jstockwin/epiestimapp issues and pull requests

#197 - Fix incorrect tag in news

Pull Request - State: closed - Opened by jstockwin over 4 years ago

#196 - Bump EpiEstim version

Pull Request - State: closed - Opened by jstockwin over 4 years ago

#195 - [Dockerfile] Remove fix for installation bug

Pull Request - State: closed - Opened by jstockwin almost 5 years ago

#194 - Speed up github actions test suite

Issue - State: open - Opened by jstockwin almost 5 years ago

#193 - Development process overhaul

Pull Request - State: closed - Opened by jstockwin almost 5 years ago

#192 - Switch to github actions for testing

Issue - State: closed - Opened by jstockwin almost 5 years ago

#191 - Fix bug where plots don't download

Pull Request - State: closed - Opened by jstockwin almost 5 years ago

#190 - EpiEstim App fail to save Image

Issue - State: closed - Opened by applebear0507 almost 5 years ago - 5 comments
Labels: bug

#189 - Update README to contain details of the paper

Pull Request - State: closed - Opened by jstockwin about 5 years ago

#188 - Change "submitted" to "Epidemics"

Pull Request - State: closed - Opened by jstockwin over 5 years ago

#187 - Ignore files created by twinkle during provisioning

Pull Request - State: closed - Opened by richfitz over 5 years ago - 1 comment

#186 - Set up for dide

Pull Request - State: closed - Opened by annecori over 5 years ago

#185 - [release] Version 1.0.0, plus add news, update description

Pull Request - State: closed - Opened by jstockwin over 5 years ago

#184 - Use tempfile for mcmc-progress folder

Pull Request - State: closed - Opened by jstockwin over 5 years ago

#183 - Re-enable test suite 004.01.3

Issue - State: closed - Opened by jstockwin over 5 years ago

#182 - Improve development process and create DEVELOPMENT.md

Issue - State: closed - Opened by jstockwin over 5 years ago

#181 - [travis] Fix running tests on travis

Pull Request - State: closed - Opened by jstockwin over 5 years ago

#180 - don't use hackout3

Pull Request - State: closed - Opened by zkamvar over 5 years ago

#179 - Include a dockerfile

Issue - State: closed - Opened by jstockwin almost 6 years ago

#178 - Fix typos

Pull Request - State: closed - Opened by jstockwin almost 6 years ago - 1 comment

#177 - New version

Pull Request - State: closed - Opened by annecori over 6 years ago

#176 - use make_config and make_mcmc_control as per new version of EpiEstim

Issue - State: closed - Opened by annecori almost 7 years ago - 1 comment

#175 - change `plots` to `plot` as per new version of EpiEstim

Issue - State: closed - Opened by annecori almost 7 years ago - 1 comment

#174 - Interface revision

Pull Request - State: closed - Opened by annecori almost 7 years ago - 1 comment

#173 - check renaming of I to incid is ok

Issue - State: open - Opened by annecori almost 7 years ago

#172 - point to master version of EpiEstim

Issue - State: closed - Opened by annecori almost 7 years ago - 1 comment

#171 - Fix psate -> paste

Pull Request - State: closed - Opened by robin-thompson almost 7 years ago - 1 comment

#170 - Rename W to τ

Pull Request - State: closed - Opened by jstockwin almost 7 years ago

#169 - Robin changes wording

Pull Request - State: closed - Opened by jstockwin almost 7 years ago

#168 - Target EpiEstim@master now PR has been merged

Pull Request - State: closed - Opened by jstockwin almost 7 years ago

#167 - Recon update

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#166 - Updated author list

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#165 - Wording udpates

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#164 - Tweaks

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#163 - Added metadata to page

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#162 - Rename Flu to H1N1 in datasets

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#161 - Update datasets page

Issue - State: closed - Opened by jstockwin over 7 years ago - 1 comment
Labels: docs

#160 - Validation errors/testing

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#159 - Link to idocs in each state. Give current progress.

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#158 - Need to ensure all datasets are described in the docs

Issue - State: closed - Opened by jstockwin over 7 years ago - 1 comment
Labels: docs

#157 - Updated app wording

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#156 - Datasets

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#155 - [EpiEstim] Setting `n2=1` in state 8.1 errors

Issue - State: closed - Opened by jstockwin over 7 years ago - 2 comments
Labels: bug, on hold

#154 - Update app wording

Issue - State: closed - Opened by jstockwin over 7 years ago
Labels: in progress

#153 - Update wording in state 5.1

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#152 - Removed separator/quote options from file uploads

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#151 - Kill all async stuff on STOP, not just MCMC

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#150 - Restuctured distributional SI estimates bit of decision tree

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#149 - Pressing stop should kill the process

Issue - State: closed - Opened by jstockwin over 7 years ago
Labels: in progress

#148 - Kill things that are taking too long

Issue - State: closed - Opened by jstockwin over 7 years ago
Labels: ux

#147 - Merge state 6.2, 7.4 and 8.5 into one

Issue - State: closed - Opened by jstockwin over 7 years ago
Labels: in progress

#146 - Remove separator options entirely

Issue - State: closed - Opened by jstockwin over 7 years ago - 1 comment
Labels: in progress

#145 - Make it clear that state 8.4 uses a discretised offset gamma dist

Issue - State: closed - Opened by jstockwin over 7 years ago - 1 comment
Labels: ui

