Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / jokergoo/ComplexHeatmap issues and pull requests

#100 - legend_param should support modifying only one legend

Issue - State: closed - Opened by jokergoo about 7 years ago

#99 - nested call to png() make errors when use_raster = TRUE

Issue - State: closed - Opened by jokergoo about 7 years ago - 1 comment

#98 - legend labels are wrong when putting in multiple columns

Issue - State: closed - Opened by jokergoo about 7 years ago - 1 comment

#97 - rowAnnotations and legend colors do not match

Issue - State: closed - Opened by sbamin about 7 years ago - 2 comments

#96 - densityHeatmap: add argument for `n`

Issue - State: closed - Opened by jokergoo about 7 years ago

#95 - How to add a custom HeatmapAnnotation to rows in the oncoprint() funciton?

Issue - State: closed - Opened by mpschr about 7 years ago - 3 comments

#94 - oncoprint: also remove empty rows

Issue - State: closed - Opened by jokergoo about 7 years ago

#93 - add anno_base() or anno_raster()

Issue - State: closed - Opened by jokergoo about 7 years ago

#92 - use gridGraphics package

Issue - State: closed - Opened by jokergoo about 7 years ago

#91 - non-numeric argument to binary operator

Issue - State: closed - Opened by ATVincent about 7 years ago - 7 comments

#89 - Row order when using row_anno_link

Issue - State: closed - Opened by dolevrahat about 7 years ago - 6 comments

#88 - have two heatmap aligned vertically

Issue - State: closed - Opened by LuyiTian about 7 years ago - 5 comments

#87 - legends not repeated for duplicated annotation names

Issue - State: closed - Opened by jokergoo about 7 years ago

#86 - vectorize oncoprint

Issue - State: closed - Opened by jokergoo about 7 years ago - 1 comment

#85 - use matrix as column annotation

Issue - State: closed - Opened by jokergoo about 7 years ago

#84 - legend_direction = "horizontal" does not work when running on shiny server

Issue - State: closed - Opened by jsimonas about 7 years ago - 1 comment

#83 - trend annotation of clusters

Issue - State: closed - Opened by ebioman about 7 years ago - 2 comments

#82 - How to make continuous legend symmetric?

Issue - State: closed - Opened by nachocab over 7 years ago - 9 comments

#81 - anno_link not working on large heatmaps

Issue - State: closed - Opened by nachocab over 7 years ago - 2 comments

#80 - Add 'column_names_on_most_bottom' to draw ,heatmaplist method

Issue - State: closed - Opened by jokergoo over 7 years ago - 1 comment

#79 - Log space for colors

Issue - State: closed - Opened by kotliary over 7 years ago - 1 comment

#78 - the interactive version of ComplexHeatmap

Issue - State: closed - Opened by crazyhottommy over 7 years ago - 1 comment

#77 - not clustering multiple top annotation rows

Issue - State: closed - Opened by anu-bioinfo over 7 years ago - 1 comment

#76 - HeatmapAnnotation: Color issue

Issue - State: closed - Opened by kin182 over 7 years ago - 2 comments

#75 - Heatmap name not accepting expression or call

Issue - State: closed - Opened by staemmlord over 7 years ago - 4 comments

#74 - How to enforce square cells in heatmap

Issue - State: closed - Opened by ckuenne over 7 years ago - 2 comments

#73 - OncoPrint for 300 genes

Issue - State: closed - Opened by 1988liszt over 7 years ago - 5 comments

#72 - oncoprint column order and annotation

Issue - State: closed - Opened by crazyhottommy over 7 years ago - 3 comments

#71 - How can I change the fontsize of row names in Oncoprint

Issue - State: closed - Opened by 1988liszt over 7 years ago - 2 comments

#70 - How can I change the grid width and height for a character matrix?

Issue - State: closed - Opened by crazyhottommy over 7 years ago - 12 comments

#69 - cell_fun does not work properly if split is defined

Issue - State: closed - Opened by jokergoo over 7 years ago

#67 - Incorrect row order of outliers in anno_boxplot for row annotation

Issue - State: closed - Opened by jing-su over 7 years ago - 1 comment

#66 - `HeatmapAnnotation` error: length of simple annotations differ.

Issue - State: closed - Opened by msquatrito over 7 years ago - 2 comments

#65 - How can I control the space between rows (gene) of oncoprint?

Issue - State: closed - Opened by hongenxu over 7 years ago - 3 comments

#64 - legend border

Issue - State: closed - Opened by jokergoo over 7 years ago

#63 - merge heatmap legends and annotation legends

Issue - State: closed - Opened by jokergoo over 7 years ago - 4 comments

#62 - anno_barplot() supports stacked barplots

Issue - State: closed - Opened by jokergoo over 7 years ago

#61 - selectArea only works in the first heatmap

Issue - State: closed - Opened by jokergoo almost 8 years ago - 1 comment

#60 - clustering with mahalanobis distance

Issue - State: closed - Opened by crazyhottommy almost 8 years ago - 4 comments

#59 - color space from LAB to RGB

Issue - State: closed - Opened by crazyhottommy almost 8 years ago - 9 comments

#58 - bug when newpage = FALSE and rows are split

Issue - State: closed - Opened by jokergoo almost 8 years ago

#57 - Kmeans clustering for multiple ChIPSeq

Issue - State: closed - Opened by ckuenne almost 8 years ago - 4 comments

#56 - Error when combining named heatmap lists

Issue - State: closed - Opened by rbagd almost 8 years ago - 2 comments

#55 - `gap` in `Heatmap` doesn't work if there are more than one heatmaps

Issue - State: closed - Opened by jokergoo almost 8 years ago - 1 comment

#53 - if `col` has more items than in the annotation, do subsetting

Issue - State: closed - Opened by jokergoo almost 8 years ago

#52 - column_names_max_height does not work well

Issue - State: closed - Opened by jokergoo almost 8 years ago

#50 - How to write an cell_fun outside Heatmap()?

