juglab/n2v issues and pull requests

#154 - Running N2V prediction on a GPU cluster fails

Issue - State: open - Opened by Eddymorphling 7 months ago

#153 - "weights_best.h5" is not working

Issue - State: open - Opened by farukalamai 8 months ago - 4 comments

#152 - save_tiff_imagej_compatible('pred_train.tif', pred_train, axes='YX')

Issue - State: open - Opened by farukalamai 8 months ago - 3 comments

#151 - N2V for large datasets

Issue - State: open - Opened by GregorSkoul 8 months ago - 1 comment

#150 - the filepath provided must end in `.weights.h5`

Issue - State: open - Opened by schienstockd 8 months ago - 2 comments

#149 - Poor performance

Issue - State: open - Opened by yashkhurana24 11 months ago - 5 comments

#148 - How to employ multiple GPUs during training

Issue - State: open - Opened by DennisDannecker 12 months ago - 1 comment

#147 - Peculiar behavior of N2V2 prediction

Issue - State: open - Opened by somas193 about 1 year ago - 6 comments

#146 - Remove additional dimension in single-patch extraction.

Pull Request - State: closed - Opened by tibuch about 1 year ago - 7 comments

#145 - Wrong shape in training data generation

Issue - State: closed - Opened by tibuch about 1 year ago

#144 - Updating N2V to N2V2 settings

Issue - State: closed - Opened by bmburkel over 1 year ago - 4 comments

#143 - tensor dimension input error when running 3D N2V

Issue - State: open - Opened by ywu130 over 1 year ago - 7 comments

#142 - How to run through the code

Issue - State: closed - Opened by tianshukai99 over 1 year ago - 2 comments

#141 - train

Issue - State: closed - Opened by tianshukai99 over 1 year ago - 2 comments

#140 - N2V Fiji crashes

Issue - State: closed - Opened by Eddymorphling over 1 year ago - 2 comments

#139 - Config should not need X

Issue - State: closed - Opened by msseibel over 1 year ago - 2 comments

#138 - fix bioimageio ci error on windows

Pull Request - State: closed - Opened by veegalinova over 1 year ago

#137 - Update bioimageio model export

Pull Request - State: closed - Opened by veegalinova over 1 year ago - 2 comments

#136 - Multi-channel tiff (YXC) file denoising problem

Issue - State: closed - Opened by honghongfang over 1 year ago - 7 comments

#135 - error in predicting model

Issue - State: closed - Opened by MHMoazezian over 1 year ago - 2 comments

#134 - make N2V_DataGenerator extensible to more file formats

Pull Request - State: closed - Opened by thawn almost 2 years ago - 1 comment

#133 - M1 Mac: Graph execution error on 3D data

Issue - State: closed - Opened by thawn almost 2 years ago - 4 comments

#132 - support bmp images

Pull Request - State: closed - Opened by siemdejong about 2 years ago

#131 - update Readme

Pull Request - State: closed - Opened by jdeschamps about 2 years ago - 1 comment

#130 - FIxing exporting model weight

Pull Request - State: closed - Opened by jdeschamps about 2 years ago - 1 comment

#129 - Add 3D support for N2V2

Issue - State: open - Opened by tibuch about 2 years ago
Labels: enhancement

#128 - Model export does not work for N2V2

Issue - State: closed - Opened by tibuch about 2 years ago - 1 comment
Labels: bug

#127 - Update requirements

Pull Request - State: closed - Opened by jdeschamps about 2 years ago - 10 comments

#126 - Include N2V2 into README.md

Pull Request - State: closed - Opened by tibuch about 2 years ago - 4 comments

#125 - Verbosity management

Issue - State: open - Opened by patquem about 2 years ago
Labels: enhancement, good first issue

#124 - implement mean and median masking schemes

Pull Request - State: closed - Opened by anbn over 2 years ago

#123 - Check license / copyright holders

Issue - State: closed - Opened by haesleinhuepf over 2 years ago - 1 comment

#122 - The direction of the 3D data test result is inconsistent with the original data

