Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / jtleek/sva-devel issues and pull requests

#62 - ComBat-met added

Pull Request - State: open - Opened by JmWangBio 4 months ago

#62 - ComBat-met added

Pull Request - State: open - Opened by JmWangBio 4 months ago

#61 - Potential issue with sva_network

Issue - State: open - Opened by s-a-nersisyan 7 months ago

#61 - Potential issue with sva_network

Issue - State: open - Opened by s-a-nersisyan 7 months ago

#59 - combat for epic array data

Issue - State: open - Opened by bioinfonext over 1 year ago

#59 - combat for epic array data

Issue - State: open - Opened by bioinfonext over 1 year ago

#58 - Update ComBat.R

Pull Request - State: open - Opened by elies-ramon over 1 year ago - 3 comments

#58 - Update ComBat.R

Pull Request - State: open - Opened by elies-ramon over 1 year ago - 3 comments

#57 - What to do when n.sv is large

Issue - State: open - Opened by bhallmar almost 2 years ago

#57 - What to do when n.sv is large

Issue - State: open - Opened by bhallmar almost 2 years ago

#55 - Should the data be scaled before running Combat?

Issue - State: open - Opened by lincj1994 over 2 years ago - 2 comments

#55 - Should the data be scaled before running Combat?

Issue - State: open - Opened by lincj1994 over 2 years ago - 2 comments

#54 - Runtime of Combat

Issue - State: open - Opened by WarrenSu2022 over 2 years ago - 2 comments

#54 - Runtime of Combat

Issue - State: open - Opened by WarrenSu2022 over 2 years ago - 2 comments

#52 - Combat returns negative values.

Issue - State: closed - Opened by lincj1994 over 2 years ago - 3 comments

#52 - Combat returns negative values.

Issue - State: closed - Opened by lincj1994 over 2 years ago - 3 comments

#51 - Can you add the parameter of ref.batch in ComBat-Seq?

Issue - State: closed - Opened by lincj1994 over 2 years ago - 5 comments

#51 - Can you add the parameter of ref.batch in ComBat-Seq?

Issue - State: closed - Opened by lincj1994 over 2 years ago - 5 comments

#50 - fix spacing issues

Pull Request - State: closed - Opened by schifferl almost 3 years ago

#50 - fix spacing issues

Pull Request - State: closed - Opened by schifferl almost 3 years ago

#49 - Combat-seq in two batches of RNA-seq with different reference genomes.

Issue - State: closed - Opened by lincj1994 almost 3 years ago - 1 comment

#49 - Combat-seq in two batches of RNA-seq with different reference genomes.

Issue - State: closed - Opened by lincj1994 almost 3 years ago - 1 comment

#48 - Speed up match_quantiles function for ComBat_seq functon

Pull Request - State: open - Opened by lrf2019 over 3 years ago

#48 - Speed up match_quantiles function for ComBat_seq functon

Pull Request - State: open - Opened by lrf2019 over 3 years ago

#45 - Error in `return()` call in `fsva()`.

Issue - State: open - Opened by rorynolan about 4 years ago

#45 - Error in `return()` call in `fsva()`.

Issue - State: open - Opened by rorynolan about 4 years ago

#43 - sva Vignettes example qValues vs qValuesSv

Issue - State: open - Opened by arkyl over 4 years ago

#43 - sva Vignettes example qValues vs qValuesSv

Issue - State: open - Opened by arkyl over 4 years ago

#42 - Error in while (change > conv) { : missing value where TRUE/FALSE needed

Issue - State: open - Opened by huangl07 over 4 years ago - 11 comments

#42 - Error in while (change > conv) { : missing value where TRUE/FALSE needed

Issue - State: open - Opened by huangl07 over 4 years ago - 11 comments

#41 - update documentation for sva_network

Pull Request - State: closed - Opened by princyparsana over 4 years ago

#41 - update documentation for sva_network

Pull Request - State: closed - Opened by princyparsana over 4 years ago

#40 - combat-seq input

Issue - State: closed - Opened by saicharanp18 almost 5 years ago - 1 comment

#40 - combat-seq input

Issue - State: closed - Opened by saicharanp18 almost 5 years ago - 1 comment

#39 - Adding combat-seq to sva

Pull Request - State: closed - Opened by zhangyuqing almost 5 years ago - 5 comments

#39 - Adding combat-seq to sva

Pull Request - State: closed - Opened by zhangyuqing almost 5 years ago - 5 comments

#37 - Combat returns NaN

Issue - State: open - Opened by vkorobeynyk over 5 years ago - 6 comments

#37 - Combat returns NaN

Issue - State: open - Opened by vkorobeynyk over 5 years ago - 6 comments

#36 - Suggested clarification of contrasts matrix in vignette

Issue - State: open - Opened by lefeverde almost 6 years ago

#36 - Suggested clarification of contrasts matrix in vignette

Issue - State: open - Opened by lefeverde almost 6 years ago

#34 - f.pvalue function gives absurd results on zero-variance rows

Issue - State: open - Opened by DarwinAwardWinner over 6 years ago - 2 comments

#34 - f.pvalue function gives absurd results on zero-variance rows

Issue - State: open - Opened by DarwinAwardWinner over 6 years ago - 2 comments

#33 - When plotting ComBat prior.plots, save the original state of the graphical parameters

