Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / jokergoo/circlize issues and pull requests

#401 - Unclear from guide how to use data as in examples

Issue - State: closed - Opened by rbutleriii 4 months ago - 2 comments

#400 - How do we control the distance between text labels and the circle

Issue - State: open - Opened by TomHsiung 5 months ago - 2 comments

#397 - chordDiagram fail to recongize all section

Issue - State: open - Opened by mliu86 6 months ago

#396 - How to keep branches of dendrogram between sectors

Issue - State: open - Opened by ayeTown 7 months ago - 1 comment

#393 - problem with circle.margin

Issue - State: open - Opened by onmyojiyys 8 months ago

#392 - ecDNA plot

Issue - State: open - Opened by l0ka 8 months ago

#391 - Blog posts links are dead

Issue - State: open - Opened by artur-sannikov 8 months ago

#388 - How to use circos.labels with chordDiagram?

Issue - State: open - Opened by mhoban 9 months ago - 1 comment

#387 - add chr on ideogram

Issue - State: open - Opened by lmanchon 11 months ago

#386 - Points with error bars

Issue - State: open - Opened by bennydeslandes 11 months ago - 2 comments

#385 - I can't get bed files to be annotated on my circos.plot

Issue - State: closed - Opened by mah238 11 months ago

#384 - Label repel

Issue - State: open - Opened by nfancy 12 months ago

#383 - Merging sectors on a different track index

Issue - State: closed - Opened by nfancy 12 months ago - 1 comment

#382 - Data won't plot using circos.genomicHeatmap

Issue - State: closed - Opened by 09herbej about 1 year ago - 1 comment

#381 - #

Issue - State: open - Opened by EvoScripter about 1 year ago

#379 - How to display the raw values on each heatmap？

Issue - State: open - Opened by Rensiyu1128 over 1 year ago

#377 - Error: not enough space for calls at track index

Issue - State: open - Opened by evoJDG over 1 year ago

#376 - font size in chordDiagram

Issue - State: open - Opened by biraizoz over 1 year ago - 1 comment

#375 - genomicDensity on the outside

Issue - State: open - Opened by mbassalbioinformatics over 1 year ago

#374 - Problems with colors in circlize

Issue - State: open - Opened by hellebaa over 1 year ago

#373 - point is out of plotting region in sector

Issue - State: closed - Opened by KathleenYasmin almost 2 years ago

#372 - chordDiagram unable to plot all sectors

Issue - State: open - Opened by arushimahajan almost 2 years ago

#370 - error: could not find function "cm_y"

Issue - State: open - Opened by ShuqingL almost 2 years ago - 1 comment

#369 - Standardising width of links irrespective of track size

Issue - State: open - Opened by nhgopee almost 2 years ago - 1 comment

#368 - genomicDensity()

Issue - State: open - Opened by jokergoo almost 2 years ago - 1 comment

#367 - circos.axis major.at and labels

Issue - State: closed - Opened by coffeeCowLu almost 2 years ago

#366 - Any way to overlap rectangle plot and density plot in same track?

Issue - State: open - Opened by rpugho almost 2 years ago - 1 comment

#365 - Error: Length of data and length of factors differ.

Issue - State: open - Opened by isunshine-cc almost 2 years ago

#364 - Adding background lines to genomicDensity()

Issue - State: closed - Opened by elcortegano almost 2 years ago - 2 comments

#362 - circos.par is not working

Issue - State: open - Opened by tuntscha about 2 years ago - 7 comments

#361 - How to add a error bar to circos.barplot?

Issue - State: closed - Opened by liujilei156231 about 2 years ago - 4 comments

#360 - circos.genomicLabels perpendicular to line

Issue - State: open - Opened by ghs101 about 2 years ago - 1 comment

#359 - Adding a unique sector with axis labels

Issue - State: open - Opened by sarahfrail about 2 years ago - 2 comments

#358 - Is there any way to overlap ribbons?

Issue - State: open - Opened by jianlinyang about 2 years ago - 1 comment

#357 - Strange anti-overlap reaction with circos.labels

Issue - State: closed - Opened by Glastos about 2 years ago - 3 comments

#356 - Problem installing circlize

Issue - State: open - Opened by marre1991 about 2 years ago - 1 comment

#355 - Hiding chromosome sector on single genomic track

Issue - State: open - Opened by kitscorp about 2 years ago - 1 comment

#354 - try to do this

Issue - State: open - Opened by zhipengliu92 about 2 years ago - 1 comment

#353 - Sector colors

Issue - State: open - Opened by syuxuan about 2 years ago - 1 comment

#352 - the radius of the circle

Issue - State: open - Opened by ryrl9703 about 2 years ago - 2 comments

#351 - 想请教关于文本注释的问题

Issue - State: open - Opened by ling9802 about 2 years ago - 2 comments

#350 - Change default canvas background color

Issue - State: open - Opened by JingxuanBao about 2 years ago - 1 comment

#349 - stacked text

Issue - State: open - Opened by jokergoo about 2 years ago

#348 - Last chromosome not showing density

Issue - State: closed - Opened by LandiMi2 about 2 years ago

#347 - issue with the FUN circos.genomicLabels

Issue - State: closed - Opened by edoardobertolini about 2 years ago - 1 comment

#346 - Track

Issue - State: closed - Opened by medbenamine over 2 years ago - 3 comments

#345 - Points out of plotting region with circos.barplot

Issue - State: closed - Opened by yaaminiv over 2 years ago - 4 comments

#342 - Can we plot SNPs on a circos plot ?

