Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / jtamames/SqueezeMeta issues and pull requests
#662 - Error in Step4
Issue -
State: closed - Opened by liuyinan19922 over 1 year ago
- 2 comments
#661 - SqueezeMeta Step 1 Error: Failing in Megahit Assembly
Issue -
State: closed - Opened by Ravi-WSU over 1 year ago
- 10 comments
#660 - Abundance plots
Issue -
State: closed - Opened by phlienhart over 1 year ago
- 1 comment
#659 - Error occurs when reading inputs
Issue -
State: closed - Opened by lisiruisusan over 1 year ago
- 2 comments
#658 - External database
Issue -
State: closed - Opened by lisiruisusan over 1 year ago
- 26 comments
#657 - Error: plotFunctions with metadata_groups parameter
Issue -
State: closed - Opened by flsaravia over 1 year ago
- 1 comment
#656 - A binning issue
Issue -
State: closed - Opened by blaizereal over 1 year ago
- 12 comments
#655 - Remove outliers when plotting nMDS
Issue -
State: closed - Opened by pstrud over 1 year ago
- 1 comment
#654 - Illegal division by zero
Issue -
State: closed - Opened by blaizereal over 1 year ago
- 22 comments
#653 - Query regarding TPM calculation of KO
Issue -
State: closed - Opened by drbmanna over 1 year ago
- 5 comments
#652 - SQMlite coding error
Issue -
State: closed - Opened by phlienhart over 1 year ago
- 13 comments
#651 - How to specify memory and core parameter in command line?
Issue -
State: closed - Opened by kittyshady over 1 year ago
- 3 comments
#650 - 1.6.2
Pull Request -
State: closed - Opened by fpusan over 1 year ago
#649 - SQM Tools 1.6.0 compatability with sqm_longreads.pl?
Issue -
State: closed - Opened by mscarbor over 1 year ago
- 2 comments
#648 - SqueezeMeta Takes almost One day at STEP 4
Issue -
State: closed - Opened by Michaelijesse over 1 year ago
- 3 comments
#647 - SQMtools version and numpy
Issue -
State: closed - Opened by HannahBenisty over 1 year ago
- 3 comments
#646 - combining tables of bins from unique folders
Issue -
State: closed - Opened by croth204 over 1 year ago
- 5 comments
#645 - Stuck at "solving enviroment"
Issue -
State: closed - Opened by msanchezr99 over 1 year ago
- 5 comments
#644 - SQMtools: loadSQM Error
Issue -
State: closed - Opened by megberryman over 1 year ago
- 12 comments
#643 - Error at step 04.rundiamond.pl
Issue -
State: closed - Opened by jahid10 over 1 year ago
- 7 comments
#642 - Two -miniden cut-off for same Run
Issue -
State: closed - Opened by drbmanna over 1 year ago
- 2 comments
#641 - Error in subsetORFs
Issue -
State: closed - Opened by priya-decodeage over 1 year ago
- 1 comment
#640 - TPM and RPKM calculation inconsistent
Issue -
State: closed - Opened by mkariush over 1 year ago
- 4 comments
#639 - Bin TPM
Issue -
State: closed - Opened by sheaster over 1 year ago
- 4 comments
#638 - Conda recipe conflict - Perl version and dependency conflicts
Issue -
State: closed - Opened by MicroSeq over 1 year ago
- 6 comments
#637 - Stopping in STEP10: Error: No input read files were valid
Issue -
State: closed - Opened by luciamartinf over 1 year ago
- 2 comments
#636 - error at step 4 rundiamond.pl
Issue -
State: closed - Opened by jahid10 over 1 year ago
- 2 comments
#635 - GTDB with SqueezeMeta
Issue -
State: closed - Opened by mscarbor over 1 year ago
- 8 comments
#634 - Unknown option 'restart' when restarting a step
Issue -
State: closed - Opened by jahid10 over 1 year ago
- 2 comments
#633 - re-start with added options
Issue -
State: closed - Opened by spongebob22 over 1 year ago
- 7 comments
#632 - Stats on reads
Issue -
State: closed - Opened by analopezlopez over 1 year ago
- 2 comments
#631 - doublepass post completion
Issue -
State: closed - Opened by sheaster over 1 year ago
- 5 comments
#630 - Can I resume a sqm_longreads.pl run?
