Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / kaiko-ai/eva issues and pull requests

#505 - Merge `402` with the latest `main`

Issue - State: closed - Opened by ioangatop 8 months ago
Labels: aggregated-feature

#504 - Add support for offline total segmentator training

Pull Request - State: closed - Opened by ioangatop 8 months ago
Labels: vision, aggregated-feature

#503 - Fix default segmentation metrics

Pull Request - State: closed - Opened by ioangatop 8 months ago
Labels: bug, vision, aggregated-feature

#502 - Fix default segmentation metrics

Issue - State: closed - Opened by ioangatop 8 months ago
Labels: vision, aggregated-feature

#501 - Add support for multi-level embeddings training in segmentation tasks

Pull Request - State: closed - Opened by ioangatop 8 months ago
Labels: vision, aggregated-feature

#500 - Support for multi-level embeddings training in segmentation tasks

Issue - State: closed - Opened by ioangatop 8 months ago
Labels: vision, aggregated-feature

#499 - Make sure MultiWsiDataset are validated

Issue - State: closed - Opened by roman807 8 months ago

#498 - Update dependency torch to v2.3.1

Pull Request - State: closed - Opened by renovate[bot] 8 months ago - 2 comments
Labels: renovate

#497 - Update release strategy

Pull Request - State: open - Opened by ioangatop 8 months ago

#496 - Change release pypi strategy to `push: main`

Issue - State: open - Opened by ioangatop 8 months ago
Labels: ci

#495 - Refactor core embeddings based datasets

Pull Request - State: closed - Opened by ioangatop 8 months ago
Labels: core, refactoring

#494 - Update and refactor core embeddings dataset

Issue - State: closed - Opened by ioangatop 8 months ago
Labels: core, refactoring

#493 - fixed phikon configs

Pull Request - State: closed - Opened by roman807 8 months ago

#492 - Add doc tests and minor fixes

Pull Request - State: closed - Opened by ioangatop 8 months ago
Labels: documentation, ci

#491 - Add ci test for docs

Issue - State: closed - Opened by ioangatop 8 months ago
Labels: documentation, ci

#489 - Update paper citation

Pull Request - State: closed - Opened by ioangatop 9 months ago
Labels: documentation

#488 - Fix paper citation

Issue - State: closed - Opened by ioangatop 9 months ago
Labels: documentation

#487 - update docs config links to point to v0.0.2

Pull Request - State: closed - Opened by roman807 9 months ago

#486 - Bump micro version

Pull Request - State: closed - Opened by ioangatop 9 months ago
Labels: bump-version

#485 - Bump eva version

Issue - State: closed - Opened by ioangatop 9 months ago

#484 - Update dependency jsonargparse to v4.29.0

Pull Request - State: closed - Opened by renovate[bot] 9 months ago - 2 comments
Labels: renovate

#483 - Fix `torch` and `jsonargparse` versions

Pull Request - State: closed - Opened by ioangatop 9 months ago
Labels: package-management

#482 - fix config link in docs

Pull Request - State: closed - Opened by roman807 9 months ago

#481 - [BUG] Fix `torch` and `jsonargparse` versions

Issue - State: closed - Opened by ioangatop 9 months ago
Labels: bug, package-management

#480 - Update img shields of README

Pull Request - State: closed - Opened by ioangatop 9 months ago
Labels: documentation

#479 - Update README shields with emojis

Issue - State: closed - Opened by ioangatop 9 months ago
Labels: documentation

#478 - Update the vision dataset return types to `tv_tensors`

Pull Request - State: closed - Opened by ioangatop 9 months ago
Labels: vision

#477 - Update the dataset return types to `tv_tensors`

Issue - State: closed - Opened by ioangatop 9 months ago
Labels: vision

#476 - 459 add camelyon16 slide level task

Pull Request - State: closed - Opened by roman807 9 months ago

#475 - Define slide-level evaluation protocol

Issue - State: closed - Opened by roman807 9 months ago - 1 comment

#474 - Update `README` with paper citation

Pull Request - State: closed - Opened by ioangatop 9 months ago
Labels: documentation

