Ecosyste.ms: Issues

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GitHub / joshspeagle/dynesty issues and pull requests

#482 - Fix merging of runs

Pull Request - State: closed - Opened by segasai about 1 month ago - 1 comment

#481 - Not possible to merge runs with different number of batches

Issue - State: closed - Opened by rodleiva about 1 month ago - 4 comments
Labels: bug

#480 - Partition function of Lennard-Jones potential expected compute time

Issue - State: closed - Opened by Binbose about 1 month ago
Labels: question

#479 - Pool crashes in foor loop with "OSError: [Errno 24] Too many open files"

Issue - State: closed - Opened by bencebecsy 3 months ago - 2 comments
Labels: bug

#478 - Replace x.ptp() with np.ptp(x)

Pull Request - State: closed - Opened by joezuntz 3 months ago - 3 comments

#477 - Corrected emcee link in Getting Started Page doc

Pull Request - State: closed - Opened by rakaar 4 months ago - 1 comment

#476 - log means log_e or log_10?

Issue - State: closed - Opened by Sunnnsh 5 months ago - 1 comment
Labels: question

#475 - blob issues when add_live

Issue - State: closed - Opened by carlosRmelo 5 months ago - 4 comments
Labels: question

#474 - Using weighted samples

Issue - State: closed - Opened by ZcharlieZ 7 months ago - 3 comments
Labels: question

#473 - Run-to-run instability of logZ

Issue - State: closed - Opened by asmasca 8 months ago - 8 comments
Labels: question

#472 - Doubt on sampling methods

Issue - State: closed - Opened by ZcharlieZ 8 months ago - 7 comments
Labels: question

#471 - Parallel uniform sampling

Pull Request - State: open - Opened by segasai 8 months ago - 7 comments

#470 - How to access posteriors?

Issue - State: closed - Opened by mkplummer 8 months ago - 1 comment
Labels: question

#469 - Importance weight PDF shape

Issue - State: closed - Opened by tjtakys 8 months ago - 4 comments
Labels: question

#468 - Loglstar and logZ values

Issue - State: closed - Opened by ZcharlieZ 8 months ago - 1 comment
Labels: question

#467 - Convergence testing with distance travelled

Pull Request - State: open - Opened by ColmTalbot 9 months ago - 5 comments

#466 - Pool args fix

Pull Request - State: closed - Opened by segasai 10 months ago - 2 comments

#465 - add missing h in docs front page

Pull Request - State: closed - Opened by eteq 10 months ago - 1 comment

#464 - Fix pool docs to clarify the sampler should not get its own args/kwargs

Pull Request - State: closed - Opened by eteq 10 months ago - 4 comments

#463 - Discretised prior in Dynesty

Issue - State: closed - Opened by FengqiuAdamDong 10 months ago - 7 comments
Labels: question

#462 - tqdm example

Issue - State: closed - Opened by jiespinozar 10 months ago - 4 comments
Labels: question

#461 - Ellipsoid check failed

Issue - State: closed - Opened by akashgpt 11 months ago - 2 comments
Labels: bug

#460 - Periodic parameters improvement by rotating them

Issue - State: open - Opened by segasai 11 months ago
Labels: enhancement, help wanted, question

#459 - Questions about DynamicNestedSampler setting

Issue - State: closed - Opened by gwwydru 11 months ago - 4 comments
Labels: question

#458 - Questions about dyplot.cornerplot

Issue - State: closed - Opened by Sunnnsh 11 months ago - 4 comments
Labels: question

#457 - get rid of npdim

Pull Request - State: closed - Opened by segasai 11 months ago - 2 comments

#456 - Using dynesty with npdim

Issue - State: closed - Opened by MichaelDAlbrow 11 months ago - 8 comments
Labels: bug

#455 - Importing Nested Sampling chains from file to plot

Issue - State: closed - Opened by BorisDeletic 12 months ago - 2 comments
Labels: question

#453 - live point's likelihood not valid

Issue - State: open - Opened by npassaleva about 1 year ago - 2 comments
Labels: question

#452 - An issue about dynesty posterior

Issue - State: closed - Opened by wdqfdr about 1 year ago - 6 comments
Labels: question

#451 - Recover partial chains from the dynesty.save checkpoint file

Issue - State: closed - Opened by npassaleva about 1 year ago
Labels: question

#450 - Renaming pickle file from .tmp to .pickle in save_sampler() fails in Windows.

Issue - State: closed - Opened by rodleiva about 1 year ago - 2 comments
Labels: bug

#449 - How to get the MAP from chains?

