Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / josiahseaman/FluentDNA issues and pull requests

#95 - PDF

Issue - State: open - Opened by GuyBenzvi 12 months ago - 4 comments
Labels: enhancement

#94 - 2.5.3 Natural Chromosome Layouts

Pull Request - State: closed - Opened by josiahseaman over 4 years ago

#93 - Python 3.7+ issue with `os` import of `errno`

Issue - State: closed - Opened by aganezov almost 5 years ago - 4 comments

#92 - Pull Rename into Pip

Pull Request - State: closed - Opened by josiahseaman almost 5 years ago

#91 - Fluentdna Rename

Pull Request - State: closed - Opened by josiahseaman almost 5 years ago

#90 - The Big Rename: FluentDNA

Issue - State: closed - Opened by josiahseaman almost 5 years ago
Labels: documentation

#89 - 2.4.5

Pull Request - State: closed - Opened by josiahseaman almost 5 years ago

#88 - Compiling on Old Environments

Issue - State: closed - Opened by josiahseaman almost 5 years ago - 1 comment
Labels: documentation

#87 - I86 repeatmasker gallery

Pull Request - State: closed - Opened by josiahseaman almost 5 years ago

#86 - Transposon View: Resurrecting RepeatMasker gallery

Issue - State: closed - Opened by josiahseaman almost 5 years ago
Labels: enhancement, documentation

#85 - Graph Genomes: ODGI Matrix layout in FluentDNA

Issue - State: closed - Opened by josiahseaman almost 5 years ago - 2 comments
Labels: enhancement

#84 - Refactor: Allow MSA mouseover in mixed layouts

Issue - State: open - Opened by josiahseaman almost 5 years ago
Labels: enhancement, documentation

#83 - 2.4.4: Usability and server improvement for Publication

Pull Request - State: closed - Opened by josiahseaman almost 5 years ago

#82 - Alignment Stats: add syntenic versus translocations

Issue - State: closed - Opened by josiahseaman about 5 years ago
Labels: enhancement

#81 - Publication Refinement

Issue - State: closed - Opened by josiahseaman about 5 years ago
Labels: enhancement

#80 - Keep pip up to date

Pull Request - State: closed - Opened by josiahseaman about 5 years ago

#79 - Update pip to 2.4.2

Pull Request - State: closed - Opened by josiahseaman over 5 years ago

#78 - Chromosome Streaming

Issue - State: open - Opened by josiahseaman over 5 years ago
Labels: enhancement

#77 - Reproducibility: Download links for all Data Sources

Issue - State: closed - Opened by josiahseaman over 5 years ago

#76 - Nice Layout for Examples Gallery

Issue - State: open - Opened by josiahseaman over 5 years ago
Labels: enhancement

#75 - GO TO Functionality on Webpage

Issue - State: open - Opened by josiahseaman over 5 years ago
Labels: enhancement

#74 - Genome Alignment: Ref doesn't show gaps in translocations

Issue - State: open - Opened by josiahseaman almost 6 years ago
Labels: bug

#73 - Ungapped index for Genome Alignment Mouseover

Issue - State: open - Opened by josiahseaman almost 6 years ago
Labels: enhancement

#72 - Multiple sequence retrieval

Pull Request - State: closed - Opened by josiahseaman almost 6 years ago

#71 - Sequence Retreival for Multiple Sequence Alignment

Issue - State: closed - Opened by josiahseaman almost 6 years ago - 1 comment
Labels: enhancement

#70 - Ideogram: Mouse coordinate padding is off at the end of each chromatin fiber row

Issue - State: closed - Opened by josiahseaman almost 6 years ago
Labels: wontfix

#69 - Page not loading on 127.0.0.1 private network

Issue - State: open - Opened by josiahseaman almost 6 years ago
Labels: bug, help wanted

#68 - Ideogram and sequence retrieval

Pull Request - State: closed - Opened by josiahseaman almost 6 years ago

#67 - Machine learning backend

Issue - State: open - Opened by photomedia almost 6 years ago - 1 comment
Labels: enhancement

#66 - NucleotideNumber is showing even when pointing to label

Issue - State: closed - Opened by photomedia almost 6 years ago - 1 comment
Labels: bug

#65 - Clarity in Whole Genome Alignment

Issue - State: closed - Opened by josiahseaman almost 6 years ago - 5 comments
Labels: enhancement

#64 - User defined Layout

Issue - State: closed - Opened by josiahseaman almost 6 years ago

#63 - Search: What is Practical and Useful?

