Ecosyste.ms: Issues

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GitHub / juglab/DenoiSeg issues and pull requests

#51 - Threshold TypingError in example notebook

Issue - State: open - Opened by lezra1 2 months ago - 2 comments

#49 - Numpy1.15

Pull Request - State: closed - Opened by jdeschamps about 1 year ago

#48 - Error upon running Mouse_Organoid_Cells_CBG_Example.ipynb

Issue - State: closed - Opened by rhoitink about 1 year ago - 2 comments

#47 - 3d example

Pull Request - State: closed - Opened by jdeschamps almost 2 years ago

#46 - augmentation compatible with channel

Pull Request - State: closed - Opened by jdeschamps almost 2 years ago

#45 - One-hot encoding not compatible with channels

Issue - State: closed - Opened by jdeschamps almost 2 years ago - 1 comment

#43 - First epoch takes too long

Issue - State: open - Opened by jdeschamps almost 3 years ago

#42 - Segmentation board unavailable

Issue - State: open - Opened by jdeschamps almost 3 years ago

#41 - Dataset size vs bactch x steps / epoch

Issue - State: open - Opened by jdeschamps almost 3 years ago

#40 - TF2

Pull Request - State: closed - Opened by jdeschamps almost 3 years ago - 3 comments

#39 - Masking per pixel instead of per patch

Issue - State: open - Opened by jdeschamps almost 3 years ago - 1 comment

#38 - Add support for multi-channel inputs

Pull Request - State: closed - Opened by funkey almost 3 years ago

#37 - Incompatible keras and h5py versions

Issue - State: open - Opened by funkey almost 3 years ago

#36 - Conda install instructions seem to require conda-forge

Issue - State: closed - Opened by funkey almost 3 years ago

#35 - Transfer Learning

Issue - State: closed - Opened by hylin-work about 3 years ago - 1 comment

#34 - Add notebooks with improved quality

Pull Request - State: closed - Opened by mangalp over 4 years ago - 4 comments

#33 - Update page

Pull Request - State: closed - Opened by tibuch over 4 years ago

#32 - Refactoring

Pull Request - State: closed - Opened by tibuch over 4 years ago

#31 - Mouse notebook

Pull Request - State: closed - Opened by mangalp over 4 years ago - 1 comment

#30 - Modified DSB notebook and added Flywing notebook

Pull Request - State: closed - Opened by mangalp over 4 years ago - 2 comments

#29 - Update notebook to generate qualitative results

Pull Request - State: closed - Opened by mangalp over 4 years ago - 1 comment

#28 - Upload full denoising table for wiki

Pull Request - State: closed - Opened by mangalp over 4 years ago

#27 - Supplementary

Pull Request - State: closed - Opened by mangalp over 4 years ago

#26 - Refactor figure notebooks

Pull Request - State: closed - Opened by tibuch over 4 years ago - 1 comment

#25 - Update figures

Pull Request - State: closed - Opened by tibuch over 4 years ago

#24 - Add qualitative figure notebook

Pull Request - State: closed - Opened by tibuch over 4 years ago

#23 - Add P_i to x-axis label

Pull Request - State: closed - Opened by tibuch over 4 years ago

#22 - Updated abstract

Pull Request - State: closed - Opened by mangalp over 4 years ago

#21 - Denoising quantification notebook

Pull Request - State: closed - Opened by mangalp over 4 years ago

#20 - Mansucript Figure 3

Pull Request - State: closed - Opened by tibuch over 4 years ago

#19 - Mansucript fig alpha scheduling

Pull Request - State: closed - Opened by tibuch over 4 years ago

#18 - Add figure notebooks for DSB n20

Pull Request - State: closed - Opened by tibuch over 4 years ago

#17 - Add seg-denoise-ratio monitor

Pull Request - State: closed - Opened by tibuch over 4 years ago

#16 - Alpha scheduling

Pull Request - State: closed - Opened by tibuch over 4 years ago

#15 - Add notebooks for data preparartion of flywing and liver datasets

Pull Request - State: closed - Opened by mangalp over 4 years ago

#14 - Add val-seg-loss monitoring evaluation notebook

Pull Request - State: closed - Opened by tibuch over 4 years ago

#13 - Add DSB n0 manuscript figure plots

Pull Request - State: closed - Opened by tibuch over 4 years ago

#12 - Monitor seg loss

Pull Request - State: closed - Opened by tibuch over 4 years ago

#11 - Manuscript-Figures: DSB n10

Pull Request - State: closed - Opened by tibuch over 4 years ago

#10 - Notebook

Pull Request - State: closed - Opened by tibuch over 4 years ago

#9 - Change loss to: (1 - weight) * seg + weight * denoise

Pull Request - State: closed - Opened by tibuch over 4 years ago

#8 - Add weighted denoising evaluation notebook

Pull Request - State: closed - Opened by tibuch over 4 years ago

#7 - Alpha weighted loss

Pull Request - State: closed - Opened by mangalp over 4 years ago

#6 - Save scores on validation data

Pull Request - State: closed - Opened by mangalp over 4 years ago

#5 - Computing and saving scores on validation data

Pull Request - State: closed - Opened by mangalp over 4 years ago

#4 - Simple Evaluation Notebooks

Pull Request - State: closed - Opened by tibuch over 4 years ago

#3 - Remove early stopping

Pull Request - State: closed - Opened by tibuch over 4 years ago

#2 - Add SEG score optimized with AP-Threshold

Pull Request - State: closed - Opened by tibuch over 4 years ago

#1 - Add Joint-Loss

Pull Request - State: closed - Opened by tibuch over 4 years ago