Ecosyste.ms: Issues

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GitHub / jyyulab/SJARACNe issues and pull requests

#54 - Error when running getActivity_individual()

Issue - State: open - Opened by karlie002 about 2 months ago - 2 comments

#53 - Low p-values (<= 1e-07 ) get rounded to zero

Issue - State: open - Opened by Bullo27 about 2 months ago - 2 comments

#52 - Did not find output with glob pattern : ['TF_run_001.adj']

Issue - State: open - Opened by alistairapoll about 2 months ago - 3 comments

#51 - Did not find output file with glob pattern: ['TF_run_001.adj'].", {})

Issue - State: closed - Opened by FWYX 5 months ago - 1 comment

#50 - Bootstraps terminated by signal: SIGTERM

Issue - State: open - Opened by luyifei111 6 months ago

#49 - Update setup.py

Pull Request - State: closed - Opened by ZebYulon 6 months ago

#48 - Update README.md

Pull Request - State: closed - Opened by ZebYulon 6 months ago

#47 - Update requirements.txt

Pull Request - State: closed - Opened by ZebYulon 6 months ago

#46 - SyntaxError: invalid syntax

Issue - State: closed - Opened by MathildaStigenberg 10 months ago

#44 - Did not find output file with glob pattern: ['TF_run_001.adj'].", {}

Issue - State: closed - Opened by luochx5 over 1 year ago - 1 comment

#42 - i can't assign a path for my tmp file

Issue - State: closed - Opened by li1311139481 almost 2 years ago - 5 comments

#41 - [Errno 13] Permission denied: 'create_consensus_network.py'

Issue - State: open - Opened by albertop210 over 2 years ago - 2 comments

#40 - ValueError: could not convert string to float

Issue - State: open - Opened by SL1993 over 2 years ago - 1 comment

#39 - empty file

Issue - State: closed - Opened by saisaitian over 2 years ago - 2 comments

#38 - Run with error

Issue - State: open - Opened by YiyuCh over 2 years ago - 1 comment

#37 - empty output file

Issue - State: closed - Opened by liu7923 almost 3 years ago - 5 comments

#36 - empty output file

Issue - State: closed - Opened by zjgt almost 3 years ago - 6 comments

#35 - ERROR Exception while running job

Issue - State: closed - Opened by hyosilpro over 3 years ago - 5 comments

#34 - numpy needs more stringency in version

Issue - State: closed - Opened by guillaumecharbonnier over 3 years ago - 1 comment

#33 - cwltool from requirements is not available in conda common channels

Issue - State: closed - Opened by guillaumecharbonnier over 3 years ago - 1 comment

#32 - Python version, has to be 3.6.1?

Issue - State: closed - Opened by jasonchian almost 4 years ago - 1 comment

#31 - Add "ensembl_gene_id" as default identification for nodes

Issue - State: closed - Opened by itsyogeshd almost 4 years ago - 1 comment

#30 - Problem finding sjaracne.exe

Issue - State: closed - Opened by albertoriva about 4 years ago - 2 comments

#29 - "rho" is probably named wrong

Issue - State: closed - Opened by adamdingliang over 4 years ago - 1 comment

#27 - Permission Denied

Issue - State: closed - Opened by RavulaPitt over 4 years ago - 4 comments

#26 - command to install and ru SJARACNe (local)

Issue - State: closed - Opened by ERIGR over 4 years ago - 1 comment

#25 - problem when trying to runSJARACNe

Issue - State: closed - Opened by ERIGR over 4 years ago - 2 comments

#24 - problem to run sjaracne

Issue - State: closed - Opened by ERIGR over 4 years ago - 1 comment

#23 - Add documentation describing sjaracne parameters / suggested settings

Issue - State: closed - Opened by khughitt almost 5 years ago - 1 comment

#22 - is there a way to run this excellent program in windows10 platform.

Issue - State: closed - Opened by guozihuaa almost 5 years ago - 3 comments
Labels: enhancement

#21 - The argument [adjmat_dir] for step [consensus] is required

Issue - State: closed - Opened by adamdingliang about 5 years ago

#20 - Cannot find probe: XXXX in "tmp/XXX/tf.txt" ... ignored

Issue - State: closed - Opened by SherryDong about 5 years ago - 3 comments

#19 - sjaracne.exe not found

Issue - State: closed - Opened by fossbert over 5 years ago - 3 comments

#18 - Add support to specify temp dir

Issue - State: closed - Opened by adamdingliang over 5 years ago - 2 comments
Labels: enhancement

#17 - Fixed problem where name of gene could not have spaces

Pull Request - State: closed - Opened by jimmyv9 over 5 years ago

#16 - Strings with spaces should be allowed as geneSymbol

Issue - State: closed - Opened by adamdingliang over 5 years ago
Labels: bug

#15 - yml file is gone while rerunning cwlexec

Issue - State: closed - Opened by adamdingliang over 5 years ago - 1 comment
Labels: bug

#14 - bwait command failed

Issue - State: closed - Opened by adamdingliang over 5 years ago - 1 comment

#13 - Add a feature to clean up builds in setup.py

Issue - State: open - Opened by adamdingliang over 5 years ago
Labels: enhancement

#12 - Cwl

Pull Request - State: closed - Opened by jimmyv9 over 5 years ago

#11 - Issue: Permission denied

Issue - State: closed - Opened by MingBit over 5 years ago - 4 comments

#10 - Unit tests for SJARACNe python scripts

Pull Request - State: closed - Opened by jimmyv9 over 5 years ago

#9 - igraph-python does not install

Issue - State: closed - Opened by decarlin over 5 years ago - 1 comment

#8 - Add support for specifying DPI tolerance parameter

Issue - State: open - Opened by khughitt almost 6 years ago - 3 comments
Labels: enhancement

#7 - Update get_consensus_network.py to support single-directory adjmat filepaths

Pull Request - State: closed - Opened by khughitt almost 6 years ago - 1 comment

#6 - Update getconsensusnetwork.py to support single-directory adjmat directories

Pull Request - State: closed - Opened by khughitt almost 6 years ago - 2 comments

#5 - Failed to install python-igraph in St. Jude HPC

Issue - State: closed - Opened by adamdingliang almost 6 years ago - 2 comments

#4 - README / dependency clarifications

Pull Request - State: closed - Opened by khughitt almost 6 years ago - 1 comment
Labels: enhancement

#3 - Possible to control memory / thread usage?

Issue - State: closed - Opened by khughitt almost 6 years ago - 4 comments
Labels: enhancement

#2 - No shebang line in generate_pipeline.py

Issue - State: closed - Opened by adamdingliang about 6 years ago - 1 comment

#1 - change -f to -r in pip install

Issue - State: closed - Opened by adamdingliang about 6 years ago