Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / jtamames/SqueezeMeta issues and pull requests
#792 - Some SqueezeMeta dependencies could not be found
Issue -
State: closed - Opened by Manso002 8 months ago
- 5 comments
#791 - Stopping in STEP10 -> 10.mapsamples.pl. Program finished abnormally
Issue -
State: closed - Opened by diegorojasa 8 months ago
- 5 comments
#790 - Error running Sequential mode with external assemblies
Issue -
State: closed - Opened by r-frizzo 8 months ago
- 2 comments
#789 - error running Merging contigs with minimus2
Issue -
State: closed - Opened by DioufMouss0 8 months ago
- 6 comments
#788 - How to group samples of the same treatments?
Issue -
State: closed - Opened by DioufMouss0 8 months ago
- 3 comments
#787 - erro in step 10
Issue -
State: closed - Opened by zhangbenbenchina 8 months ago
- 7 comments
#786 - Error, fewer reads in file specified with -1 than in file specified with -2
Issue -
State: closed - Opened by franccalabrese 8 months ago
- 6 comments
#785 - erro in step1 coassembly~
Issue -
State: closed - Opened by zhangbenbenchina 8 months ago
- 25 comments
#784 - Installation Error
Issue -
State: closed - Opened by RM9717 8 months ago
- 4 comments
#783 - Stopped at Step 9/10, 29-01-24
Issue -
State: closed - Opened by RM9717 8 months ago
- 5 comments
#782 - Stopping in STEP4 -> 04.rundiamond.pl. Program finished abnormally
Issue -
State: closed - Opened by diegorojasa 8 months ago
- 5 comments
#781 - SQMTools R upload Issue
Issue -
State: closed - Opened by Whitehouse2610 8 months ago
- 2 comments
#780 - Error in STEP 1 - 01.run_all_assemblies.pl.
Issue -
State: closed - Opened by Manso002 8 months ago
- 4 comments
#779 - test_install.pl I got many error
Issue -
State: closed - Opened by fpeti11 8 months ago
- 4 comments
#778 - itol
Issue -
State: closed - Opened by HannahBenisty 8 months ago
- 2 comments
#777 - Mac installation of SqueezeMeta
Issue -
State: closed - Opened by luisymbio 8 months ago
- 1 comment
#776 - SQMtools taxonomy output
Issue -
State: closed - Opened by verubel 8 months ago
- 4 comments
#775 - Completeness and Contamination of bins are missing but the other parameters have values
Issue -
State: closed - Opened by zcx970213 9 months ago
- 2 comments
#774 - SqueezeMeta crashes when running on Ubuntu 22 virtualbox computer
Issue -
State: closed - Opened by dutchscientist 9 months ago
- 6 comments
#773 - PacBio data with minimap2 and flye
Issue -
State: closed - Opened by HannahBenisty 9 months ago
- 5 comments
#772 - Issue with step 10 when submitting job on a condor server
Issue -
State: closed - Opened by mwthairu 9 months ago
- 4 comments
#771 - Working with reads
Issue -
State: closed - Opened by inej90 9 months ago
- 2 comments
#770 - Spades unequal amount of reads
Issue -
State: closed - Opened by oyac 9 months ago
- 10 comments
Labels: bug
#769 - Metatranscript
Issue -
State: closed - Opened by zhangbenbenchina 9 months ago
- 1 comment
#768 - Visualizar gráficos generados con R y SQMtools
Issue -
State: closed - Opened by inej90 9 months ago
- 5 comments
#767 - External bins
Issue -
State: closed - Opened by lokyimandy 9 months ago
- 5 comments
#766 - Illegal instruction (core dumped)
Issue -
State: closed - Opened by rakeshkrpatra 9 months ago
- 2 comments
#765 - Error en los inputs (Please do not use blank spaces in the samples file)
Issue -
State: closed - Opened by inej90 10 months ago
- 4 comments
#764 - SQMTools Error Error in subsetORFs
Issue -
State: closed - Opened by johnbio12 10 months ago
- 4 comments
#763 - Problem running the anvi-filter-sqm.py script SMQ2anvio
Issue -
State: closed - Opened by apazminov 10 months ago
- 4 comments
#762 - Stopping in STEP4 —> 04.rundiamond .pl Program finished abnormally
Issue -
State: closed - Opened by gunj27 10 months ago
- 13 comments
#761 - Problems with anvio-load-sqm (in the run-HMMs step)
Issue -
State: closed - Opened by jahid10 10 months ago
- 3 comments
#760 - Error creating taxid.db, please contact us!