#473 - Add paper link to README

Issue - State: closed - Opened by ioangatop 9 months ago
Labels: documentation

#470 - Added `PANDA` to CLI unit tests

Pull Request - State: closed - Opened by nkaenzig 9 months ago
Labels: tests

#469 - Add CLI unit tests for `PANDA`

Issue - State: closed - Opened by nkaenzig 9 months ago
Labels: tests

#468 - Add `TiffSlide` backend

Pull Request - State: closed - Opened by nkaenzig 9 months ago

#467 - Add `TiffSlide` backend

Issue - State: closed - Opened by nkaenzig 9 months ago
Labels: vision, aggregated-feature

#466 - Add configuration logger

Pull Request - State: closed - Opened by ioangatop 9 months ago
Labels: core, configs

#465 - Update `EmbeddingsWriter` to store tensors as lists

Pull Request - State: closed - Opened by nkaenzig 9 months ago

#464 - Fix issue `EmbeddingsWriter` freeze issue

Issue - State: closed - Opened by nkaenzig 9 months ago
Labels: bug

#463 - fixed panda file paths

Pull Request - State: closed - Opened by roman807 9 months ago

#462 - Embeddingswriter - pass split as metadata key

Issue - State: closed - Opened by roman807 9 months ago

#461 - Refactor embeddings writer

Pull Request - State: closed - Opened by ioangatop 9 months ago
Labels: core

#460 - Refactor `EmbeddingsWriter` class

Issue - State: closed - Opened by ioangatop 9 months ago
Labels: core

#459 - Add Camelyon16 slide-level task

Issue - State: closed - Opened by roman807 9 months ago

#458 - Update actions/checkout digest to a5ac7e5

Pull Request - State: closed - Opened by renovate[bot] 9 months ago
Labels: renovate

#457 - Normalisations and transforms for `int16` image types

Pull Request - State: closed - Opened by ioangatop 9 months ago - 1 comment
Labels: vision, aggregated-feature

#456 - Update WSI foreground segmentation algorithm

Pull Request - State: closed - Opened by nkaenzig 9 months ago

#455 - Improve segmentation algorithm for WSI foreground

Issue - State: closed - Opened by nkaenzig 9 months ago
Labels: aggregated-feature

#454 - updated eva logo

Pull Request - State: closed - Opened by roman807 9 months ago

#453 - Update eva logo

Issue - State: closed - Opened by roman807 9 months ago
Labels: documentation

#452 - Allow to group classes rather than sub-select them

Issue - State: open - Opened by ioangatop 9 months ago
Labels: vision, radiology, aggregated-feature

#451 - Rescale intensity of `int16` data in CT scans

Issue - State: closed - Opened by ioangatop 9 months ago
Labels: vision, aggregated-feature

#450 - Remove total segmentator classification dataset

Pull Request - State: closed - Opened by ioangatop 9 months ago
Labels: vision

#449 - Remove the `TotalSegmentator` classification dataset

Issue - State: closed - Opened by ioangatop 9 months ago
Labels: vision

#448 - Add configuration logger

Issue - State: closed - Opened by ioangatop 9 months ago
Labels: core

#447 - Add per class metrics dice score in `TotalSegmentator2D`

Pull Request - State: closed - Opened by ioangatop 9 months ago
Labels: vision, aggregated-feature

#446 - Move metrics to CPU when using single device

Pull Request - State: closed - Opened by ioangatop 9 months ago
Labels: core

#445 - Add device management for the metrics calculation

Issue - State: closed - Opened by ioangatop 9 months ago
Labels: core

#444 - Add per class metrics dice score in `TotalSegmentator2D`

Issue - State: closed - Opened by ioangatop 9 months ago
Labels: vision, aggregated-feature

#443 - Support int16 training on `TotalSegementator2D`

Pull Request - State: closed - Opened by ioangatop 9 months ago
Labels: vision, radiology, aggregated-feature

#442 - Allow to train with `int16` data

Issue - State: closed - Opened by ioangatop 9 months ago
Labels: vision, aggregated-feature

#441 - Consistent numpy arrays typing

Issue - State: open - Opened by ioangatop 9 months ago
Labels: core

#440 - Improve the mask loading in `TotalSegmentator2D`

Pull Request - State: closed - Opened by ioangatop 9 months ago
Labels: vision, aggregated-feature