#144 - Make it clear what the params are for in state 7.3

Issue - State: closed - Opened by jstockwin over 7 years ago - 1 comment
Labels: ui, ux

#143 - Make state 5.1 clearer

Issue - State: closed - Opened by jstockwin over 7 years ago
Labels: ui

#142 - Need to specify that the prior on R is gamma

Issue - State: closed - Opened by jstockwin over 7 years ago - 1 comment
Labels: docs

#141 - Update README

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#140 - Remove default port of 3000

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#139 - Updated wording above app

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#138 - [docs] Links from idocs to datasets page are broken

Issue - State: closed - Opened by jstockwin over 7 years ago - 1 comment
Labels: docs, in progress

#137 - [tests] Run EpiEstim inside a test_that

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#136 - List datasets consistently

Issue - State: closed - Opened by jstockwin over 7 years ago
Labels: in progress

#135 - Some kind of progress bar for states?

Issue - State: closed - Opened by jstockwin over 7 years ago
Labels: ui, ux, in progress

#134 - Links to docs from app should open in new tab

Issue - State: closed - Opened by jstockwin over 7 years ago
Labels: ux, in progress

#133 - Update wording above app

Issue - State: closed - Opened by jstockwin over 7 years ago
Labels: in progress

#132 - [EpiEstim] Testing

Issue - State: closed - Opened by jstockwin over 7 years ago - 1 comment
Labels: testing

#131 - Transmissibility estimator wording

Issue - State: closed - Opened by robin-thompson over 7 years ago
Labels: ui, in progress

#130 - Host and port issue for FAQs

Issue - State: closed - Opened by robin-thompson over 7 years ago - 1 comment
Labels: in progress

#129 - Testing

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#128 - [fix] Stop files in MCMC progress being deleted by server

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#127 - Fix description so EpiEstim is installed by Travis

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#126 - [EpiEstim] Changing `Min.Std.SI` seems to break things (State 7.3)

Issue - State: closed - Opened by jstockwin over 7 years ago - 3 comments
Labels: bug, on hold

#125 - [docs] Updated README.md

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#124 - Updated decision tree schematic

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#123 - Update NAMESPACE and DESCRIPTION files, remove unnecessay imports

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#122 - Decision Tree Schematic needs updating

Issue - State: closed - Opened by jstockwin over 7 years ago
Labels: in progress

#121 - Link to documentation page from each state?

Issue - State: closed - Opened by jstockwin over 7 years ago
Labels: enhancement, docs, in progress

#120 - Imports issue

Issue - State: closed - Opened by jstockwin over 7 years ago - 1 comment
Labels: in progress

#119 - Build is not necessarily failed if EpiEstim crashes

Issue - State: closed - Opened by jstockwin over 7 years ago
Labels: testing, in progress

#118 - Testing

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#117 - State 8.3 is broken

Issue - State: closed - Opened by jstockwin over 7 years ago - 1 comment
Labels: bug, in progress

#116 - KirabatiRotavirus imported incidence data is wrong

Issue - State: closed - Opened by jstockwin over 7 years ago
Labels: bug, in progress

#115 - Testing

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#114 - Some of the SI.Posterior Samples are huge

Issue - State: open - Opened by jstockwin over 7 years ago - 3 comments

#113 - Added imported incidence data files

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#112 - [bugfix] Added `n2` and `seed` options to state 8.1

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#111 - There is no way to set `n2` for endpoint 8.1 (SIFromSample)

Issue - State: closed - Opened by jstockwin over 7 years ago
Labels: bug

#110 - Fix SIPosteriorSamples filenames

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#109 - Add testing for all remaining states

Pull Request - State: closed - Opened by jstockwin over 7 years ago

#108 - Update readme etc

Issue - State: closed - Opened by jstockwin over 7 years ago
Labels: docs, in progress

#105 - Documentation needs updating following wording changes

Issue - State: closed - Opened by jstockwin over 7 years ago - 2 comments
Labels: docs

#100 - ALPHA RELEASE

Issue - State: closed - Opened by jstockwin over 7 years ago - 1 comment
Labels: help wanted, meta

#90 - Limit MCMC (2)

Issue - State: closed - Opened by jstockwin over 7 years ago - 1 comment
Labels: enhancement

#54 - Input validation/error handling

Issue - State: closed - Opened by jstockwin almost 8 years ago
Labels: ui, ux, in progress

#18 - Site metadata/favicon

Issue - State: closed - Opened by jstockwin about 8 years ago - 2 comments
Labels: in progress

#17 - Stop installing packages using install_github, when possible

Issue - State: open - Opened by jstockwin about 8 years ago - 1 comment
Labels: on hold

#16 - Link to publication, when possible

Issue - State: closed - Opened by jstockwin about 8 years ago
Labels: on hold

#11 - Documentation

Issue - State: closed - Opened by jstockwin about 8 years ago - 4 comments
Labels: help wanted, docs, in progress

#9 - Find example files

Issue - State: closed - Opened by jstockwin about 8 years ago - 3 comments
Labels: enhancement, testing

#8 - TESTING

Issue - State: closed - Opened by jstockwin about 8 years ago - 4 comments
Labels: help wanted, testing, in progress

GitHub / jstockwin/epiestimapp issues and pull requests