Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / jokergoo/ComplexHeatmap issues and pull requests
#100 - legend_param should support modifying only one legend
Issue -
State: closed - Opened by jokergoo about 7 years ago
#99 - nested call to png() make errors when use_raster = TRUE
Issue -
State: closed - Opened by jokergoo about 7 years ago
- 1 comment
#98 - legend labels are wrong when putting in multiple columns
Issue -
State: closed - Opened by jokergoo about 7 years ago
- 1 comment
#97 - rowAnnotations and legend colors do not match
Issue -
State: closed - Opened by sbamin about 7 years ago
- 2 comments
#96 - densityHeatmap: add argument for `n`
Issue -
State: closed - Opened by jokergoo about 7 years ago
#95 - How to add a custom HeatmapAnnotation to rows in the oncoprint() funciton?
Issue -
State: closed - Opened by mpschr about 7 years ago
- 3 comments
#94 - oncoprint: also remove empty rows
Issue -
State: closed - Opened by jokergoo about 7 years ago
#93 - add anno_base() or anno_raster()
Issue -
State: closed - Opened by jokergoo about 7 years ago
#92 - use gridGraphics package
Issue -
State: closed - Opened by jokergoo about 7 years ago
#91 - non-numeric argument to binary operator
Issue -
State: closed - Opened by ATVincent about 7 years ago
- 7 comments
#90 - in row annotation, axis labels should be rotatad to face left or right
Issue -
State: closed - Opened by jokergoo about 7 years ago
#89 - Row order when using row_anno_link
Issue -
State: closed - Opened by dolevrahat about 7 years ago
- 6 comments
#88 - have two heatmap aligned vertically
Issue -
State: closed - Opened by LuyiTian about 7 years ago
- 5 comments
#87 - legends not repeated for duplicated annotation names
Issue -
State: closed - Opened by jokergoo about 7 years ago
#86 - vectorize oncoprint
Issue -
State: closed - Opened by jokergoo about 7 years ago
- 1 comment
#85 - use matrix as column annotation
Issue -
State: closed - Opened by jokergoo about 7 years ago
#84 - legend_direction = "horizontal" does not work when running on shiny server
Issue -
State: closed - Opened by jsimonas about 7 years ago
- 1 comment
#83 - trend annotation of clusters
Issue -
State: closed - Opened by ebioman about 7 years ago
- 2 comments
#82 - How to make continuous legend symmetric?
Issue -
State: closed - Opened by nachocab over 7 years ago
- 9 comments
#81 - anno_link not working on large heatmaps
Issue -
State: closed - Opened by nachocab over 7 years ago
- 2 comments
#80 - Add 'column_names_on_most_bottom' to draw ,heatmaplist method
Issue -
State: closed - Opened by jokergoo over 7 years ago
- 1 comment
#79 - Log space for colors
Issue -
State: closed - Opened by kotliary over 7 years ago
- 1 comment
#78 - the interactive version of ComplexHeatmap
Issue -
State: closed - Opened by crazyhottommy over 7 years ago
- 1 comment
#77 - not clustering multiple top annotation rows
Issue -
State: closed - Opened by anu-bioinfo over 7 years ago
- 1 comment
#76 - HeatmapAnnotation: Color issue
Issue -
State: closed - Opened by kin182 over 7 years ago
- 2 comments
#75 - Heatmap name not accepting expression or call
Issue -
State: closed - Opened by staemmlord over 7 years ago
- 4 comments
#74 - How to enforce square cells in heatmap
Issue -
State: closed - Opened by ckuenne over 7 years ago
- 2 comments
#73 - OncoPrint for 300 genes
Issue -
State: closed - Opened by 1988liszt over 7 years ago
- 5 comments
#72 - oncoprint column order and annotation
Issue -
State: closed - Opened by crazyhottommy over 7 years ago
- 3 comments
#71 - How can I change the fontsize of row names in Oncoprint
Issue -
State: closed - Opened by 1988liszt over 7 years ago
- 2 comments
#70 - How can I change the grid width and height for a character matrix?
Issue -
State: closed - Opened by crazyhottommy over 7 years ago
- 12 comments
#69 - cell_fun does not work properly if split is defined
Issue -
State: closed - Opened by jokergoo over 7 years ago
#68 - `gap` is not taken into account if annotation_height is absolute unit
Issue -
State: closed - Opened by jokergoo over 7 years ago
#67 - Incorrect row order of outliers in anno_boxplot for row annotation
Issue -
State: closed - Opened by jing-su over 7 years ago
- 1 comment
#66 - `HeatmapAnnotation` error: length of simple annotations differ.