Issue -
State: closed - Opened by DeniRibicic 10 months ago
- 4 comments
#759 - Died at line 276 in sqm_longreads.pl
Issue -
State: closed - Opened by FloatingFloss 10 months ago
- 5 comments
#758 - sqm_hmm_reads core dump error
Issue -
State: closed - Opened by Tetrajf 10 months ago
- 3 comments
#757 - 10.mapsamples.pl
Issue -
State: closed - Opened by zhenzhao123 10 months ago
- 3 comments
#756 - read counts
Issue -
State: closed - Opened by zhenzhao123 11 months ago
- 9 comments
#755 - "zip file is corrupt" when loading a zipped project into SQMtools
Issue -
State: open - Opened by fpusan 11 months ago
- 1 comment
Labels: bug, SQMtools
#754 - Benchmark data for HPC cluster
Issue -
State: closed - Opened by fpeti11 11 months ago
- 2 comments
#753 - i am facing the problem to analysing the Ion Torrent Reads.
Issue -
State: closed - Opened by vmevada102 11 months ago
- 11 comments
#752 - 01.run_all_assemblies.pl. Program finished abnormally
Issue -
State: closed - Opened by zhenzhao123 11 months ago
- 3 comments
#751 - 01.run_assembly.pl (megahit)
Issue -
State: closed - Opened by zhenzhao123 11 months ago
- 7 comments
#750 - Sample information problem
Issue -
State: closed - Opened by zhenzhao123 11 months ago
- 7 comments
#749 - The "tax" parameter of the "subsetTax" function could accept list of taxons
Issue -
State: open - Opened by glenjasper 11 months ago
- 3 comments
Labels: enhancement, SQMtools
#748 - Should unclassified and unmapped abundances be taken into account during gene abundance normalization?
Issue -
State: closed - Opened by drbmanna 11 months ago
- 1 comment
#747 - Add the taxonomic category "Kingdom" for eukaryotes
Issue -
State: open - Opened by glenjasper 11 months ago
- 4 comments
Labels: enhancement, Taxonomic annotation
#746 - STABLE VERSION REQUIRED!!! SQUEEZEMETA
Issue -
State: closed - Opened by Michaelijesse 11 months ago
- 1 comment
#745 - The pipeline stopped without finishing megahit
Issue -
State: closed - Opened by feixiang1209 11 months ago
- 2 comments
#744 - sqm_annot.pl fails at splitting Diamond file
Issue -
State: closed - Opened by gracegyho 11 months ago
- 5 comments
#743 - Input error
Issue -
State: closed - Opened by lam-c 11 months ago
- 11 comments
#742 - Using sqm_annot.pl, died at line 223
Issue -
State: closed - Opened by gracegyho 12 months ago
- 2 comments
#741 - Problem with kmer-db installation
Issue -
State: closed - Opened by gracegyho 12 months ago
- 5 comments
#740 - Can I obtain the latest version of the KEGG database using make.download.pl?
Issue -
State: closed - Opened by Lafmas 12 months ago
- 1 comment
#739 - sqm_longreads.pl taxonomy calls
Issue -
State: closed - Opened by mscarbor 12 months ago
- 3 comments
#738 - identify genenames annotated with one database with other.
Issue -
State: closed - Opened by afsanarupa 12 months ago
- 4 comments
#737 - minimap2 --version Segmentation fault
Issue -
State: closed - Opened by jayramr 12 months ago
- 3 comments
#736 - Incorporate MetaGeneMark in ORF prediction
Issue -
State: closed - Opened by tboonf 12 months ago
- 1 comment
#735 - anvio does not go until end
Issue -
State: closed - Opened by Azimdine 12 months ago
- 1 comment
#734 - problem with SqueezeMeta_conf.pl in anvio
Issue -
State: closed - Opened by Azimdine almost 1 year ago
- 7 comments
#733 - Issue with step 6
Issue -
State: closed - Opened by DrJoshVandenbrink about 1 year ago
- 28 comments
#732 - SQM to Phyloseq
Issue -
State: closed - Opened by megberryman about 1 year ago
- 1 comment
#731 - cluster_protein.pl missing and SqueezeMeta.pl missing clustered request in v1.6.3
Issue -
State: closed - Opened by stonyang about 1 year ago
- 2 comments
#730 - Problem with step 10, and step 14
Issue -
State: closed - Opened by jonaskohh about 1 year ago
- 13 comments
#729 - SQMtools version
Issue -
State: closed - Opened by HannahBenisty about 1 year ago
- 12 comments
#728 - Test Data Failure
Issue -
State: closed - Opened by NLZT about 1 year ago
- 6 comments
#727 - Can't find sample file
Issue -
State: closed - Opened by zhenzhao123 about 1 year ago
- 9 comments
#726 - Calculating the RPKM value for species and phylum?