Issue - State: closed - Opened by Emmally6 over 2 years ago - 4 comments

#121 - Bp skip

Pull Request - State: closed - Opened by tibuch over 2 years ago

#120 - Issue when training

Issue - State: closed - Opened by farazahmeds over 2 years ago - 1 comment

#119 - Issue with XLA devices

Issue - State: open - Opened by snoreis over 2 years ago - 1 comment

#118 - 2D RGB data not accessible anymore: 502 Bad Gateway

Issue - State: closed - Opened by chloeskt almost 3 years ago - 5 comments

#117 - kernel dies during prediction after "allocation of system memory exceeds 10%"

Issue - State: open - Opened by Mrc010 about 3 years ago

#116 - Prediction: allocation exceeds 10% of system memory

Issue - State: closed - Opened by Mrc010 about 3 years ago

#115 - Examples fails due to auth login data

Issue - State: closed - Opened by ctr26 about 3 years ago - 4 comments

#114 - making patch size smaller in the given 3D example notebook lead to nan loss

Issue - State: closed - Opened by tonyPan123 about 3 years ago - 2 comments

#113 - Fix import

Pull Request - State: closed - Opened by tibuch about 3 years ago

#112 - 'ReduceLROnPlateau' object has no attribute '_implements_predict_batch_hooks'

Issue - State: closed - Opened by joaomamede about 3 years ago - 2 comments

#111 - Tensorflow-gpu version 2.4.1 is not compatile with Windows

Issue - State: closed - Opened by nunopimpaomartins over 3 years ago - 12 comments

#110 - Upgrade to TensorFlow 2

Pull Request - State: closed - Opened by tibuch over 3 years ago

#109 - Fiji error when runnnig n2v-sem demo model with bioimage.io

Issue - State: closed - Opened by maweigert over 3 years ago - 3 comments

#108 - GPU training doesn't work?

Issue - State: open - Opened by yongshuo-Z over 3 years ago - 5 comments

#107 - Unable to get sample notebooks to run

Issue - State: closed - Opened by mmroden over 3 years ago - 5 comments

#106 - Issue with creating the network model from StructN2V

Issue - State: closed - Opened by NikithaSiddappaRamesh over 3 years ago - 2 comments

#105 - denoising 1D data

Issue - State: closed - Opened by psteinb almost 4 years ago - 2 comments

#104 - Problem with config

Issue - State: closed - Opened by LeGabriel about 4 years ago - 5 comments

#103 - [Feature request] Saving model checkpoints during training

Issue - State: open - Opened by nicesetup about 4 years ago - 2 comments

#102 - MemoryError when running denoising2D_RGB example using my own data

Issue - State: closed - Opened by fabulousfeng about 4 years ago - 2 comments

#101 - Question about loss function

Issue - State: closed - Opened by jonathanventura about 4 years ago - 2 comments

#100 - "Unknown: Failed to get convolution algorithm." error and how to solve it

Issue - State: open - Opened by VolkerH about 4 years ago - 3 comments

#99 - N2V in Jupyter Notebook and GPU Memory Issue

Issue - State: open - Opened by citypalmtree over 4 years ago - 1 comment

#98 - n2v example notebooks throw errors

Issue - State: open - Opened by Histo23 over 4 years ago - 1 comment

#97 - Understanding a Poor Result

Issue - State: closed - Opened by JohnCraigPublic over 4 years ago - 8 comments

#96 - Does it make sense: PSNR between original and de-noised image?

Issue - State: closed - Opened by JohnCraigPublic over 4 years ago - 2 comments

#95 - Structured N2V; 'float' object has no attribute 'item' in training

Issue - State: closed - Opened by citypalmtree over 4 years ago - 4 comments

#94 - Suppress noise early or later in image processing?

Issue - State: closed - Opened by JohnCraigPublic over 4 years ago - 2 comments

#93 - history = model.train() won't work due to dtype float 32

Issue - State: closed - Opened by citypalmtree over 4 years ago - 2 comments

#92 - A Simple Question on Training Data

Issue - State: closed - Opened by JohnCraigPublic over 4 years ago - 3 comments

#91 - 16-bits-per-pixel images

Issue - State: closed - Opened by JohnCraigPublic over 4 years ago - 2 comments

#90 - RAM requirement for 4D dataset

Issue - State: closed - Opened by ChengYJack over 4 years ago - 2 comments

#89 - Missing plt.show() in denoising2D_SEM/02_prediction.ipynb

Issue - State: closed - Opened by Volko1 over 4 years ago - 1 comment

#88 - N2V for TF2 ?