Issue -
State: closed - Opened by msquatrito over 7 years ago
- 2 comments
#65 - How can I control the space between rows (gene) of oncoprint?
Issue -
State: closed - Opened by hongenxu over 7 years ago
- 3 comments
#64 - legend border
Issue -
State: closed - Opened by jokergoo over 7 years ago
#63 - merge heatmap legends and annotation legends
Issue -
State: closed - Opened by jokergoo over 7 years ago
- 4 comments
#62 - anno_barplot() supports stacked barplots
Issue -
State: closed - Opened by jokergoo over 7 years ago
#61 - selectArea only works in the first heatmap
Issue -
State: closed - Opened by jokergoo almost 8 years ago
- 1 comment
#60 - clustering with mahalanobis distance
Issue -
State: closed - Opened by crazyhottommy almost 8 years ago
- 4 comments
#59 - color space from LAB to RGB
Issue -
State: closed - Opened by crazyhottommy almost 8 years ago
- 9 comments
#58 - bug when newpage = FALSE and rows are split
Issue -
State: closed - Opened by jokergoo almost 8 years ago
#57 - Kmeans clustering for multiple ChIPSeq
Issue -
State: closed - Opened by ckuenne almost 8 years ago
- 4 comments
#56 - Error when combining named heatmap lists
Issue -
State: closed - Opened by rbagd almost 8 years ago
- 2 comments
#55 - `gap` in `Heatmap` doesn't work if there are more than one heatmaps
Issue -
State: closed - Opened by jokergoo almost 8 years ago
- 1 comment
#54 - the length of the `at` and `labels` in `Legend()` should be checked
Issue -
State: closed - Opened by jokergoo almost 8 years ago
#53 - if `col` has more items than in the annotation, do subsetting
Issue -
State: closed - Opened by jokergoo almost 8 years ago
#52 - column_names_max_height does not work well
Issue -
State: closed - Opened by jokergoo almost 8 years ago
#51 - order of annotation legend which come from different heatmap not correct
Issue -
State: closed - Opened by jokergoo almost 8 years ago
#50 - How to write an cell_fun outside Heatmap()?
Issue -
State: closed - Opened by lileok almost 8 years ago
- 2 comments
#49 - order of the legend sometimes are not same as column annotations
Issue -
State: closed - Opened by jokergoo about 8 years ago
#48 - add complexheatmap paper examples to the vignettes, also the blog link
Issue -
State: closed - Opened by jokergoo about 8 years ago
#47 - if rows are split, they should also be reordered by hierarchical clustering on mean values
Issue -
State: closed - Opened by jokergoo about 8 years ago
- 2 comments
#46 - when there are too many legends, should we put them into multiple colums/rows?
Issue -
State: closed - Opened by jokergoo about 8 years ago
- 10 comments
#45 - Add 'attach' in Heatmap
Issue -
State: closed - Opened by jokergoo about 8 years ago
#44 - grobWidth(textGrob(labels, ...))
Issue -
State: closed - Opened by jokergoo about 8 years ago
#43 - check if there is fastcluster package installed
Issue -
State: closed - Opened by jokergoo about 8 years ago
#42 - Error if there is 'no' dendrogram to be drawn
Issue -
State: closed - Opened by ringprince about 8 years ago
- 2 comments
#41 - support clustering on columns in `densityHeatmap()`
Issue -
State: closed - Opened by jokergoo about 8 years ago
#40 - dplyr select
Issue -
State: closed - Opened by sahilseth about 8 years ago
- 2 comments
#39 - Legend() may open a new graphic device
Issue -
State: closed - Opened by jokergoo about 8 years ago
- 2 comments
#38 - add annotation names by default
Issue -
State: closed - Opened by jokergoo about 8 years ago
- 1 comment
#37 - add subset functions for HeatmapAnnotation and SingleAnnotation class
Issue -
State: closed - Opened by jokergoo about 8 years ago
- 3 comments
#36 - add update() and summary() functions
Issue -
State: closed - Opened by jokergoo about 8 years ago
#35 - heatmap legend
Issue -
State: closed - Opened by jokergoo about 8 years ago
#34 - heatmap_legend_side does not moves the annotation legends
Issue -
State: closed - Opened by tiagochst about 8 years ago
- 14 comments
#33 - what does row_dend_reorder do?
