kaskr/adcomp issues and pull requests

#398 - Missing numeric_limits specialization

Issue - State: open - Opened by kaskr 3 months ago

#397 - CRAN check issue

Issue - State: closed - Opened by James-Thorson-NOAA 4 months ago

#396 - Bugs occur updating 1.9.12 to 1.9.13

Issue - State: closed - Opened by trafficfan 5 months ago - 1 comment

#395 - R-devel (r86800) breaks TMB:::isNullPointer

Issue - State: closed - Opened by jaganmn 5 months ago - 4 comments

#394 - TMB upgrade from 1.9.11 to 1.9.12 fails under R 4.4.1

Issue - State: closed - Opened by lghunsicker 5 months ago - 4 comments

#393 - use Matrix API for SEXP->(cholmod_factor *) coercion

Pull Request - State: closed - Opened by jaganmn 8 months ago - 3 comments

#392 - TMB fails under Web R: "cannot open the connection [...] /usr/lib/R/library/TMB/Matrix-version"

Issue - State: closed - Opened by adrianolszewski 8 months ago - 5 comments

#391 - Issue with integer and numeric data class or type for obj$simulate(complete=TRUE)

Issue - State: closed - Opened by timjmiller 8 months ago - 3 comments

#390 - Parallel code crashes with 1 core

Issue - State: closed - Opened by BertvanderVeen 9 months ago - 5 comments
Labels: Bug

#389 - new (?) warnings when installing `glmmTMB`

Issue - State: closed - Opened by bbolker 12 months ago - 1 comment

#388 - don't rely on partial matching

Issue - State: closed - Opened by jaganmn about 1 year ago

#387 - more detailed explanation of Matrix/TMB compatibility requirements?

Issue - State: closed - Opened by bbolker about 1 year ago - 17 comments

#386 - NAs produced when computing confidence intervals with tmbprofile() and confint()

Issue - State: closed - Opened by constantin-george about 1 year ago - 2 comments

#385 - Non-interactive gdbsource hangs under windows

Issue - State: closed - Opened by lentinj over 1 year ago - 1 comment

#384 - Remove unused `total` variable

Pull Request - State: closed - Opened by danielinteractive over 1 year ago - 4 comments

#383 - Use workaround to avoid Wunused-but-set-variable warnings

Pull Request - State: closed - Opened by danielinteractive over 1 year ago - 1 comment

#382 - gdbsource CRAN

Issue - State: closed - Opened by kaskr over 1 year ago - 1 comment

#381 - make CXXFLAGS += -Wno-ignored-attributes

Issue - State: open - Opened by bbolker over 1 year ago

#380 - determinant(Cholesky(A, ...)) in forthcoming Matrix

Issue - State: closed - Opened by jaganmn over 1 year ago - 3 comments

#379 - Misuse of `M_chm_sparse_to_SEXP` by `tmb_invQ_tril_halfdiag`

Issue - State: closed - Opened by jaganmn over 1 year ago - 2 comments

#378 - Eigen 3.4?

Issue - State: closed - Opened by kklot over 1 year ago - 1 comment

#377 - lhs.cols() == rhs.rows() && "invalid matrix product" && "if you wanted a coeff-wise or a dot product use the respective explicit functions"

Issue - State: closed - Opened by yaoGithub2018 over 1 year ago - 3 comments

#376 - besselK problem when used inside function for gauss_kronrod integration

Issue - State: closed - Opened by alexiosg almost 2 years ago - 2 comments

#375 - Book generation code is broken somewhere

Issue - State: closed - Opened by bbolker almost 2 years ago - 1 comment

#374 - TMBad documentation?

Issue - State: closed - Opened by bbolker almost 2 years ago - 4 comments

#373 - build failure with development version of Matrix (1.5.4): NEW_INTEGER macro not found

Issue - State: closed - Opened by bbolker almost 2 years ago - 2 comments

#372 - `dmultinom` cause NaN when zeros are present in `p`

Issue - State: closed - Opened by Craig44 almost 2 years ago - 1 comment

#371 - Sparse matrix change in new Matrix library

Issue - State: closed - Opened by Craig44 almost 2 years ago - 2 comments

#370 - Added atomic matrix square root function

Pull Request - State: closed - Opened by lawlerem about 2 years ago - 7 comments

#369 - Reducing R package lib size further?...