Issue -
State: closed - Opened by jllavin77 over 1 year ago
- 2 comments
#629 - Issue at Diamond FIle splitting and LCA
Issue -
State: closed - Opened by vmevada102 over 1 year ago
- 5 comments
#628 - Getting error in running Squeezemeta
Issue -
State: closed - Opened by vmevada102 over 1 year ago
- 4 comments
#627 - error in loadSQM
Issue -
State: closed - Opened by Nykolazzo72 over 1 year ago
- 6 comments
#626 - Running flye on fasta.gz
Issue -
State: closed - Opened by megberryman over 1 year ago
- 5 comments
#625 - Having zero variances in the metabat2 depth file leads to less bins
Issue -
State: closed - Opened by fpusan over 1 year ago
- 1 comment
#624 - Argument checking in SqueezeMeta.pl would prevent the use of custom assemblers?
Issue -
State: closed - Opened by fpusan over 1 year ago
- 1 comment
#623 - How to run run sqm_hmm_reads.pl for fastq?
Issue -
State: closed - Opened by luozhy88 over 1 year ago
- 2 comments
#622 - mamba install not working
Issue -
State: closed - Opened by angelovangel over 1 year ago
- 2 comments
#621 - KEGG databse version
Issue -
State: closed - Opened by fconstancias over 1 year ago
- 1 comment
#620 - anvi-load-sqm.py : process stops midway and does not create the PROFILES.db
Issue -
State: closed - Opened by Sneha-bioinfo over 1 year ago
- 5 comments
Labels: sqm2anvio
#619 - run sqm_hmm_reads.pl error!
Issue -
State: closed - Opened by luozhy88 over 1 year ago
- 10 comments
#618 - minimum contig length can affect memory requirements?
Issue -
State: closed - Opened by Lafmas over 1 year ago
- 7 comments
#617 - Problem with loadSQM in local machine
Issue -
State: closed - Opened by lokyimandy over 1 year ago
- 6 comments
#616 - pip install?
Issue -
State: closed - Opened by AlexandreThibodeauUdM over 1 year ago
- 1 comment
#615 - CD-HIT taking too long when running in merged mode. Is it as expected?
Issue -
State: closed - Opened by auroralabastida over 1 year ago
- 6 comments
#614 - Analysing multiple metagenomes individually made into contigs
Issue -
State: closed - Opened by AlexandreThibodeauUdM over 1 year ago
- 3 comments
#613 - ways to reduce contamination from a particular taxon
Issue -
State: closed - Opened by afsanarupa over 1 year ago
- 4 comments
#612 - Error at assembly with canu
Issue -
State: closed - Opened by pedres over 1 year ago
- 6 comments
#611 - Advice on rarefying data
Issue -
State: closed - Opened by mradz19 over 1 year ago
- 2 comments
#610 - Problem with database download
Issue -
State: closed - Opened by lokyimandy over 1 year ago
- 7 comments
#609 - option parser issue
Issue -
State: open - Opened by moritzbuck over 1 year ago
- 1 comment
Labels: enhancement
#608 - what is the meaning of percentage in case of subsetting.
Issue -
State: closed - Opened by jahid10 over 1 year ago
- 2 comments
#607 - Changing gradient color and font size in plotFunction SQMtools
Issue -
State: closed - Opened by afsanarupa over 1 year ago
- 9 comments
#606 - Bins refinement in anvio
Issue -
State: closed - Opened by azam17 over 1 year ago
- 1 comment
#605 - Should the use of external database (CAZY) produce abundance data for heatmap generattion?
Issue -
State: closed - Opened by afsanarupa over 1 year ago
- 1 comment
#604 - large percentage of unclassified taxon from family level.
Issue -
State: closed - Opened by jahid10 over 1 year ago
- 9 comments
#603 - Issues at step-10
Issue -
State: closed - Opened by RPIASRI over 1 year ago
- 7 comments
#601 - Problem with external database
Issue -
State: closed - Opened by pedres over 1 year ago
- 4 comments
#598 - Is it possible running SQM in Merged mode with MinION long reads?