Issue - State: open - Opened by josiahseaman almost 6 years ago
Labels: enhancement

#62 - Restore sequence retrieval under mouse cursor

Issue - State: closed - Opened by josiahseaman almost 6 years ago - 2 comments
Labels: enhancement

#61 - GFF3 support

Issue - State: closed - Opened by josiahseaman almost 6 years ago - 1 comment
Labels: enhancement, help wanted

#60 - Useful to developers: Outputting Gene Coordinates to CSV

Issue - State: open - Opened by josiahseaman almost 6 years ago
Labels: enhancement, help wanted, documentation

#59 - Annotation Outlines have opacity side effects

Issue - State: closed - Opened by josiahseaman about 6 years ago - 4 comments
Labels: bug

#58 - www-data folder in GUI build

Issue - State: closed - Opened by photomedia about 6 years ago - 8 comments

#57 - Double copying fasta files when using --contigs

Issue - State: open - Opened by josiahseaman about 6 years ago
Labels: bug

#56 - User Friendly Installation

Issue - State: open - Opened by josiahseaman over 6 years ago - 7 comments
Labels: enhancement

#55 - compilation error - hold_console_for_windows

Issue - State: closed - Opened by photomedia over 6 years ago - 3 comments

#54 - Runserver unresponsive

Issue - State: open - Opened by josiahseaman over 6 years ago

#53 - Chromosome Poster - Ideogram Layout with Space filling curve

Issue - State: open - Opened by josiahseaman over 6 years ago - 3 comments
Labels: enhancement

#52 - User adjustable width.

Pull Request - State: closed - Opened by josiahseaman over 6 years ago

#51 - Showing aligned sequence source as annotation

Issue - State: closed - Opened by josiahseaman over 6 years ago
Labels: enhancement

#50 - Investigate Annotorious as an Annotation tool

Issue - State: open - Opened by josiahseaman over 6 years ago
Labels: question

#49 - Project Website - Documentation

Issue - State: closed - Opened by josiahseaman over 6 years ago - 5 comments
Labels: bug, documentation

#48 - Mac max image size is much smaller (178 million pixels)

Issue - State: open - Opened by josiahseaman over 6 years ago
Labels: question

#47 - Visual C++ dependency in Python 3.5+

Issue - State: closed - Opened by josiahseaman over 6 years ago - 2 comments
Labels: bug, help wanted

#46 - Running DDV2 in Windows

Issue - State: closed - Opened by photomedia over 6 years ago - 12 comments

#45 - Future: Just in time rendering

Issue - State: open - Opened by josiahseaman over 6 years ago - 1 comment
Labels: enhancement, wontfix

#44 - Color Zooming - best of both worlds

Issue - State: open - Opened by josiahseaman over 6 years ago - 1 comment
Labels: enhancement, help wanted

#43 - VCF file parser for RADseq

Issue - State: open - Opened by josiahseaman over 6 years ago

#42 - Standalone DDV script that uses current python version

Issue - State: open - Opened by josiahseaman over 6 years ago
Labels: enhancement

#41 - Correct legend for protein sequences

Issue - State: closed - Opened by josiahseaman over 6 years ago - 1 comment
Labels: enhancement

#40 - Include example data files and tests for users

Issue - State: closed - Opened by josiahseaman over 6 years ago - 1 comment
Labels: enhancement

#39 - Bug: Nucleotide Number mouse over doesn't make sense in some contexts

Issue - State: closed - Opened by josiahseaman over 6 years ago - 1 comment
Labels: bug, enhancement

#38 - Pip installable refactor

Pull Request - State: closed - Opened by josiahseaman over 6 years ago - 1 comment

#37 - Quick mode should create a webpage and launch a browser for large files

Issue - State: open - Opened by josiahseaman almost 7 years ago
Labels: enhancement

#36 - Allow user to set fixed width from command line

Issue - State: closed - Opened by josiahseaman almost 7 years ago
Labels: enhancement, question

#35 - Manage File Assets for Batch Processing of a Genome

Issue - State: open - Opened by josiahseaman almost 8 years ago
Labels: enhancement

#34 - Multiple Reference Contigs in one Alignment Visualization

Issue - State: open - Opened by josiahseaman almost 8 years ago
Labels: enhancement

