Ecosyste.ms: Issues

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GitHub / js51/Circular-genome-tools issues and pull requests

#47 - Update VERSION

Pull Request - State: closed - Opened by js51 5 months ago

#46 - Add eigenvector method for partial traces

Pull Request - State: closed - Opened by js51 6 months ago

#45 - Add configuration settings to Model

Issue - State: open - Opened by js51 7 months ago

#44 - Rewrite irreps for H_n

Pull Request - State: closed - Opened by js51 over 1 year ago

#43 - Update python-publish.yml

Pull Request - State: closed - Opened by js51 over 1 year ago

#41 - Add functionality for simulating genome rearrangements on a tree

Issue - State: closed - Opened by js51 over 1 year ago
Labels: enhancement

#40 - Simulations

Pull Request - State: closed - Opened by js51 over 1 year ago

#38 - Minor changes that never got pushed from last year

Pull Request - State: closed - Opened by js51 almost 2 years ago

#37 - Simplify language for model s_element

Issue - State: open - Opened by js51 over 2 years ago
Labels: documentation

#36 - Add support for computing conjugacy classes

Pull Request - State: closed - Opened by js51 about 3 years ago

#35 - Make it easier to compute MLEs for multiple genomes

Issue - State: closed - Opened by js51 about 3 years ago

#34 - Bug fixes and small changes for RECOMB-CG paper submission

Pull Request - State: closed - Opened by js51 about 3 years ago

#33 - add binning and other routines

Pull Request - State: closed - Opened by js51 about 3 years ago

#32 - Fix gap irreps by transposing, use numpy eigenvalues

Pull Request - State: closed - Opened by js51 over 3 years ago

#30 - Ensure every function has a docstring

Issue - State: open - Opened by js51 over 3 years ago
Labels: documentation, help wanted

#29 - Restructure likelihood computation

Pull Request - State: closed - Opened by js51 over 3 years ago

#28 - Bug fixes

Pull Request - State: closed - Opened by js51 over 3 years ago

#27 - Rebase

Pull Request - State: closed - Opened by js51 over 3 years ago

#26 - Rebase

Pull Request - State: closed - Opened by js51 over 3 years ago

#25 - Develop

Pull Request - State: closed - Opened by js51 over 3 years ago

#24 - Update develop

Pull Request - State: closed - Opened by js51 over 3 years ago

#23 - Update develop (#20)

Pull Request - State: closed - Opened by js51 over 3 years ago

#22 - Improve caching

Pull Request - State: closed - Opened by js51 over 3 years ago

#21 - Make Model more intelligent

Issue - State: open - Opened by js51 over 3 years ago
Labels: enhancement

#20 - Update develop

Pull Request - State: closed - Opened by js51 over 3 years ago

#19 - Documentation

Pull Request - State: closed - Opened by js51 over 3 years ago

#18 - add docs, remove * imports

Pull Request - State: closed - Opened by js51 over 3 years ago

#17 - More distances, pytest now working with sage

Pull Request - State: closed - Opened by js51 over 3 years ago

#16 - Get pytest working with sage

Pull Request - State: closed - Opened by js51 over 3 years ago

#15 - Add likelihood functions

Pull Request - State: closed - Opened by js51 over 3 years ago

#13 - Model elements

Issue - State: closed - Opened by js51 over 3 years ago - 1 comment
Labels: enhancement, maths

#12 - Add models

Pull Request - State: closed - Opened by js51 over 3 years ago

#8 - Remove old code, replace most of it.

Pull Request - State: closed - Opened by js51 over 3 years ago

#7 - Develop

Pull Request - State: closed - Opened by js51 over 3 years ago

#6 - Rewrite

Pull Request - State: closed - Opened by js51 over 3 years ago

#5 - Lots of misc. new stuff, fixes

Pull Request - State: closed - Opened by js51 over 3 years ago

#4 - Improve genome visualisation module

Issue - State: open - Opened by js51 over 3 years ago - 1 comment
Labels: enhancement, help wanted

#3 - Develop

Pull Request - State: closed - Opened by js51 over 4 years ago

#2 - Develop

Pull Request - State: closed - Opened by js51 over 4 years ago

#1 - Some new functions and some fixes

Pull Request - State: closed - Opened by js51 over 4 years ago