Issue - State: open - Opened by Krithika-Bhuvan over 2 years ago - 3 comments

#340 - reducing gap with set_gap_track issue

Issue - State: closed - Opened by avnd6 over 2 years ago - 2 comments

#339 - integrate chordDiagram() with ggdraw function to combine ggplot objects

Issue - State: open - Opened by zh-zhang1984 over 2 years ago - 4 comments

#337 - chordDiagram example error

Issue - State: open - Opened by lmckinno over 2 years ago - 1 comment

#336 - Offsetting block/chromosome labelling

Issue - State: open - Opened by mrmrwinter over 2 years ago - 2 comments

#334 - About the line type in function circos.segments

Issue - State: open - Opened by nzx9581 over 2 years ago - 1 comment

#333 - circular heatmap order

Issue - State: closed - Opened by jokergoo over 2 years ago

#332 - Is there a way to label `circos.link` automatically?

Issue - State: open - Opened by ms-gx over 2 years ago - 5 comments

#331 - Can I add circos.labels to circos.heatmap?

Issue - State: closed - Opened by lbwfff over 2 years ago - 6 comments

#330 - error installing... unmatched bracket in chordDiagram.R

Issue - State: closed - Opened by yerahko over 2 years ago - 2 comments

#329 - Stacked circlize plot divided in half - help needed

Issue - State: closed - Opened by Mieszkol over 2 years ago - 1 comment

#328 - Wrap text of sectors names in order not to be cut off

Issue - State: open - Opened by elpavlos over 2 years ago - 4 comments

#326 - data is two columns and more than 10 rows

Issue - State: open - Opened by slx92 over 2 years ago - 1 comment

#325 - Unable to plot bargraphs with unequal number of samples per sector

Issue - State: open - Opened by anubhabkhan over 2 years ago - 1 comment

#324 - to-do list 2022-06-10

Issue - State: open - Opened by jokergoo over 2 years ago - 1 comment

#323 - How to rotate and do not close my circos plot,like this

Issue - State: open - Opened by zhipengliu92 over 2 years ago - 2 comments

#322 - Circular genome labels wrap on larger genomes

Issue - State: open - Opened by Benjamin-Lee over 2 years ago - 2 comments

#321 - Multiple links between two chromosomes

Issue - State: closed - Opened by kushalsuryamohan over 2 years ago - 3 comments

#320 - There is no space to allocate sectors.

Issue - State: closed - Opened by syj1997104 over 2 years ago - 4 comments

#319 - calc_gap() when it is not a two-group chord diagram

Issue - State: closed - Opened by jokergoo over 2 years ago

#317 - Increase cell.border width

Issue - State: closed - Opened by komalsrathi over 2 years ago - 1 comment

#316 - Plotting from a circ object to a specified path

Issue - State: closed - Opened by ZheFrench over 2 years ago - 1 comment

#315 - GenomicLabels clumped together

Issue - State: closed - Opened by jinghuazhao almost 3 years ago - 12 comments

#314 - circos.genomicRect border thickness

Issue - State: open - Opened by Lew619 almost 3 years ago - 1 comment

#313 - chordDiagram: Color gradients between groups

Issue - State: closed - Opened by LeclercqNico almost 3 years ago - 4 comments

#312 - Error: range of `ylim` should be different.

Issue - State: closed - Opened by ShixiangWang almost 3 years ago - 2 comments

#311 - Can plot genemiclabel outside the circos?

Issue - State: closed - Opened by ShixiangWang almost 3 years ago - 1 comment

#310 - cannot xtfrm data frames warning with links

Issue - State: closed - Opened by gungorbudak almost 3 years ago - 3 comments

#309 - Color vector in circos.lines not working

Issue - State: closed - Opened by cgrootcrego almost 3 years ago - 3 comments

#308 - In circos.heatmap, support border.color as a vector

Issue - State: closed - Opened by jokergoo almost 3 years ago

#307 - Add different border color to each sector in circos.heatmap

Issue - State: closed - Opened by komalsrathi almost 3 years ago - 8 comments

#306 - How do I add gaps between individual cells in the heatmap?

Issue - State: closed - Opened by komalsrathi almost 3 years ago - 2 comments

#305 - hcl_palette not working in circlize 0.4.14

Issue - State: closed - Opened by lorbaer almost 3 years ago - 2 comments

#304 - How to change the angle of the sector labels?

Issue - State: closed - Opened by komalsrathi almost 3 years ago - 2 comments

#300 - circos.genomicLabels() weird labels positions

Issue - State: closed - Opened by DrOnions almost 3 years ago - 14 comments

#299 - Circos.heatmap not displaying zero values

Issue - State: closed - Opened by Rob-murphys almost 3 years ago - 2 comments

#298 - highlight.sector works weird in a symmetrical matrix base chordDiagram

Issue - State: closed - Opened by xiayh17 almost 3 years ago - 2 comments

#297 - Increase gap between the ends of the circular heatmap , print Column name

Issue - State: closed - Opened by W-o-A almost 3 years ago - 1 comment