Issue - State: closed - Opened by danielinteractive about 2 years ago - 6 comments

#368 - Error: "Atomic order not implemented"

Issue - State: closed - Opened by awstringer1 about 2 years ago - 4 comments

#367 - Out-of-bounds error not detected with gdbsource debugger

Issue - State: closed - Opened by iperedaagirre over 2 years ago - 2 comments

#366 - error in OneStepGeneric method of TMB::oneStepPredict

Issue - State: open - Opened by timjmiller over 2 years ago

#365 - R-session crash during MakeADFun using TMBad but not using CppAD

Issue - State: closed - Opened by James-Thorson-NOAA over 2 years ago - 3 comments

#364 - Improvement of help for oneStepPredict

Issue - State: closed - Opened by vtrijoulet over 2 years ago - 1 comment

#363 - tmbutils: Add print method to vectors

Pull Request - State: closed - Opened by lentinj over 2 years ago - 1 comment

#362 - possibility for a warning when `if` is used inappropriately in TMB code

Issue - State: open - Opened by bbolker over 2 years ago - 2 comments
Labels: Wish list

#361 - Access to the adcomp wiki

Issue - State: open - Opened by kaskr over 2 years ago
Labels: News

#360 - `ARk` NaNs output from simulate

Issue - State: closed - Opened by kklot over 2 years ago - 1 comment

#359 - Segfault `runSymbolicAnalysis()` with two phases fitting approach

Issue - State: closed - Opened by kklot over 2 years ago - 3 comments

#358 - Fix CPPAD_FRAMEWORK error after `make_metis_full`

Pull Request - State: closed - Opened by kklot almost 3 years ago - 1 comment

#357 - Namespace declarations to enable Eigen/Tensor in TMB models

Pull Request - State: open - Opened by jeffeaton almost 3 years ago - 5 comments

#356 - `dnorm` is undocumented

Issue - State: closed - Opened by ChristineStawitz-NOAA almost 3 years ago

#355 - Update `obj$report()` when `intern=TRUE`

Issue - State: open - Opened by James-Thorson almost 3 years ago
Labels: Bug

#354 - add logspace_gamma to TMB

Issue - State: open - Opened by bbolker almost 3 years ago - 1 comment

#353 - TMB shared object not unloaded with namespace

Issue - State: closed - Opened by jaganmn about 3 years ago - 1 comment

#352 - `str(sdreport(obj))` throws an error due to `as.list.sdreport` default `what = ""`

Issue - State: closed - Opened by jaganmn about 3 years ago - 2 comments

#351 - TMB implementations of LKJ, Wishart, and inverse Wishart distributions

Issue - State: open - Opened by jaganmn about 3 years ago - 10 comments

#350 - Add RcppEigen to Imports

Issue - State: closed - Opened by Enchufa2 over 3 years ago - 2 comments

#349 - Problem with pbeta (qbeta) and AD

Issue - State: open - Opened by bobdouma over 3 years ago

#348 - improved error handling/documentation for inner optimization

Issue - State: closed - Opened by bbolker over 3 years ago - 8 comments

#347 - Difficulties with isfinite() on Windows machines

Issue - State: open - Opened by cschwarz-stat-sfu-ca over 3 years ago - 1 comment

#346 - The rate/scale parameter in rexp

Issue - State: open - Opened by xiangjiexue over 3 years ago

#345 - For large random-effects models, obj$fn() and obj$gr() return NaN after many iterations

Issue - State: closed - Opened by njhenry over 3 years ago - 4 comments

#344 - Compiler optimisation issues with R4+ TMB

Issue - State: closed - Opened by pjumppanen over 3 years ago - 2 comments

#343 - Cannot compile Simple linear regression example cpp template

Issue - State: closed - Opened by rasutt over 3 years ago - 3 comments

#342 - Big endian

Pull Request - State: closed - Opened by kaskr over 3 years ago

#341 - gdbsource() eats GDB errors

Issue - State: open - Opened by lentinj over 3 years ago - 1 comment

#340 - Simple example failure on big-endian systems

Issue - State: closed - Opened by ginggs almost 4 years ago - 5 comments
Labels: Bug

#339 - Loading model objects between different versions of TMB

Issue - State: open - Opened by kaskr almost 4 years ago
Labels: Wish list

#338 - Rare over-memory kill of TMB code, possible Transparent Huge Page interaction

Issue - State: closed - Opened by geoffreyphipps-uw almost 4 years ago - 6 comments

#337 - Metis reorderings segfault with Matrix v1.3

Issue - State: closed - Opened by jkbest2 almost 4 years ago - 1 comment
Labels: Bug

#336 - MakeADFun() throws error when all values of a vector are fixed with map= argument

Issue - State: open - Opened by jeffeaton almost 4 years ago - 2 comments
Labels: Docs

#335 - Failure of parallel example in a Xeon Platform

Issue - State: closed - Opened by chrisarg almost 4 years ago - 1 comment

#334 - add curl option to download suiteparse

Pull Request - State: closed - Opened by kklot almost 4 years ago - 1 comment

#333 - sdreport error when getReportCovariance=FALSE and no ADREPORT variables present

Issue - State: closed - Opened by James-Thorson-NOAA almost 4 years ago - 1 comment

#332 - Rtweedie

Pull Request - State: closed - Opened by kaskr almost 4 years ago - 6 comments

#331 - R crashes using the matern function

Issue - State: closed - Opened by BertvanderVeen about 4 years ago - 3 comments
Labels: Duplicate

