Ecosyste.ms: Issues

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GitHub / jvkersch/tmtools issues and pull requests

#48 - Proposed fix for issue #47

Pull Request - State: open - Opened by alkorolyov-selvita 21 days ago - 1 comment

#46 - How to save aligned structures as .pdb file.

Issue - State: open - Opened by amani-acog 4 months ago - 3 comments

#45 - Use poetry for project management

Issue - State: open - Opened by jvkersch 4 months ago

#44 - Enable ruff

Pull Request - State: closed - Opened by jvkersch 4 months ago

#43 - Add changelog

Issue - State: closed - Opened by jvkersch 4 months ago - 1 comment

#42 - Release version 0.2

Issue - State: closed - Opened by cvigilv 4 months ago - 4 comments

#41 - feat(bindings): expose sequence alignment to `TM_result` object

Pull Request - State: closed - Opened by cvigilv 4 months ago - 2 comments

#40 - DOC: Add a note about testing to README

Pull Request - State: closed - Opened by jvkersch 4 months ago

#39 - feat(helpers): implement structure alignment based on `TM_result`

Pull Request - State: closed - Opened by cvigilv 4 months ago - 5 comments

#38 - feat(bindings): expose RMSD to `TM_result` object

Pull Request - State: closed - Opened by cvigilv 4 months ago - 6 comments

#37 - feat(io): add MMCIF support

Pull Request - State: closed - Opened by cvigilv 4 months ago - 1 comment

#36 - Development help

Issue - State: closed - Opened by cvigilv 4 months ago - 2 comments

#35 - Implement function to translate/rotate protein based on TMResult

Issue - State: closed - Opened by cvigilv 5 months ago - 2 comments

#34 - MMCIF support

Issue - State: closed - Opened by cvigilv 5 months ago - 4 comments

#33 - Expose resulting sequence alignment from TMAlign

Issue - State: closed - Opened by cvigilv 5 months ago - 5 comments

#32 - Implement `ignore_hetero` argument in `get_residue_data`

Pull Request - State: closed - Opened by cvigilv 5 months ago

#31 - DEV: Specify 'needs' in pipeline

Pull Request - State: closed - Opened by jvkersch 6 months ago

#30 - Better error handling/docstrings

Pull Request - State: closed - Opened by jvkersch 7 months ago - 2 comments

#29 - Avoid exiting interpreter directly

Pull Request - State: closed - Opened by jvkersch 7 months ago

#28 - add error checking wrapper to `tm_align` binding function

Pull Request - State: closed - Opened by kamurani 8 months ago - 2 comments

#27 - IPython kernel dies when encountering errors within `.cpp` code

Issue - State: closed - Opened by kamurani 8 months ago - 1 comment

#26 - FIX: Make workflows dispatchable

Pull Request - State: closed - Opened by jvkersch 9 months ago

#25 - DEV: Split up wheel builder action

Pull Request - State: closed - Opened by jvkersch 9 months ago

#24 - Support Python 3.12

Pull Request - State: closed - Opened by jvkersch 9 months ago

#23 - REL: Bump version to 0.1.0

Pull Request - State: closed - Opened by jvkersch 9 months ago

#20 - Binding for residue-residue structural alignment

Issue - State: open - Opened by kamurani 12 months ago - 2 comments

#19 - RMSD not shown tm_align function.

Issue - State: closed - Opened by profdocpizza about 1 year ago - 4 comments

#18 - US-Align Support?

Issue - State: open - Opened by amorehead over 1 year ago - 2 comments

#17 - Automate wheel building

Pull Request - State: closed - Opened by jvkersch over 1 year ago

#16 - Update build-wheels.yml

Pull Request - State: closed - Opened by mbestipa over 1 year ago - 4 comments

#15 - Fix build on Python 3.11

Pull Request - State: closed - Opened by jvkersch over 1 year ago

#14 - Test on Python 3.11

Issue - State: closed - Opened by jvkersch over 1 year ago

#13 - Update PyPI page

Issue - State: closed - Opened by jvkersch over 1 year ago - 1 comment

#12 - Move away from setup.py

Issue - State: closed - Opened by jvkersch over 1 year ago - 1 comment

#11 - DEV: Build all platforms.

Pull Request - State: closed - Opened by jvkersch over 1 year ago

#10 - Issues with installing package with newer version of python

Issue - State: closed - Opened by mbestipa over 1 year ago - 3 comments

#9 - Which one is the target protein, and what is the TM-score?

Issue - State: closed - Opened by smiles724 almost 2 years ago - 2 comments

#8 - Remove biopython dependency

Pull Request - State: closed - Opened by jvkersch about 2 years ago

#7 - Remove biopython as a core dependency

Issue - State: closed - Opened by jvkersch almost 3 years ago

#6 - Tweak build process

Pull Request - State: closed - Opened by jvkersch almost 3 years ago

#5 - Remove ssize_t

Pull Request - State: closed - Opened by jvkersch almost 3 years ago

#4 - DEV: Build wheels

Pull Request - State: closed - Opened by jvkersch almost 3 years ago

#3 - MAINT: Enable Windows build

Pull Request - State: closed - Opened by jvkersch almost 3 years ago

#2 - Fix Windows build

Issue - State: closed - Opened by jvkersch about 3 years ago

#1 - MAINT: Testing infrastructure

Pull Request - State: closed - Opened by jvkersch about 3 years ago