Issue -
State: closed - Opened by crazyhottommy about 8 years ago
- 4 comments
#32 - How to split the heatmap based on dendextend::cuttree clusters?
Issue -
State: closed - Opened by minisciencegirl about 8 years ago
- 5 comments
#31 - Rotate a part of the dendrogram
Issue -
State: closed - Opened by NicolasHipp about 8 years ago
- 2 comments
#30 - split on columns?
Issue -
State: closed - Opened by crazyhottommy about 8 years ago
- 26 comments
#29 - When cluster with too many rows, the heatmap is too dense, and the file size is large.
Issue -
State: closed - Opened by crazyhottommy over 8 years ago
- 25 comments
#28 - retrieve row orders and clusters for k-means
Issue -
State: closed - Opened by crazyhottommy over 8 years ago
- 12 comments
#27 - Error in if (v[nm]) alter_fun[[nm]](x, y, w, h) :
Issue -
State: closed - Opened by tiagochst over 8 years ago
- 4 comments
#26 - Can we scale data and trim data for better presentation
Issue -
State: closed - Opened by lileok over 8 years ago
- 2 comments
#25 - Row_order - unused argument.
Issue -
State: closed - Opened by fjrossello over 8 years ago
- 3 comments
#24 - Is it possible to draw a vertical HeatmapList?
Issue -
State: closed - Opened by johanneskoester over 8 years ago
- 2 comments
#23 - OncoPrint in a Shiny app
Issue -
State: closed - Opened by msquatrito over 8 years ago
- 2 comments
#22 - Is there a way to use text annotations instead of colors ?
Issue -
State: closed - Opened by sahilseth over 8 years ago
- 6 comments
#21 - heatmap_legend_color_bar not recognized
Issue -
State: closed - Opened by ycl6 over 8 years ago
- 6 comments
#20 - Oncoprint: show_column_barplot = FALSE and show_row_barplot = FALSE change the color of the Annotation
Issue -
State: closed - Opened by msquatrito over 8 years ago
- 3 comments
#19 - Oncoprint with only one gene
Issue -
State: closed - Opened by msquatrito over 8 years ago
- 4 comments
#18 - Add row_order to plotDataFrame
Issue -
State: closed - Opened by schelhorn over 8 years ago
- 1 comment
#17 - Long column names getting cut off
Issue -
State: closed - Opened by kcha over 8 years ago
- 2 comments
#16 - Error in oncoPrint You should define shape function for:MUT:
Issue -
State: closed - Opened by fromdputto over 8 years ago
- 3 comments
#15 - heatmap_legend_side
Issue -
State: closed - Opened by charlesmilk over 8 years ago
- 4 comments
#14 - awesome interactive heatmaps
Issue -
State: closed - Opened by sahilseth over 8 years ago
- 1 comment
#13 - Parallel hclust using amap
Issue -
State: closed - Opened by schelhorn almost 9 years ago
- 2 comments
#12 - resolve conflicts
Pull Request -
State: closed - Opened by jokergoo almost 9 years ago
#11 - Clarify values for heatmap_legend_color_bar param
Pull Request -
State: closed - Opened by Hunter-Github almost 9 years ago
- 1 comment
#10 - Error with plotDataFrame()
Issue -
State: closed - Opened by kassambara almost 9 years ago
- 2 comments
#9 - Greek symbols in titles?
Issue -
State: closed - Opened by kcha almost 9 years ago
- 2 comments
#8 - Reorder built-in hclust
Issue -
State: closed - Opened by schelhorn about 9 years ago
- 4 comments
#7 - row_order / column_order use character indices
Issue -
State: closed - Opened by rmflight about 9 years ago
- 3 comments
#6 - treat column and row annotations consistently
Issue -
State: closed - Opened by rmflight about 9 years ago
- 2 comments
#5 - Set custom row labels?
Issue -
State: closed - Opened by kcha about 9 years ago
- 2 comments
#4 - Colorbar
Issue -
State: closed - Opened by slowkow about 9 years ago
- 2 comments
#3 - Change the size of legend text?
Issue -
State: closed - Opened by slowkow about 9 years ago
- 7 comments
#2 - Does it accept NA value?
Issue -
State: closed - Opened by wenbostar about 9 years ago
- 3 comments
#1 - R 3.1.3 is not supported
Issue -
State: closed - Opened by stenver about 9 years ago
- 4 comments