opened by daniel-dodd almost 2 years ago - 1 comment
Labels: Joss

#82 - Suggested changes to text of JOSS paper

Issue - State: closed - Opened by matt-graham almost 2 years ago - 6 comments
Labels: Joss

#81 - Automated test workflows

Issue - State: closed - Opened by daniel-dodd almost 2 years ago - 2 comments
Labels: Joss