#33 - Edit in Translocations

Issue - State: closed - Opened by josiahseaman almost 8 years ago - 1 comment

#32 - Faster reverse complement

Issue - State: closed - Opened by josiahseaman almost 8 years ago

#31 - Allow Contig breaks (headers) in Parallel View

Issue - State: closed - Opened by josiahseaman almost 8 years ago - 1 comment

#30 - Compile for Linux

Issue - State: open - Opened by josiahseaman almost 8 years ago

#29 - Actual development merged to python-master

Pull Request - State: closed - Opened by josiahseaman almost 8 years ago

#28 - Unique Sequence Visualization

Issue - State: closed - Opened by josiahseaman almost 8 years ago
Labels: enhancement

#27 - Annotation Layer ordering

Issue - State: closed - Opened by josiahseaman almost 8 years ago
Labels: enhancement, wontfix, minor

#26 - Toggleable annotation layers

Issue - State: closed - Opened by josiahseaman almost 8 years ago
Labels: wontfix

#25 - Listing of Available Annotation Overlays

Issue - State: closed - Opened by josiahseaman almost 8 years ago
Labels: enhancement, wontfix

#24 - Summary Statistics

Issue - State: open - Opened by BryanHurst about 8 years ago

#23 - Break alignment stats up into phases

Issue - State: open - Opened by josiahseaman about 8 years ago
Labels: enhancement

#22 - Standalone executable

Issue - State: open - Opened by josiahseaman about 8 years ago

#21 - DDV annotation pop over

Issue - State: closed - Opened by josiahseaman about 8 years ago
Labels: enhancement, wontfix

#20 - Show only Exons in Gencode annotation

Issue - State: closed - Opened by josiahseaman about 8 years ago
Labels: wontfix

#19 - SVG Display Demo in OpenSeaDragon

Issue - State: closed - Opened by josiahseaman about 8 years ago - 1 comment

#18 - Annotation display in DDV pages

Issue - State: open - Opened by josiahseaman about 8 years ago - 4 comments
Labels: enhancement

#17 - Double check accuracy of alignment

Issue - State: closed - Opened by josiahseaman about 8 years ago - 1 comment
Labels: bug

#16 - Move all FASTA sources to output specific folder

Issue - State: closed - Opened by josiahseaman about 8 years ago
Labels: enhancement

#15 - Read chromosome contig from whole genome files

Issue - State: closed - Opened by josiahseaman about 8 years ago
Labels: enhancement

#14 - Use all Alignment information from Chain Files

Issue - State: closed - Opened by josiahseaman about 8 years ago - 7 comments
Labels: enhancement

#13 - Generate Independent Visualization Pages from Python

Issue - State: closed - Opened by josiahseaman about 8 years ago
Labels: enhancement

#12 - Generate FASTA from pairwise alignment "chain" files

Issue - State: closed - Opened by josiahseaman over 8 years ago - 6 comments
Labels: enhancement

#11 - Parallel Genomes Layout

Issue - State: closed - Opened by josiahseaman over 8 years ago - 5 comments
Labels: enhancement

#10 - Gallery Feature

Issue - State: open - Opened by josiahseaman over 8 years ago
Labels: enhancement

#9 - Reallly Large Images

Issue - State: closed - Opened by josiahseaman over 8 years ago - 1 comment
Labels: enhancement

#8 - Text Labels for contigs

Issue - State: closed - Opened by josiahseaman over 8 years ago - 2 comments
Labels: enhancement

#7 - Multi-part FASTA File display

Issue - State: closed - Opened by josiahseaman over 8 years ago - 2 comments

#6 - Switch download service to VERSION instead of GI

Issue - State: open - Opened by josiahseaman over 8 years ago
Labels: enhancement, minor

#5 - Interface naming robustness

Issue - State: closed - Opened by josiahseaman over 8 years ago
Labels: bug, minor

#4 - Updated Mouse Tracking for Nucleotide Index

Issue - State: closed - Opened by josiahseaman over 8 years ago
Labels: bug

#3 - Sharp lines on zoomed in pixels

Issue - State: closed - Opened by josiahseaman over 8 years ago - 1 comment
Labels: enhancement

#2 - New Tiled Layout

Issue - State: closed - Opened by josiahseaman over 8 years ago - 4 comments
Labels: enhancement

#1 - User Specified Column Width

Issue - State: closed - Opened by josiahseaman over 8 years ago
Labels: enhancement