Issue -
State: closed - Opened by nutrimol over 1 year ago
- 6 comments
#594 - anvi-load-sqm.py: At least one gene call in your external genes file ('5660473') contains a start position smaller than 0
Issue -
State: closed - Opened by jahid10 over 1 year ago
- 5 comments
Labels: sqm2anvio
#593 - minimus2,spend 5 days!
Issue -
State: closed - Opened by luozhy88 over 1 year ago
- 2 comments
#592 - 01.run_assembly.pl. Program finished abnormally
Issue -
State: closed - Opened by jahid10 over 1 year ago
- 2 comments
#591 - Restart resumes from step 3 even if step 2 failed
Issue -
State: closed - Opened by fpusan over 1 year ago
- 1 comment
#590 - Unclassified terminology
Issue -
State: closed - Opened by analopezlopez over 1 year ago
- 2 comments
#587 - Error in aggregate.data.frame...
Issue -
State: closed - Opened by SMOKO2022 over 1 year ago
- 6 comments
#586 - sqm_reads.pl fails if -p is set to an absolute path instead of a relative one
Issue -
State: open - Opened by fpusan over 1 year ago
Labels: bug, SQM_reads, sqm_longreads
#585 - MetaCyc pathways
Issue -
State: closed - Opened by astromecki over 1 year ago
- 5 comments
#584 - can't find nr.db there, or it is corrupted
Issue -
State: closed - Opened by Yaooo999 over 1 year ago
- 3 comments
#578 - The database download seems to be stuck in the LCA_tax step
Issue -
State: closed - Opened by Yaooo999 over 1 year ago
- 5 comments
#576 - Large amount of unmapped reads
Issue -
State: closed - Opened by fpusan over 1 year ago
- 1 comment
#571 - Restart keeps adding sample names at the end of contigs in merged mode?
Issue -
State: closed - Opened by fpusan over 1 year ago
- 1 comment
#565 - Undefined subroutine &main::error_out called at 01.run_all_assemblies.pl line 231
Issue -
State: closed - Opened by florekem over 1 year ago
- 7 comments
#561 - How to run in hybrid mode and how to pass multiple external assemblies into SqueezeMeta?
Issue -
State: closed - Opened by gaworj over 1 year ago
- 1 comment
#559 - Run stops at diamond process
Issue -
State: closed - Opened by sakcham over 1 year ago
- 21 comments
#553 - Trimmomatic option
Issue -
State: closed - Opened by luozhy88 almost 2 years ago
- 11 comments
#547 - Error in STEP 14
Issue -
State: closed - Opened by EorgeKit almost 2 years ago
- 12 comments
#506 - Support for EggNOG version 5.0.2
Issue -
State: open - Opened by mdehollander about 2 years ago
- 2 comments
Labels: enhancement, databases
#474 - Installing SQMtools in Windows or Mac (including RStudio)
Issue -
State: closed - Opened by fpusan about 2 years ago
- 3 comments
Labels: good first issue, SQMtools
#458 - Step 1.5 seqmerge crash
Issue -
State: closed - Opened by phagelab over 2 years ago
- 23 comments
#456 - Update SQMtools (and R recommendation) to >4.0
Issue -
State: closed - Opened by fpusan over 2 years ago
- 2 comments
Labels: enhancement
#448 - 10.mapsamples.pl. Program finished abnormally: consumes all RAM/SWAP while counting sequences...
Issue -
State: closed - Opened by nucleoli2 over 2 years ago
- 8 comments
#416 - sqm2tables.py - All fixes in one place :-)
Issue -
State: open - Opened by biobrad over 2 years ago
- 8 comments
Labels: SQMtools
#367 - release dates of databases downloaded
Issue -
State: closed - Opened by chandnisidhu almost 3 years ago
- 3 comments
#297 - sqm_counter
Issue -
State: closed - Opened by chandnisidhu about 3 years ago
- 14 comments
#258 - Stopping in STEP1 -> 01.run_assembly.pl issue
Issue -
State: closed - Opened by leehwmj over 3 years ago
- 20 comments