Ecosyste.ms: Issues

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GitHub / js51/SplitP issues and pull requests

#38 - Re-organise modules

Pull Request - State: closed - Opened by js51 9 months ago

#37 - Bump scipy from 1.5.2 to 1.10.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#36 - Js51 patch 1

Pull Request - State: closed - Opened by js51 over 1 year ago

#35 - Main

Pull Request - State: closed - Opened by js51 over 1 year ago

#34 - Add type hints and fix typing issues

Issue - State: open - Opened by js51 about 2 years ago

#33 - Remove the cap on the number of taxa due to representation of split

Pull Request - State: closed - Opened by js51 about 2 years ago

#32 - Bump numpy from 1.19.5 to 1.22.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#31 - Bump numpy from 1.19.2 to 1.19.5

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#30 - Bump numpy from 1.19.2 to 1.21.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#29 - Some various improvements

Pull Request - State: closed - Opened by js51 over 2 years ago

#28 - Speedup

Pull Request - State: closed - Opened by js51 over 2 years ago

#27 - add lots of new stuff, improve testing

Pull Request - State: closed - Opened by js51 over 3 years ago

#26 - Develop

Pull Request - State: closed - Opened by js51 over 3 years ago

#25 - Implement rate matrices

Pull Request - State: closed - Opened by js51 over 3 years ago

#24 - Some new features and improvements

Pull Request - State: closed - Opened by js51 over 3 years ago

#23 - Some functions aren't equipped to deal with non-integer vertex labels.

Issue - State: open - Opened by js51 over 3 years ago
Labels: bug

#22 - update dev branch

Pull Request - State: closed - Opened by js51 over 3 years ago

#21 - fix true_splits function

Pull Request - State: closed - Opened by js51 over 3 years ago

#20 - Create exceptions class

Issue - State: open - Opened by js51 over 3 years ago - 1 comment

#19 - Write more helper functions to generate different general classes of binary trees

Issue - State: open - Opened by js51 over 3 years ago
Labels: enhancement, good first issue

#18 - new docs

Pull Request - State: closed - Opened by js51 over 3 years ago

#17 - New documentation

Pull Request - State: closed - Opened by js51 over 3 years ago

#16 - Develop

Pull Request - State: closed - Opened by js51 over 3 years ago

#15 - Squangles

Pull Request - State: closed - Opened by js51 almost 4 years ago

#14 - Include missing files in sdist

Pull Request - State: closed - Opened by thatch over 4 years ago - 1 comment

#12 - Refactor package structure

Issue - State: open - Opened by js51 over 4 years ago
Labels: enhancement

#11 - Implement new 'shared edges' algorithm

Issue - State: open - Opened by js51 over 4 years ago
Labels: enhancement

#10 - Implement Squangles

Issue - State: closed - Opened by js51 over 4 years ago
Labels: enhancement

#9 - Make it possible to construct subflattenings for trees with 10+ taxa

Issue - State: closed - Opened by js51 over 4 years ago
Labels: enhancement

#8 - New tree implementation, remove old tree implementation and old examples.

Pull Request - State: closed - Opened by js51 over 4 years ago

#7 - New tree implementation, version bump to 0.1.0

Pull Request - State: closed - Opened by js51 over 4 years ago

#6 - Replace tree implementation with network x

Pull Request - State: closed - Opened by js51 over 4 years ago

#5 - Create CLI for basic functionality

Issue - State: open - Opened by js51 over 4 years ago
Labels: enhancement

#4 - Create examples folder with a few clearly written examples

Issue - State: open - Opened by js51 over 4 years ago

#3 - Create user-friendly documentation

Issue - State: closed - Opened by js51 over 4 years ago
Labels: documentation

#2 - Improve test coverage

Issue - State: open - Opened by js51 over 4 years ago
Labels: help wanted

#1 - Change tree implementation to use NetworkX

Issue - State: closed - Opened by js51 over 4 years ago
Labels: enhancement