jonesor/Rcompadre issues and pull requests

#143 - error correction and rebuild

Pull Request - State: closed - Opened by jonesor about 1 year ago

#142 - popbio should be popdemo

Issue - State: closed - Opened by bramdhondt about 1 year ago - 1 comment

#141 - cdb_rbind improvement

Issue - State: open - Opened by jonesor over 1 year ago

#140 - Main

Pull Request - State: closed - Opened by jonesor over 1 year ago

#139 - Devel

Pull Request - State: closed - Opened by jonesor over 1 year ago

#138 - Combine different mpm summaries into one function.

Pull Request - State: closed - Opened by darrennorris over 1 year ago - 1 comment

#137 - 2 small taxonomic inconsistencies for crocodiles and turtles?

Issue - State: open - Opened by darrennorris almost 2 years ago - 1 comment

#136 - suggestion for additional calculations across matrices: mat_sd and mat_median

Issue - State: closed - Opened by darrennorris almost 2 years ago - 2 comments

#135 - main to level

Pull Request - State: closed - Opened by jonesor almost 2 years ago

#134 - Devel

Pull Request - State: closed - Opened by jonesor about 2 years ago

#133 - add methods for CompadreDB objects or supress helper text

Issue - State: open - Opened by wpetry about 2 years ago - 2 comments
Labels: enhancement, help wanted

#132 - Devel

Pull Request - State: closed - Opened by jonesor over 3 years ago

#131 - Main to devel

Pull Request - State: closed - Opened by jonesor over 3 years ago

#130 - Devel

Pull Request - State: closed - Opened by jonesor over 3 years ago

#129 - Standardize case convention on database column names

Issue - State: open - Opened by wpetry over 3 years ago - 1 comment

#128 - Devel

Pull Request - State: closed - Opened by jonesor over 3 years ago

#127 - Add unit tests to cdb_build_cdb

Issue - State: open - Opened by jonesor over 3 years ago

#126 - Add vignette with NO piping

Issue - State: closed - Opened by jonesor over 3 years ago - 1 comment

#125 - Add argument to cdb_fetch to automatically add error flag columns

Issue - State: closed - Opened by jonesor over 3 years ago - 1 comment

#124 - Devel

Pull Request - State: closed - Opened by jonesor over 3 years ago

#123 - Improve vignette to illustrate cdb_build_cdb functionality

Issue - State: closed - Opened by jonesor over 3 years ago

#122 - filter error when compiling vignette. Error in storage.mode(x) <- "double" :

Issue - State: open - Opened by jonesor over 3 years ago
Labels: bug, help wanted

#121 - mat_to_string fails when whole matrix is NA

Issue - State: open - Opened by jonesor over 3 years ago - 1 comment
Labels: bug

#120 - cdb_rbind - allow binding of COMPADRE objects with different metadata.

Issue - State: open - Opened by jonesor over 3 years ago
Labels: enhancement, help wanted

#119 - Write vignette to illustrate `cdb_build_cdb` functionality

Issue - State: closed - Opened by jonesor over 3 years ago - 1 comment
Labels: devel-resolved

#118 - Own data fn

Pull Request - State: closed - Opened by jonesor over 3 years ago

#117 - Devel

Pull Request - State: closed - Opened by jonesor over 3 years ago

#116 - Fix license and description

Pull Request - State: closed - Opened by jonesor over 3 years ago

#115 - Pull in addition of cdb_build_cdb function

Pull Request - State: closed - Opened by jonesor over 3 years ago

#114 - Add function to create CompadreDB object from matrices and metadata.

Issue - State: closed - Opened by jonesor over 3 years ago - 2 comments
Labels: devel-resolved

#113 - Added downloads badge, rebuilt site.

Pull Request - State: closed - Opened by jonesor over 3 years ago

#112 - Pull changes from main to devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#111 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#110 - Bringing in modifications made to main, to devel.

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#109 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#108 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#107 - Accidentally pushed to main, now adding those changes to devel.

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#106 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#105 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#104 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#103 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#102 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#101 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#100 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#99 - Add method for droplevels

Issue - State: open - Opened by jonesor almost 4 years ago
Labels: help wanted

#98 - Check that Rcompadre works well with the old database versions

Issue - State: closed - Opened by jonesor almost 4 years ago - 1 comment
Labels: help wanted

#97 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#96 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#95 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#94 - Change name of matrixClass to MatrixClass for consistency

Issue - State: closed - Opened by jonesor almost 4 years ago - 4 comments

#93 - Function to load local com(p)adre .Rdata files

Issue - State: closed - Opened by wpetry almost 4 years ago - 3 comments
Labels: enhancement

#92 - Add a function to output a Matlab compatible data file

Issue - State: open - Opened by jonesor almost 4 years ago
Labels: enhancement, help wanted

#91 - Devel (fixes formatting of news.md)

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#90 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#89 - Update download message text

Issue - State: closed - Opened by jonesor almost 4 years ago - 1 comment

#88 - Add functionality to obtain particular historic database versions via version number.