Issue - State: closed - Opened by lileok almost 8 years ago - 2 comments

#46 - when there are too many legends, should we put them into multiple colums/rows?

Issue - State: closed - Opened by jokergoo about 8 years ago - 10 comments

#45 - Add 'attach' in Heatmap

Issue - State: closed - Opened by jokergoo about 8 years ago

#44 - grobWidth(textGrob(labels, ...))

Issue - State: closed - Opened by jokergoo about 8 years ago

#43 - check if there is fastcluster package installed

Issue - State: closed - Opened by jokergoo about 8 years ago

#42 - Error if there is 'no' dendrogram to be drawn

Issue - State: closed - Opened by ringprince about 8 years ago - 2 comments

#41 - support clustering on columns in `densityHeatmap()`

Issue - State: closed - Opened by jokergoo about 8 years ago

#40 - dplyr select

Issue - State: closed - Opened by sahilseth about 8 years ago - 2 comments

#39 - Legend() may open a new graphic device

Issue - State: closed - Opened by jokergoo about 8 years ago - 2 comments

#38 - add annotation names by default

Issue - State: closed - Opened by jokergoo about 8 years ago - 1 comment

#37 - add subset functions for HeatmapAnnotation and SingleAnnotation class

Issue - State: closed - Opened by jokergoo about 8 years ago - 3 comments

#36 - add update() and summary() functions

Issue - State: closed - Opened by jokergoo about 8 years ago

#35 - heatmap legend

Issue - State: closed - Opened by jokergoo about 8 years ago

#34 - heatmap_legend_side does not moves the annotation legends

Issue - State: closed - Opened by tiagochst about 8 years ago - 14 comments

#33 - what does row_dend_reorder do?

Issue - State: closed - Opened by crazyhottommy about 8 years ago - 4 comments

#32 - How to split the heatmap based on dendextend::cuttree clusters?

Issue - State: closed - Opened by minisciencegirl about 8 years ago - 5 comments

#31 - Rotate a part of the dendrogram

Issue - State: closed - Opened by NicolasHipp about 8 years ago - 2 comments

#30 - split on columns?

Issue - State: closed - Opened by crazyhottommy about 8 years ago - 26 comments

#28 - retrieve row orders and clusters for k-means

Issue - State: closed - Opened by crazyhottommy over 8 years ago - 12 comments

#27 - Error in if (v[nm]) alter_fun[[nm]](x, y, w, h) :

Issue - State: closed - Opened by tiagochst over 8 years ago - 4 comments

#26 - Can we scale data and trim data for better presentation

Issue - State: closed - Opened by lileok over 8 years ago - 2 comments

#25 - Row_order - unused argument.

Issue - State: closed - Opened by fjrossello over 8 years ago - 3 comments

#24 - Is it possible to draw a vertical HeatmapList?

Issue - State: closed - Opened by johanneskoester over 8 years ago - 2 comments

#23 - OncoPrint in a Shiny app

Issue - State: closed - Opened by msquatrito over 8 years ago - 2 comments

#22 - Is there a way to use text annotations instead of colors ?

Issue - State: closed - Opened by sahilseth over 8 years ago - 6 comments

#21 - heatmap_legend_color_bar not recognized

Issue - State: closed - Opened by ycl6 over 8 years ago - 6 comments

#19 - Oncoprint with only one gene

Issue - State: closed - Opened by msquatrito over 8 years ago - 4 comments

#18 - Add row_order to plotDataFrame

Issue - State: closed - Opened by schelhorn over 8 years ago - 1 comment

#17 - Long column names getting cut off

Issue - State: closed - Opened by kcha over 8 years ago - 2 comments

#16 - Error in oncoPrint You should define shape function for:MUT:

Issue - State: closed - Opened by fromdputto over 8 years ago - 3 comments

#15 - heatmap_legend_side

Issue - State: closed - Opened by charlesmilk over 8 years ago - 4 comments

#14 - awesome interactive heatmaps

Issue - State: closed - Opened by sahilseth over 8 years ago - 1 comment

#13 - Parallel hclust using amap

Issue - State: closed - Opened by schelhorn almost 9 years ago - 2 comments

#12 - resolve conflicts

Pull Request - State: closed - Opened by jokergoo almost 9 years ago

#11 - Clarify values for heatmap_legend_color_bar param

Pull Request - State: closed - Opened by Hunter-Github almost 9 years ago - 1 comment

#10 - Error with plotDataFrame()

Issue - State: closed - Opened by kassambara almost 9 years ago - 2 comments

#9 - Greek symbols in titles?

Issue - State: closed - Opened by kcha almost 9 years ago - 2 comments

#8 - Reorder built-in hclust

Issue - State: closed - Opened by schelhorn about 9 years ago - 4 comments

#7 - row_order / column_order use character indices

Issue - State: closed - Opened by rmflight about 9 years ago - 3 comments

#6 - treat column and row annotations consistently

Issue - State: closed - Opened by rmflight about 9 years ago - 2 comments

#5 - Set custom row labels?

Issue - State: closed - Opened by kcha about 9 years ago - 2 comments

#4 - Colorbar

Issue - State: closed - Opened by slowkow about 9 years ago - 2 comments

#3 - Change the size of legend text?

Issue - State: closed - Opened by slowkow about 9 years ago - 7 comments

#2 - Does it accept NA value?

Issue - State: closed - Opened by wenbostar about 9 years ago - 3 comments

#1 - R 3.1.3 is not supported

Issue - State: closed - Opened by stenver about 9 years ago - 4 comments