#330 - Thread gc

Pull Request - State: closed - Opened by kaskr about 4 years ago

#329 - dox: Note that vectorized functions need to be casted

Pull Request - State: closed - Opened by lentinj about 4 years ago

#328 - Docs: concatination of vectors

Pull Request - State: closed - Opened by skaug about 4 years ago

#327 - Compilation error when including a boost::multiprecision header

Issue - State: open - Opened by yulanvanoppen about 4 years ago
Labels: Bug

#326 - tmbroot and tmbprofile fix

Pull Request - State: closed - Opened by bbolker about 4 years ago - 1 comment

#325 - lgamma() / lfactorial() not taking expressions

Issue - State: open - Opened by lentinj about 4 years ago - 3 comments
Labels: Wish list

#324 - fix tmbroot and tmbprofile for single-parameter models

Pull Request - State: closed - Opened by bbolker about 4 years ago - 1 comment

#323 - TMB fails to compile when using `renv`

Issue - State: closed - Opened by DanOvando over 4 years ago - 4 comments
Labels: Bug

#322 - Suggested option to use oneStepPredict(..., method="cdf" ) with delta-models

Pull Request - State: closed - Opened by James-Thorson-NOAA over 4 years ago - 3 comments

#321 - Opaque terminal messages during compilation using rtools40 and Eigen functions

Issue - State: closed - Opened by James-Thorson-NOAA over 4 years ago - 31 comments

#320 - GitHub releases are tracked incorrectly

Issue - State: closed - Opened by euclaise over 4 years ago - 2 comments
Labels: Docs

#319 - Memory manager change

Pull Request - State: closed - Opened by kaskr over 4 years ago

#314 - Simulate method not working for scaled separable term

Issue - State: open - Opened by kaskr over 4 years ago
Labels: Bug

#313 - Add row method to array

Pull Request - State: open - Opened by 2039 over 4 years ago - 3 comments

#311 - simplify `asDouble` and avoid the need for `WITH_LIBTMB` with by using

Pull Request - State: open - Opened by boennecd over 4 years ago - 1 comment

#297 - Some models (e.g. VAST) fail to compile with newer compilers

Issue - State: open - Opened by jkbest2 over 5 years ago - 17 comments
Labels: External

#296 - Unexpected output with 0/x

Issue - State: closed - Opened by mlysy over 5 years ago - 1 comment
Labels: Bug

#294 - SPA option in MakeADFUN

Pull Request - State: closed - Opened by Blunde1 over 5 years ago - 10 comments

#292 - Dynamic library is kept open after dyn.unload

Issue - State: open - Opened by lcroninfine almost 6 years ago
Labels: External

#290 - Which TMB wrapper might be giving me this warning: In par[-random] <- par.fixed: number of items to replace is not a multiple of replacement length

Issue - State: closed - Opened by bchasco about 6 years ago - 3 comments
Labels: Need more info

#289 - New TMB dependency on `make` in Windows - reducing reliability

Issue - State: closed - Opened by arni-magnusson about 6 years ago - 2 comments
Labels: Suggestion, Need more info, Installation

#277 - R 3.5.0, ubuntu 18.04, TMB + RcppEigen warnings, fatal error with linear regression example

Issue - State: closed - Opened by albsim over 6 years ago - 10 comments
Labels: Installation

#273 - Cygwin errror when attempting to run example

Issue - State: open - Opened by Hyuna0511 over 6 years ago
Labels: Examples, External

#233 - R CHECK warnings

Issue - State: closed - Opened by lpantano over 7 years ago - 5 comments

#215 - Problem with compiling .cpp files in R environment

Issue - State: closed - Opened by piaschuchert almost 8 years ago - 17 comments
Labels: Question

#209 - NAs in sdreport

Issue - State: open - Opened by ghost about 8 years ago
Labels: Need more info

#156 - Cleanly adding cpp code to an R file

Issue - State: closed - Opened by John-R-Wallace-NOAA about 9 years ago - 1 comment
Labels: Invalid

#127 - ADREPORT not working for vector< vector<Type> > (but REPORT does work)

Issue - State: open - Opened by casperwberg about 9 years ago - 2 comments

#75 - slice of 3d array

Issue - State: closed - Opened by mebrooks almost 10 years ago - 9 comments

#64 - using CppAD function that requires class definition

Issue - State: closed - Opened by mebrooks about 10 years ago - 3 comments

#60 - Compilation warnings about extra semicolon in macros

Issue - State: closed - Opened by alko989 about 10 years ago - 1 comment
Labels: Bug

#59 - Passing missing values via NA or NaN?

Issue - State: closed - Opened by James-Thorson about 10 years ago - 4 comments
Labels: Question

GitHub / kaskr/adcomp issues and pull requests