Issue -
State: closed - Opened by lisiruisusan about 1 year ago
- 2 comments
#725 - SQMTOOLS PLOTTAXONOMY 45º labels
Issue -
State: closed - Opened by H1889 about 1 year ago
- 3 comments
#724 - Stopping in STEP10 -> 10.mapsamples.pl. Program finished abnormally
Issue -
State: closed - Opened by Michaelijesse about 1 year ago
- 26 comments
#723 - SPECIFICATION ENQUIRY FOR SQUEEZEMETA
Issue -
State: closed - Opened by Michaelijesse about 1 year ago
- 1 comment
#722 - Can you remove outdated flags for metabat2?
Issue -
State: closed - Opened by mkbwang about 1 year ago
- 3 comments
#721 - Can we analyze the fungal function?
Issue -
State: closed - Opened by yjiakang about 1 year ago
- 2 comments
#720 - download_database.pl failed
Issue -
State: closed - Opened by yjiakang about 1 year ago
- 2 comments
#719 - SQMtools subsetTax error
Issue -
State: closed - Opened by mradz19 about 1 year ago
- 4 comments
#718 - assembly error
Issue -
State: closed - Opened by wittney-m about 1 year ago
- 1 comment
#717 - Formatting external database
Issue -
State: closed - Opened by mradz19 about 1 year ago
- 1 comment
#716 - ERROR: STEP14 -> BINNING & STEP 18 checkM_batch.pl
Issue -
State: closed - Opened by sogada about 1 year ago
- 7 comments
#715 - Problem with $installpath in SqueezeMeta
Issue -
State: closed - Opened by lichen-fungus about 1 year ago
- 8 comments
#714 - Can't open samples file (-s) in /data/00..samples.
Issue -
State: closed - Opened by lichen-fungus about 1 year ago
- 2 comments
#713 - restart
Issue -
State: closed - Opened by HannahBenisty about 1 year ago
- 14 comments
#712 - Are the rRNA gene sequences removed?
Issue -
State: closed - Opened by yjiakang about 1 year ago
- 8 comments
#711 - KEGG database
Issue -
State: closed - Opened by alicegrih about 1 year ago
- 3 comments
#710 - How to extract sequences for a specific KEGG ID
Issue -
State: closed - Opened by mradz19 about 1 year ago
- 8 comments
#709 - Error in Spades assembly (ver1.6.2 post3)
Issue -
State: closed - Opened by RIJP-SU about 1 year ago
- 10 comments
#708 - Exit code -9
Issue -
State: closed - Opened by AntonioPuriel about 1 year ago
- 2 comments
#707 - Stopping in STEP4
Issue -
State: closed - Opened by RIJP-SU about 1 year ago
- 13 comments
#706 - Faillure : Stopping in STEP18 -> 17.checkM_batch.pl
Issue -
State: closed - Opened by bbalog87 about 1 year ago
- 5 comments
#705 - Checking all installs
Issue -
State: closed - Opened by bioforkgithub over 1 year ago
- 11 comments
#704 - STEP10 -> 10.mapsamples.pl failled due to cp command not finding second read pair
Issue -
State: closed - Opened by bbalog87 over 1 year ago
- 3 comments
#703 - restart at step 10 question
Issue -
State: closed - Opened by bresyd over 1 year ago
- 8 comments
#702 - Run stopped during step 10 due to missing files
Issue -
State: closed - Opened by mradz19 over 1 year ago
#701 - Using dedupe.sh to identify and remove contigs contained in others (merged mode)
Issue -
State: open - Opened by eperezv over 1 year ago
- 2 comments
Labels: enhancement, merged mode, Assembly, seqmerge mode
#700 - SQMLite from functional subset with sqmreads2tables.py - All Taxa plotted as "Other"
Issue -
State: closed - Opened by mscarbor over 1 year ago
- 6 comments
#699 - Fresh install of newest version of SqueezeMeta missing almost all python libraries
Issue -
State: closed - Opened by mradz19 over 1 year ago
#698 - Determining the abundance of bins
Issue -
State: closed - Opened by mradz19 over 1 year ago
- 1 comment
#697 - Species Abundance with different higher levels of Taxa names
Issue -
State: closed - Opened by drbmanna over 1 year ago
- 2 comments
#696 - 04.rundiamond.pl. Program finished abnormally : taxaError: Invalid parameter count for option '--out'
Issue -
State: closed - Opened by fconstancias over 1 year ago
- 6 comments
#695 - STEP10 - frozen at sqm_counter
Issue -
State: closed - Opened by dgarrs over 1 year ago
- 9 comments
#694 - STEP10 -> 10.mapsamples.pl.
Issue -
State: closed - Opened by kostovci over 1 year ago
- 25 comments
#693 - Squeezemeta warning for STEP15
Issue -
State: closed - Opened by sarpiens over 1 year ago
- 4 comments