Issue - State: open - Opened by jonesor almost 4 years ago
Labels: enhancement

#87 - Update of CI yml files to reflect branch name change (master -> main)

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#86 - Devel (following renaming of master -> main)

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#85 - Add function example to vignettes

Issue - State: open - Opened by jonesor almost 4 years ago

#84 - Rename master branch

Issue - State: closed - Opened by iainmstott almost 4 years ago - 2 comments

#83 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#82 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#81 - Add news.md file

Issue - State: closed - Opened by jonesor almost 4 years ago - 1 comment

#80 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#79 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#78 - Function to create a valid CompadreDB/CompadreMat object from user-supplied matrices

Issue - State: closed - Opened by jonesor almost 4 years ago - 1 comment
Labels: enhancement, help wanted, devel-resolved

#77 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#76 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#75 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#74 - Add check for survival probability >1 to cdb_check

Issue - State: closed - Opened by jonesor almost 4 years ago - 1 comment
Labels: good first issue

#73 - Grouping functions by type (@family tag)

Issue - State: closed - Opened by jonesor almost 4 years ago - 1 comment

#72 - Update DESCRIPTION

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#71 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#70 - Check and if necessary add contributor names to DESCRIPTION

Issue - State: closed - Opened by jonesor almost 4 years ago - 1 comment
Labels: help wanted

#69 - Add github action to automatically build site

Issue - State: closed - Opened by jonesor almost 4 years ago - 1 comment

#68 - Bringing devel up to date with changes on master

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#67 - Add into vignette example to get 1 matrix per study/species at random

Issue - State: closed - Opened by jonesor almost 4 years ago - 1 comment

#66 - Matrix accessor functions should add rownames with stage names to the matrices

Issue - State: closed - Opened by jonesor almost 4 years ago - 1 comment
Labels: devel-resolved

#65 - add spellcheck test & fix errors caught

Pull Request - State: closed - Opened by wpetry almost 4 years ago - 2 comments

#64 - Devel

Pull Request - State: closed - Opened by jonesor almost 4 years ago

#63 - get tidyverse methods working again

Pull Request - State: closed - Opened by levisc8 almost 4 years ago - 3 comments

#62 - Add dplyr::summarize, and edit Number_ fns to check for required cols

Pull Request - State: closed - Opened by patrickbarks over 5 years ago

#61 - adding cdb_metadata function and test

Pull Request - State: closed - Opened by GesaRoemer over 5 years ago - 3 comments

#60 - new function to extract metadata

Issue - State: closed - Opened by GesaRoemer over 5 years ago - 1 comment

#59 - as_cdb bug?

Issue - State: closed - Opened by jonesor over 5 years ago - 2 comments
Labels: bug

#58 - matrix accessor functions return lists for all CompadreDB objects

Issue - State: closed - Opened by iainmstott over 5 years ago - 2 comments

#57 - Add dplyr::summarize method?

Issue - State: closed - Opened by patrickbarks almost 6 years ago

#56 - Cryptic warning msg if db doesn't have SpeciesAccepted column

Issue - State: closed - Opened by patrickbarks almost 6 years ago

#55 - Align devel with master

Pull Request - State: closed - Opened by patrickbarks about 6 years ago - 1 comment

#54 - Age from stage vignette

Pull Request - State: closed - Opened by patrickbarks about 6 years ago - 4 comments

#53 - Vignette on vectorizing with Rcompadre

Issue - State: closed - Opened by patrickbarks about 6 years ago - 2 comments

#52 - 'Polishing' edits to recently-added functions

Pull Request - State: closed - Opened by patrickbarks about 6 years ago - 2 comments

#51 - Add brief overview of tibbles to documentation

Issue - State: closed - Opened by patrickbarks about 6 years ago - 1 comment
Labels: devel-resolved

#50 - Online documentation

Issue - State: closed - Opened by patrickbarks about 6 years ago - 8 comments

#49 - Help users avoid pseudoreplication

Issue - State: closed - Opened by patrickbarks about 6 years ago - 1 comment

#48 - Change fn names to object_verb format, and add ggplot method

Pull Request - State: closed - Opened by patrickbarks about 6 years ago - 3 comments

GitHub / jonesor/Rcompadre issues and pull requests