Ecosyste.ms: Issues

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GitHub / karel-brinda/samsift issues and pull requests

#24 - Python keywords cause errors when used as tag names

Issue - State: open - Opened by karel-brinda almost 6 years ago - 1 comment
Labels: bug

#23 - Add a moderately error-tolerant mode

Issue - State: open - Opened by karel-brinda almost 6 years ago

#22 - Add mode aliases

Issue - State: open - Opened by karel-brinda almost 7 years ago
Labels: enhancement

#21 - Fix RNG seed in default options

Issue - State: open - Opened by karel-brinda almost 7 years ago
Labels: enhancement

#20 - Add example: number of CIGAR operations & filtering soft-/hard-clipped reads

Issue - State: open - Opened by karel-brinda almost 7 years ago
Labels: enhancement

#19 - TypeError: Argument 'other' has incorrect type

Issue - State: closed - Opened by karel-brinda almost 7 years ago - 1 comment
Labels: invalid

#17 - Don't print warnings in the non-stop mode

Issue - State: open - Opened by karel-brinda almost 7 years ago

#16 - The re module can't be used

Issue - State: closed - Opened by karel-brinda almost 7 years ago
Labels: bug

#15 - Add an option to discarded filtered reads

Issue - State: open - Opened by karel-brinda over 7 years ago
Labels: enhancement

#14 - SAMsift 0.2.2

Pull Request - State: closed - Opened by karel-brinda over 7 years ago

#13 - Prevent unnecessary object creations

Issue - State: closed - Opened by karel-brinda over 7 years ago - 1 comment
Labels: enhancement

#12 - Add an auxiliar script for SAM normalization

Pull Request - State: closed - Opened by karel-brinda over 7 years ago

#11 - Add samsift-normalize-sam

Issue - State: closed - Opened by karel-brinda over 7 years ago

#10 - Tests: add an ad-hoc script to sort tags

Issue - State: closed - Opened by karel-brinda over 7 years ago

#9 - Tags change order during processing

Issue - State: closed - Opened by karel-brinda over 7 years ago
Labels: bug, wontfix

#8 - Clean cache

Pull Request - State: closed - Opened by karel-brinda over 7 years ago

#7 - Tags from previous alignments stay in cache

Issue - State: closed - Opened by karel-brinda over 7 years ago

#6 - Travis: Test multiple versions of PySam

Issue - State: open - Opened by karel-brinda over 7 years ago
Labels: enhancement

#5 - Add -0

Issue - State: closed - Opened by karel-brinda over 7 years ago - 1 comment

#4 - Missing headers when #alignments=0

Issue - State: closed - Opened by karel-brinda over 7 years ago - 1 comment
Labels: bug

#3 - Fix pipe errors (141, etc.)

Issue - State: closed - Opened by karel-brinda over 7 years ago - 1 comment

#2 - Add debugging triggers (print dbg message only for them)

Issue - State: closed - Opened by karel-brinda over 7 years ago - 1 comment

#1 - Add a command to add tags

Issue - State: closed - Opened by karel-brinda over 7 years ago - 1 comment