Pull Request - State: closed - Opened by dfjenkins3 about 7 years ago - 2 comments

#33 - When plotting ComBat prior.plots, save the original state of the graphical parameters

Pull Request - State: closed - Opened by dfjenkins3 about 7 years ago - 2 comments

#32 - Update ComBat.R

Pull Request - State: closed - Opened by kasperdanielhansen about 7 years ago - 2 comments

#32 - Update ComBat.R

Pull Request - State: closed - Opened by kasperdanielhansen about 7 years ago - 2 comments

#31 - Some small changes

Pull Request - State: closed - Opened by cafletezbrant about 7 years ago

#31 - Some small changes

Pull Request - State: closed - Opened by cafletezbrant about 7 years ago

#30 - Added spacing to messages

Pull Request - State: closed - Opened by Shians about 7 years ago - 2 comments

#30 - Added spacing to messages

Pull Request - State: closed - Opened by Shians about 7 years ago - 2 comments

#29 - Minor fix to absent spaces in messages

Pull Request - State: closed - Opened by oganm about 7 years ago - 1 comment

#29 - Minor fix to absent spaces in messages

Pull Request - State: closed - Opened by oganm about 7 years ago - 1 comment

#28 - Improve consistency among message, warnings, and errors

Pull Request - State: open - Opened by DarwinAwardWinner about 7 years ago - 1 comment

#28 - Improve consistency among message, warnings, and errors

Pull Request - State: open - Opened by DarwinAwardWinner about 7 years ago - 1 comment

#27 - Error in density.default

Issue - State: open - Opened by royfrancis over 7 years ago - 6 comments

#27 - Error in density.default

Issue - State: open - Opened by royfrancis over 7 years ago - 6 comments

#26 - Fixed the bug from a month ago

Pull Request - State: closed - Opened by cafletezbrant over 7 years ago

#26 - Fixed the bug from a month ago

Pull Request - State: closed - Opened by cafletezbrant over 7 years ago

#25 - Fixes for edge cases of n.sv <= 1

Pull Request - State: closed - Opened by DarwinAwardWinner over 7 years ago - 1 comment

#25 - Fixes for edge cases of n.sv <= 1

Pull Request - State: closed - Opened by DarwinAwardWinner over 7 years ago - 1 comment

#24 - ComBat fails with updated ComBat.R

Issue - State: open - Opened by cafletezbrant over 7 years ago - 4 comments

#24 - ComBat fails with updated ComBat.R

Issue - State: open - Opened by cafletezbrant over 7 years ago - 4 comments

#23 - Edits to ComBat

Pull Request - State: closed - Opened by kasperdanielhansen over 7 years ago

#23 - Edits to ComBat

Pull Request - State: closed - Opened by kasperdanielhansen over 7 years ago

#22 - removing files commited by mistake

Pull Request - State: closed - Opened by kasperdanielhansen over 7 years ago - 3 comments

#22 - removing files commited by mistake

Pull Request - State: closed - Opened by kasperdanielhansen over 7 years ago - 3 comments

#21 - Fix issues in ComBat prior plotting code

Pull Request - State: closed - Opened by DarwinAwardWinner over 7 years ago - 1 comment

#21 - Fix issues in ComBat prior plotting code

Pull Request - State: closed - Opened by DarwinAwardWinner over 7 years ago - 1 comment

#20 - Performing ComBat without standardizing data?

Issue - State: closed - Opened by jakeyeung over 7 years ago - 2 comments

#20 - Performing ComBat without standardizing data?

Issue - State: closed - Opened by jakeyeung over 7 years ago - 2 comments

#19 - X and Y axes for ComBat QQ plots are not consistent

Issue - State: closed - Opened by DarwinAwardWinner almost 8 years ago

#19 - X and Y axes for ComBat QQ plots are not consistent

Issue - State: closed - Opened by DarwinAwardWinner almost 8 years ago

#18 - remove B for irwsva.build

Pull Request - State: open - Opened by yufree almost 8 years ago

#18 - remove B for irwsva.build

Pull Request - State: open - Opened by yufree almost 8 years ago

#17 - perhaps I should turn off "(add-hook 'before-save-hook 'delete-traili…

Pull Request - State: open - Opened by abelew almost 8 years ago

#17 - perhaps I should turn off "(add-hook 'before-save-hook 'delete-traili…

Pull Request - State: open - Opened by abelew almost 8 years ago

#16 - Add BiocParallel support for ComBat

Pull Request - State: closed - Opened by DarwinAwardWinner almost 8 years ago - 3 comments

#16 - Add BiocParallel support for ComBat

Pull Request - State: closed - Opened by DarwinAwardWinner almost 8 years ago - 3 comments

#15 - adding degradation correction

Pull Request - State: closed - Opened by andrewejaffe about 8 years ago

#15 - adding degradation correction

Pull Request - State: closed - Opened by andrewejaffe about 8 years ago

#13 - Exclude rows with no variance from batch adjustment

Pull Request - State: open - Opened by khughitt over 8 years ago - 3 comments

#13 - Exclude rows with no variance from batch adjustment

Pull Request - State: open - Opened by khughitt over 8 years ago - 3 comments