Issue - State: closed - Opened by epaillas about 1 year ago - 3 comments
Labels: question

#448 - An issue about dyplot

Issue - State: closed - Opened by Krowkosy about 1 year ago - 1 comment
Labels: question

#447 - The loglstar is always -inf<-inf<inf

Issue - State: closed - Opened by Sunnnsh over 1 year ago - 3 comments
Labels: question

#446 - multi-GPU parallellzation

Issue - State: closed - Opened by simoncasassus over 1 year ago - 2 comments
Labels: question

#445 - "acceptance walk" implementation in the sampling methods?

Issue - State: closed - Opened by lalit-pathak over 1 year ago - 1 comment
Labels: question

#444 - Resuming pooled sampler with pool doesn't use the pool

Issue - State: closed - Opened by OGdodge over 1 year ago - 3 comments
Labels: bug

#443 - Boundary updates

Pull Request - State: closed - Opened by segasai over 1 year ago - 4 comments

#442 - fix a factor of 2 in the BIC calculation

Pull Request - State: closed - Opened by segasai over 1 year ago - 1 comment

#441 - Put a warning if bootstrap enlarge factors are large

Issue - State: closed - Opened by segasai over 1 year ago - 1 comment
Labels: enhancement

#440 - issue with weights and posteriors comparing v0.9.5.3 and v2.1.1

Issue - State: closed - Opened by mmfausnaugh over 1 year ago - 12 comments
Labels: bug

#439 - fix the resuming of dynamic nested sampler runs with the pool

Pull Request - State: closed - Opened by segasai over 1 year ago - 4 comments

#438 - Dynesty dynamic sample resuming from checkpoint does not use pool

Issue - State: closed - Opened by segasai over 1 year ago - 1 comment
Labels: bug

#437 - Best way of using MAP/ML point when fitting

Issue - State: open - Opened by segasai over 1 year ago - 4 comments
Labels: help wanted, question

#436 - Unable to load previous run during batch stage?

Issue - State: closed - Opened by ajw278 over 1 year ago - 12 comments
Labels: question

#435 - marginally failing highdim test for ndim=30 and rwalk

Issue - State: closed - Opened by segasai over 1 year ago
Labels: bug

#434 - Boundary updates

Issue - State: open - Opened by segasai over 1 year ago
Labels: enhancement, help wanted, question

#433 - Errors in declaring checkpoint file.

Issue - State: closed - Opened by Buding820 over 1 year ago - 2 comments
Labels: question

#432 - Tracking the performance of dynesty

Issue - State: open - Opened by segasai over 1 year ago
Labels: enhancement, help wanted

#431 - No bounds update and fixed number of calls each iteration

Issue - State: closed - Opened by ajw278 over 1 year ago - 12 comments
Labels: bug

#430 - Specify lower bound of `L_max`

Issue - State: closed - Opened by dilpath over 1 year ago - 4 comments
Labels: question

#429 - Can multiprocessing pools be used?

Issue - State: closed - Opened by shoepfl over 1 year ago - 8 comments
Labels: question

#428 - Fixes to bounding updates

Pull Request - State: closed - Opened by segasai over 1 year ago - 5 comments

#427 - Bounding fixes

Issue - State: closed - Opened by segasai over 1 year ago - 5 comments
Labels: bug

#426 - Implementing an elliptical slice sampler

Issue - State: closed - Opened by mvsoom over 1 year ago - 2 comments
Labels: question

#425 - Parallelization issue with "unif" sampler

Issue - State: closed - Opened by MikhailBeznogov over 1 year ago - 8 comments

#424 - Crashes on few live points

Issue - State: closed - Opened by frgsimpson over 1 year ago - 6 comments
Labels: bug

#423 - Motivated choice for dlogz

Issue - State: open - Opened by segasai over 1 year ago - 3 comments
Labels: enhancement, question

#422 - Robustness of posterior estimation

Issue - State: closed - Opened by MikhailBeznogov over 1 year ago - 5 comments

#421 - Using dyplot via importing samples

Issue - State: closed - Opened by camarman almost 2 years ago - 4 comments
Labels: question

#420 - Get (metadata of) nearby live points?

Issue - State: closed - Opened by mvsoom almost 2 years ago - 4 comments
Labels: question

#419 - Replace `pickle` with `dill` as `pickle_module` in `dynesty/utils.py`

Issue - State: closed - Opened by dilpath almost 2 years ago - 2 comments
Labels: enhancement

#418 - Access index of original samples in resampled chain

Issue - State: closed - Opened by dilpath almost 2 years ago - 2 comments
Labels: question

#417 - fix the hanging ci due to pool/coverage interaction

Pull Request - State: closed - Opened by segasai almost 2 years ago - 1 comment

#416 - Fixing batch sampling

Pull Request - State: closed - Opened by segasai almost 2 years ago - 3 comments

#415 - Massive performance bug with dynamic sampling

Issue - State: closed - Opened by segasai almost 2 years ago - 3 comments
Labels: bug

