jonas-fuchs/varVAMP issues and pull requests

#42 - Changed bed file structure to ARTICv3

Pull Request - State: closed - Opened by jonas-fuchs about 1 month ago - 1 comment
Labels: enhancement

#41 - add option to enforce a primerscheme compatible bed output.

Issue - State: closed - Opened by jonas-fuchs about 1 month ago

#40 - updated doku

Pull Request - State: closed - Opened by jonas-fuchs 5 months ago

#39 - Fixes to BLAST functionality and refactoring

Pull Request - State: closed - Opened by wm75 5 months ago - 3 comments
Labels: enhancement

#38 - fixed qpcr type error

Pull Request - State: closed - Opened by jonas-fuchs 5 months ago
Labels: bug

#37 - Combination of qPCR and BLAST db fails

Issue - State: closed - Opened by elischberg 6 months ago - 2 comments

#36 - Bug fixes

Pull Request - State: closed - Opened by jonas-fuchs 6 months ago
Labels: bug

#35 - END_OVERLAP config setting not getting logged

Issue - State: closed - Opened by wm75 8 months ago - 2 comments

#34 - Qpcr blast fix

Pull Request - State: closed - Opened by jonas-fuchs 8 months ago

#33 - Problem combining qpcr mode with primer blast

Issue - State: closed - Opened by wm75 8 months ago - 3 comments

#32 - Call blastn directly instead of through Biopython

Pull Request - State: closed - Opened by wm75 9 months ago - 1 comment

#31 - Warning about deprecated Biopython functionality

Issue - State: closed - Opened by wm75 9 months ago - 1 comment

#30 - better renaming for primers

Pull Request - State: closed - Opened by jonas-fuchs 9 months ago

#29 - Document recent changes around config files

Pull Request - State: closed - Opened by wm75 9 months ago

#28 - Enable custom config modules specified via $VARVAMP_CONFIG

Pull Request - State: closed - Opened by wm75 9 months ago - 3 comments

#27 - Fix some links in README and documentation

Pull Request - State: closed - Opened by wm75 9 months ago

#26 - Fix --threads argument in combination with -db

Pull Request - State: closed - Opened by wm75 9 months ago

#25 - changed sanger to single

Pull Request - State: closed - Opened by jonas-fuchs 10 months ago

#24 - Sanger to single

Pull Request - State: closed - Opened by jonas-fuchs 10 months ago

#23 - Publication ready version

Pull Request - State: closed - Opened by jonas-fuchs 10 months ago

#22 - Correct entropy

Pull Request - State: closed - Opened by jonas-fuchs 11 months ago

#21 - Further tweaks

Pull Request - State: closed - Opened by jonas-fuchs 12 months ago

#20 - Extended dimer eval qpcr

Pull Request - State: closed - Opened by jonas-fuchs about 1 year ago

#19 - Multiprocess

Pull Request - State: closed - Opened by jonas-fuchs about 1 year ago

#18 - Blast qpcr

Pull Request - State: closed - Opened by jonas-fuchs about 1 year ago

#17 - sequence length check

Pull Request - State: closed - Opened by jonas-fuchs about 1 year ago

#16 - Blas tfix

Pull Request - State: closed - Opened by jonas-fuchs about 1 year ago