#439 - Improve the mask loading in `TotalSegmentator2D`

Pull Request - State: closed - Opened by ioangatop 9 months ago
Labels: vision, aggregated-feature

#438 - Add `Mask2Former` decoder

Issue - State: open - Opened by ioangatop 9 months ago
Labels: vision, aggregated-feature

#436 - Add offline total segmentator configuration

Issue - State: closed - Opened by ioangatop 9 months ago
Labels: vision, aggregated-feature

#430 - Add `PANDA` dataset class

Pull Request - State: closed - Opened by nkaenzig 9 months ago - 1 comment

#427 - Support Breast Cancer Semantic Segmentation (BCSS) dataset

Issue - State: closed - Opened by ioangatop 9 months ago - 1 comment
Labels: vision

#426 - Implement method to retrieve MPP from WSIs

Issue - State: closed - Opened by roman807 9 months ago

#425 - Create a dataset class for `PANDA`

Issue - State: closed - Opened by nkaenzig 9 months ago

#419 - Write unit tests for WSI patch sampler classes

Issue - State: closed - Opened by nkaenzig 9 months ago
Labels: tests

#417 - Improve the mask loading in `TotalSegmentator2D`

Issue - State: closed - Opened by ioangatop 9 months ago
Labels: vision

#402 - [Aggregated Feature] Segmentation downstream evaluation tasks

Issue - State: closed - Opened by ioangatop 10 months ago
Labels: vision, aggregated-feature

#393 - Implement simple baseline sampler for foreground patches

Issue - State: closed - Opened by roman807 10 months ago

#386 - Add support for `CryoNuSeg` Dataset

Issue - State: open - Opened by ioangatop 10 months ago
Labels: vision, dataset

#385 - Create a callback to visualise the segmentation results

Issue - State: closed - Opened by ioangatop 10 months ago
Labels: vision

#375 - Add support for masking to patching

Issue - State: closed - Opened by nkaenzig 10 months ago

#360 - Support slide-level inference

Issue - State: closed - Opened by roman807 10 months ago

#295 - Add support for processors in huggingface wrapper

Issue - State: open - Opened by nkaenzig 11 months ago

#175 - Add `CoNSeP` segmentation Dataset

Issue - State: closed - Opened by ioangatop 12 months ago
Labels: vision, dataset

#167 - Add `Linear` and `Conv2D` decoder for segmentation tasks

Issue - State: closed - Opened by ioangatop 12 months ago
Labels: vision

#100 - Add ABMIL network

Issue - State: closed - Opened by nkaenzig about 1 year ago
Labels: vision

#99 - change "valid" split names to "val"

Pull Request - State: closed - Opened by roman807 about 1 year ago

#98 - align dataset readmes

Pull Request - State: closed - Opened by roman807 about 1 year ago

#97 - add totalsegmentator dataset

Pull Request - State: closed - Opened by roman807 about 1 year ago

#96 - Obtain OpenSSF best practices badge

Issue - State: open - Opened by roman807 about 1 year ago

#95 - Add support to initialise model from function

Pull Request - State: closed - Opened by ioangatop about 1 year ago
Labels: core:model

#94 - Add a model wrapper for functions

Issue - State: closed - Opened by ioangatop about 1 year ago
Labels: core:model

#93 - Create `PatchCamelyon` downstream task

Pull Request - State: closed - Opened by ioangatop about 1 year ago
Labels: vision

#92 - Add setup operations when library is imported

Pull Request - State: closed - Opened by ioangatop about 1 year ago
Labels: core:utils

#91 - Add setup operations when library is imported

Issue - State: closed - Opened by ioangatop about 1 year ago
Labels: core:utils

#90 - Enable omega as yaml configuration parser

Pull Request - State: closed - Opened by ioangatop about 1 year ago
Labels: core:interface

#89 - Add omega as yaml config parser in CLI

Issue - State: closed - Opened by ioangatop about 1 year ago
Labels: core:interface

#88 - Add default multi-class classification metrics

Pull Request - State: closed - Opened by ioangatop about 1 year ago
Labels: core:metrics

#87 - Add default multi-class classification metrics

Issue - State: closed - Opened by ioangatop about 1 year ago
Labels: core:metrics