#414 - first attempt to be able to deal with plateaus

Pull Request - State: closed - Opened by segasai almost 2 years ago - 13 comments

#412 - log(z) is incorrect when some initial samples have log(L)=-inf

Issue - State: closed - Opened by segasai almost 2 years ago
Labels: bug

#411 - Implementing NUTS sampler

Issue - State: open - Opened by segasai almost 2 years ago
Labels: question

#410 - Usefulness of reflective/periodic dimensions

Issue - State: open - Opened by segasai almost 2 years ago - 2 comments
Labels: question

#409 - Running multi-threaded dynesty across nodes on a cluster

Issue - State: closed - Opened by shantanu9847 almost 2 years ago - 3 comments
Labels: question

#408 - Make resample_equal shuffle the array

Issue - State: closed - Opened by segasai almost 2 years ago - 2 comments
Labels: question

#407 - Make resample_equal return shuffled array

Issue - State: closed - Opened by segasai almost 2 years ago
Labels: question

#406 - checkpoint does not allow for modules to be passed to sampler

Issue - State: closed - Opened by a-lhn almost 2 years ago - 4 comments
Labels: not a bug, question

#405 - DynestyDynamic sampler not creating checkpoint file

Issue - State: closed - Opened by Jammy2211 almost 2 years ago - 9 comments
Labels: bug

#404 - Assessing the results by varying the Dynesty parameters.

Issue - State: closed - Opened by camarman almost 2 years ago - 2 comments
Labels: question

#403 - Resumed pooled dynamic nested sampler will not cache prior transform?

Issue - State: closed - Opened by OGdodge almost 2 years ago - 3 comments
Labels: bug

#402 - fix the code of custom samplers/updaters

Pull Request - State: closed - Opened by segasai almost 2 years ago - 2 comments

#401 - Resolve some issues when using custom sampler

Pull Request - State: closed - Opened by ColmTalbot almost 2 years ago - 4 comments

#400 - refactor sampling to make the arguments namedtuple

Pull Request - State: closed - Opened by segasai almost 2 years ago - 1 comment

#399 - Fix MC volume calculations

Pull Request - State: closed - Opened by segasai about 2 years ago - 1 comment

#398 - Broken Monte-Carlo volume calculations

Issue - State: closed - Opened by segasai about 2 years ago - 1 comment
Labels: bug

#397 - Bounding update, getting rid of cholesky transform

Pull Request - State: closed - Opened by segasai about 2 years ago - 1 comment

#396 - assert q > 0 # Should never fail AssertionError

Issue - State: closed - Opened by a-lhn about 2 years ago - 4 comments
Labels: bug

#395 - Allow saving additional information returned by the likelihood function

Pull Request - State: closed - Opened by segasai about 2 years ago - 3 comments

#394 - add a dynesty pool

Pull Request - State: closed - Opened by segasai about 2 years ago - 2 comments

#393 - Special multiprocessing pool to avoid pickle overhead

Issue - State: closed - Opened by segasai about 2 years ago - 1 comment
Labels: enhancement

#392 - Bug with maxiter/maxcall and dynamic sampling

Pull Request - State: closed - Opened by segasai about 2 years ago - 1 comment

#391 - Generic sampler interface

Issue - State: open - Opened by segasai about 2 years ago - 4 comments
Labels: enhancement

#390 - Results interface

Pull Request - State: closed - Opened by segasai about 2 years ago - 4 comments
Labels: enhancement

#389 - Slice expand

Pull Request - State: closed - Opened by segasai about 2 years ago - 1 comment

#388 - Problem getting multi-threading to work in dynesty

Issue - State: closed - Opened by shantanu9847 about 2 years ago - 4 comments

#387 - DynamicNestedSampler as a class

Issue - State: closed - Opened by segasai about 2 years ago - 3 comments

#386 - Resuming of interrupted runs

Pull Request - State: closed - Opened by segasai about 2 years ago - 7 comments
Labels: new feature

#385 - Proposal update change

Pull Request - State: closed - Opened by segasai about 2 years ago - 1 comment

#384 - improve the rwalk behaviour for difficult cases.

Pull Request - State: closed - Opened by segasai about 2 years ago - 2 comments

#383 - Setting queue_size

Issue - State: closed - Opened by segasai about 2 years ago - 2 comments
Labels: not a bug, docs/coverage/tests

#382 - Doubling steps with slice sampler

Pull Request - State: closed - Opened by segasai about 2 years ago - 7 comments

#381 - dynesty 1.2.3 issue changes values of weights compared to 0.9.5.3

Issue - State: closed - Opened by mmfausnaugh about 2 years ago - 6 comments
Labels: question, unclear