Issue - State: closed - Opened by JohnCraigPublic over 4 years ago - 5 comments
Labels: enhancement

#87 - Model does not exist or cannot be loaded

Issue - State: closed - Opened by XarlesSta over 4 years ago - 1 comment

#86 - TF-GPU in fiji but CPU is max out

Issue - State: closed - Opened by XarlesSta over 4 years ago - 2 comments

#85 - Add init.py and fix import.

Pull Request - State: closed - Opened by tibuch over 4 years ago

#84 - Import fix

Pull Request - State: closed - Opened by tibuch over 4 years ago

#83 - Improve documentation

Pull Request - State: open - Opened by tibuch over 4 years ago

#82 - Stale CSBDeep requirements

Issue - State: closed - Opened by uschmidt83 over 4 years ago - 1 comment

#81 - Small fixes

Pull Request - State: closed - Opened by tibuch over 4 years ago

#80 - Gaby neubias

Pull Request - State: closed - Opened by turekg over 4 years ago - 30 comments

#79 - One U-Net per Channel Option

Pull Request - State: closed - Opened by tibuch over 4 years ago - 8 comments
Labels: enhancement

#78 - why does it work so well (theoretical arguments)?

Issue - State: closed - Opened by codingS3b over 4 years ago - 5 comments

#77 - add structN2V ability to method w membrane example

Pull Request - State: closed - Opened by colemanbroad over 4 years ago - 1 comment

#76 - Issue 73

Pull Request - State: closed - Opened by turekg over 4 years ago - 2 comments

#75 - Alex krull patch clipping

Pull Request - State: closed - Opened by alex-krull over 4 years ago

#74 - Clipping is missing in noisy image synthesis

Issue - State: closed - Opened by guochengqian over 4 years ago - 2 comments

#73 - N2V Patch Generation

Issue - State: closed - Opened by tibuch over 4 years ago - 3 comments
Labels: bug

#72 - solution to Issue 70 & new options

Pull Request - State: open - Opened by trasse over 4 years ago - 2 comments

#71 - Modelzoo Export

Issue - State: closed - Opened by tibuch over 4 years ago - 3 comments

#70 - N2V_DataGenerator error in 3D making patches

Issue - State: closed - Opened by trasse over 4 years ago - 3 comments

#69 - Multi gpu training

Pull Request - State: open - Opened by psteinb almost 5 years ago - 6 comments

#68 - Issue with plotting

Issue - State: closed - Opened by uschmidt83 almost 5 years ago - 1 comment

#67 - n_tiles must be updated after line 379 to reflect new_axes

Issue - State: closed - Opened by uschmidt83 almost 5 years ago - 1 comment

#66 - Improve Jupyter-Notebook Documentation

Issue - State: open - Opened by tibuch almost 5 years ago - 1 comment
Labels: enhancement

#65 - output is same as input, is it something wrong with input format?

Issue - State: closed - Opened by Tejuwi almost 5 years ago - 2 comments

#64 - Fix Doc-String

Issue - State: closed - Opened by tibuch almost 5 years ago

#63 - Remove Version Checks

Issue - State: closed - Opened by tibuch almost 5 years ago

#62 - Noise including crumple and creases in images

Issue - State: closed - Opened by harnitbakshi almost 5 years ago - 1 comment

#61 - notebook won't open from GCP instance

Issue - State: closed - Opened by ngreenwald about 5 years ago - 1 comment

#60 - validity of n2v_neighborhood_radius parameter is unchecked

Issue - State: closed - Opened by mangalp about 5 years ago - 1 comment
Labels: enhancement, good first issue

#59 - strange results with out-of-sample prediction

Issue - State: closed - Opened by benmuhlmann about 5 years ago - 1 comment

#58 - _predict_mean_and_scale

Issue - State: closed - Opened by cyndixxxxx about 5 years ago

#57 - Cast prediction input images to float32 if necessary

Pull Request - State: closed - Opened by tibuch about 5 years ago

#56 - Fix issue45

Pull Request - State: closed - Opened by tibuch about 5 years ago

#55 - Fix issue42

Pull Request - State: closed - Opened by tibuch about 5 years ago

GitHub / juglab/n2v issues and pull requests