Ecosyste.ms: Issues

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GitHub / kantorlab/hivmmer issues and pull requests

#18 - hivmmer fails on report generation

Issue - State: open - Opened by jpflorido over 1 year ago - 2 comments

#17 - How to use pre-packaged reference files with --ref

Issue - State: open - Opened by mbyott about 2 years ago

#16 - Does hivmmer accept fastq.gz files as input?

Issue - State: open - Opened by LilyYe98 over 2 years ago

#15 - Instruction to build a pHMM reference

Issue - State: open - Opened by jihe-liu almost 4 years ago

#14 - access to aavf file

Issue - State: open - Opened by jihe-liu about 4 years ago

#13 - Fix handling of deletions in consensus.py

Issue - State: open - Opened by mhowison about 4 years ago

#12 - Reference enquiry

Issue - State: open - Opened by nadine-zakkak over 4 years ago - 1 comment

#10 - improve consistency of whole genome coverage

Issue - State: closed - Opened by mhowison almost 5 years ago

#9 - Reimplement hivmmer wrapper in Python to support whole genome

Issue - State: closed - Opened by mhowison about 5 years ago - 1 comment

#8 - Include prepackaged pHMMs for whole genome

Issue - State: closed - Opened by mhowison about 5 years ago

#7 - Determine optimal alignment score threshold

Issue - State: closed - Opened by mhowison about 5 years ago

#6 - Add QC stage for filtering on quality score and read length

Issue - State: closed - Opened by mhowison over 5 years ago

#5 - support for Gag?

Issue - State: closed - Opened by drescs over 5 years ago - 2 comments

#4 - What should I be using as a reference?

Issue - State: closed - Opened by drescs over 5 years ago - 6 comments

#3 - Subtype C

Issue - State: closed - Opened by roryk over 5 years ago - 4 comments

#2 - Validate hxb2 coordinates

Issue - State: closed - Opened by mhowison about 6 years ago

#1 - Report specific insertion codons

Issue - State: closed - Opened by mhowison about 6 years ago