joshwlambert/DAISIEprep issues and pull requests

#43 - min algorithm error when there are multiple samples of the same species, but only 1 of them is from the island

Issue - State: open - Opened by luislvalente about 2 months ago

#42 - Updt vignette

Pull Request - State: open - Opened by luislvalente about 2 months ago

#41 - Add warning that species on the checklist were not found on the tree

Issue - State: open - Opened by luislvalente about 2 months ago

#40 - min_age in add_island_colonist: how is it handled?

Issue - State: open - Opened by luislvalente about 2 months ago

#39 - Add logo to tutorial

Issue - State: open - Opened by luislvalente about 2 months ago - 3 comments

#38 - Load files in tutorial - is there a better way?

Issue - State: open - Opened by luislvalente about 2 months ago - 3 comments

#37 - Changed from quarto back to markdown

Pull Request - State: closed - Opened by luislvalente about 2 months ago

#36 - Nonendemic lineage gets converted to endemic

Issue - State: open - Opened by pepijnhelleman 4 months ago

#35 - Fix duplicate species in `island_tbl` bug

Pull Request - State: closed - Opened by joshwlambert 6 months ago
Labels: bug

#34 - Duplicated extracted species from `extract_island_species()`

Issue - State: closed - Opened by joshwlambert 7 months ago
Labels: bug

#33 - Release DAISIEprep 0.4.0

Issue - State: closed - Opened by joshwlambert 8 months ago - 1 comment

#32 - Enable more ASR options from {castor}

Issue - State: closed - Opened by joshwlambert 8 months ago
Labels: enhancement

#31 - Improve documentation for `add_island_colonist()`

Issue - State: closed - Opened by joshwlambert 10 months ago

#30 - Add error message when add species to non-existing clade

Issue - State: closed - Opened by luislvalente 11 months ago - 1 comment

#29 - Scale bar in phylogenies generated with plot_phylod()

Issue - State: open - Opened by luislvalente 11 months ago - 1 comment

#28 - Improve documentation of installation and package help

Pull Request - State: closed - Opened by joshwlambert 11 months ago

#27 - Add package documentation file

Issue - State: closed - Opened by joshwlambert 11 months ago
Labels: documentation

#26 - Incorrect install instructions

Issue - State: closed - Opened by joshwlambert 11 months ago
Labels: documentation

#25 - Remove remote dependency

Pull Request - State: closed - Opened by joshwlambert about 1 year ago - 1 comment

#24 - corHMM example in ASR vignette + fixed GeoSSE states to endemicity

Pull Request - State: closed - Opened by TheoPannetier over 1 year ago - 3 comments

#23 - Changes requested for the resubmission to CRAN

Pull Request - State: closed - Opened by joshwlambert over 1 year ago - 5 comments
Labels: CRAN

#22 - Exported functions need better examples

Issue - State: open - Opened by joshwlambert over 1 year ago
Labels: documentation

#21 - Prepare for CRAN submission

Pull Request - State: closed - Opened by joshwlambert over 1 year ago - 3 comments
Labels: release, CRAN

#20 - updated sensitivity results with script patch

Pull Request - State: closed - Opened by joshwlambert almost 2 years ago - 1 comment

#19 - Updates to vignettes

Pull Request - State: closed - Opened by joshwlambert almost 2 years ago - 1 comment
Labels: documentation, enhancement

#18 - Increasing test coverage and benchmark bug fix

Pull Request - State: closed - Opened by joshwlambert almost 2 years ago - 1 comment

#17 - `sse_states_to_endemicity()` and `endemicity_to_sse_states()` are non-symmetrical

Issue - State: closed - Opened by joshwlambert almost 2 years ago - 2 comments

#16 - Lots of updates for version release

Pull Request - State: closed - Opened by joshwlambert almost 2 years ago
Labels: enhancement

#15 - Updated sensitivty vignette

Pull Request - State: closed - Opened by joshwlambert almost 2 years ago
Labels: documentation, enhancement

#14 - Updates to vignettes and various functions

Pull Request - State: closed - Opened by joshwlambert almost 2 years ago
Labels: documentation, enhancement

#13 - update github action workflow

Pull Request - State: closed - Opened by joshwlambert almost 2 years ago
Labels: workflow_update

#12 - added more information about how to add missing species

Pull Request - State: closed - Opened by joshwlambert almost 2 years ago
Labels: documentation

#11 - `add_asr_node_states` does not work with Mk model yet

Issue - State: closed - Opened by TheoPannetier over 2 years ago
Labels: bug

#10 - Extending ASR vignette draft

Pull Request - State: closed - Opened by TheoPannetier over 2 years ago - 1 comment

#9 - `plot_phylod` is no longer working

Issue - State: closed - Opened by TheoPannetier over 2 years ago - 2 comments
Labels: bug

#8 - Consider switching endemicity to state encoding

Issue - State: closed - Opened by TheoPannetier over 2 years ago - 3 comments

#7 - Draft ASR vignette corHMM example

Issue - State: closed - Opened by TheoPannetier over 2 years ago - 1 comment

#6 - Finish ASR vignette BioGeoBEARS example

Issue - State: closed - Opened by TheoPannetier over 2 years ago - 2 comments

#5 - Draft ASR vignette diversitree example

Issue - State: closed - Opened by TheoPannetier over 2 years ago - 1 comment

#4 - Draft ASR vignette introduction section

Issue - State: closed - Opened by TheoPannetier over 2 years ago - 5 comments

#3 - Read ASR doc

Issue - State: closed - Opened by TheoPannetier over 2 years ago - 1 comment

#2 - `extract_island_species` also extracts a mainland species?

Issue - State: closed - Opened by TheoPannetier over 2 years ago - 3 comments
Labels: bug

#1 - Add Theo as a collaborator on the repo

Issue - State: closed - Opened by TheoPannetier over 2 years ago - 1 comment

GitHub / joshwlambert/DAISIEprep issues and pull requests