Ecosyste.ms: Issues

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GitHub / jsxlei/SCALEX issues and pull requests

#27 - Loss function of VAE

Issue - State: closed - Opened by blastlove 8 months ago - 1 comment

#26 - Preprocessing of ATAC Data

Issue - State: closed - Opened by blastlove 8 months ago - 1 comment

#25 - mouse_brain_atac datasets failed to download

Issue - State: closed - Opened by blastlove 8 months ago - 1 comment

#24 - Possible bug in preprocessing

Issue - State: closed - Opened by Beiusxzw 10 months ago

#23 - datasets failed to download

Issue - State: open - Opened by UnkownNames 12 months ago - 6 comments

#21 - np.warnings has been removed from newer version of numpy

Issue - State: closed - Opened by zhaleh-safikhani about 1 year ago - 1 comment

#20 - Customize num_workers

Issue - State: closed - Opened by marx-alex over 1 year ago - 1 comment

#18 - model.train() setting

Issue - State: closed - Opened by GlancerZ over 1 year ago - 1 comment

#17 - can not repeat your tutorial "ntegrating scATAC-seq data using SCALEX"

Issue - State: closed - Opened by daweibushen over 1 year ago - 3 comments

#16 - SCALEX metrics help

Issue - State: closed - Opened by kostaslazaros over 1 year ago - 8 comments

#15 - Projection onto new dataset requires shared latent space

Issue - State: closed - Opened by ryeking2010 over 1 year ago - 1 comment

#14 - Paths are incorrectly handled

Issue - State: closed - Opened by scottgigante-immunai over 1 year ago - 1 comment

#13 - Uncorrect representation assignment?

Issue - State: closed - Opened by biosyssun over 1 year ago - 2 comments

#12 - Without X_umap in obsm of output adata

Issue - State: closed - Opened by houruiyan over 1 year ago - 4 comments

#12 - Without X_umap in obsm of output adata

Issue - State: closed - Opened by houruiyan over 1 year ago - 4 comments

#11 - TypeError: SCALEX() got an unexpected keyword argument 'test_list

Issue - State: closed - Opened by houruiyan over 1 year ago - 3 comments

#10 - Unused attribute n_domain in VAE

Issue - State: closed - Opened by parashardhapola over 1 year ago - 2 comments

#10 - Unused attribute n_domain in VAE

Issue - State: closed - Opened by parashardhapola over 1 year ago - 2 comments

#9 - indices in VAE.encodeBatch

Issue - State: closed - Opened by parashardhapola over 1 year ago - 2 comments

#9 - indices in VAE.encodeBatch

Issue - State: closed - Opened by parashardhapola over 1 year ago - 2 comments

#8 - `outdir=None` throws errors

Issue - State: closed - Opened by scottgigante-immunai over 1 year ago - 1 comment

#7 - impute=True error

Issue - State: closed - Opened by scottgigante-immunai over 1 year ago - 2 comments

#6 - Intra-sample batches for large datasets

Issue - State: closed - Opened by parashardhapola over 1 year ago - 1 comment

#5 - fixed duplicated hanlders

Pull Request - State: closed - Opened by AaronNing almost 2 years ago

#3 - CITE-seq

Issue - State: open - Opened by ebrombacher over 2 years ago - 4 comments

#3 - CITE-seq

Issue - State: closed - Opened by ebrombacher over 2 years ago - 4 comments

#2 - Code to reproduce results?

Issue - State: closed - Opened by adamgayoso about 3 years ago