Ecosyste.ms: Issues

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GitHub / jni/skan issues and pull requests

#138 - Opt-in to find main branches

Pull Request - State: closed - Opened by jni over 3 years ago - 3 comments

#137 - Fix benchmarks and a bug when computing main branch in single cycle subgraph

Pull Request - State: closed - Opened by jni over 3 years ago

#136 - Use yapf for automatic formatting

Pull Request - State: closed - Opened by jni over 3 years ago

#135 - Use minimum spanning tree to simplify junctions

Pull Request - State: closed - Opened by jni over 3 years ago - 4 comments

#134 - Consider an auto-formatter

Issue - State: closed - Opened by jni over 3 years ago - 1 comment

#133 - Idea: don't collapse junction pixels

Issue - State: closed - Opened by jni over 3 years ago - 5 comments

#132 - Find nodes and endpoints coordinates

Issue - State: closed - Opened by nicobousquet over 3 years ago - 4 comments

#131 - Add dask array compatibility layer

Pull Request - State: open - Opened by jni over 3 years ago - 5 comments

#130 - Fix remaining issues with GitHub Actions

Issue - State: open - Opened by jni over 3 years ago - 1 comment

#129 - Remove unnecessary line in workflow

Pull Request - State: closed - Opened by marlene09 over 3 years ago - 1 comment

#128 - add test work flow

Pull Request - State: closed - Opened by marlene09 over 3 years ago

#127 - Add missing dependencies, change to setup.cfg

Pull Request - State: closed - Opened by jni over 3 years ago

#126 - Implement various measures of tortuosity

Issue - State: open - Opened by jni over 3 years ago - 2 comments

#125 - Move Documentation and testing CI to Github Actions

Issue - State: closed - Opened by jni over 3 years ago - 1 comment
Labels: good first issue

#124 - Support for distributed skeleton analysis

Pull Request - State: open - Opened by GenevieveBuckley over 3 years ago - 3 comments

#123 - Initial steps towards supporting distributed skeleton analysis

Pull Request - State: closed - Opened by GenevieveBuckley over 3 years ago - 1 comment

#122 - Move documentation to use jupyter-book instead of nb2plots

Issue - State: open - Opened by jni over 3 years ago
Labels: documentation

#121 - Better documentation for how skan handles skeleton junctions

Issue - State: open - Opened by jni over 3 years ago
Labels: documentation, good first issue

#120 - Consider removing degree image from Skeleton class

Issue - State: open - Opened by jni almost 4 years ago - 1 comment

#119 - Feature request: allow passing in pre-existing csr pixel graph to Skeleton obj

Issue - State: open - Opened by jni almost 4 years ago - 1 comment

#118 - Add feature to remove cycles from skeleton graph

Issue - State: open - Opened by jni almost 4 years ago - 13 comments

#117 - add path pruning, __array__ method, and longest shortest branch detection to Skeleton

Pull Request - State: closed - Opened by kevinyamauchi almost 4 years ago - 4 comments

#116 - Feature request: add napari plugin

Issue - State: open - Opened by jni almost 4 years ago - 5 comments

#115 - Notes on interacting with skeletons in napari

Issue - State: open - Opened by jni almost 4 years ago

#114 - Should path indices start from 1?

Issue - State: open - Opened by jni almost 4 years ago

#113 - requirements are not declared in setup.py or setup.cfg

Issue - State: closed - Opened by jni almost 4 years ago - 1 comment
Labels: good first issue

#112 - Allow manual specification of the buffer size

Pull Request - State: closed - Opened by jni almost 4 years ago

#110 - Add Binder badge.

Pull Request - State: closed - Opened by mkcor almost 4 years ago

#109 - Branch thickness

Issue - State: open - Opened by piango almost 4 years ago - 5 comments

#101 - [WIP] Get maximum branch

Pull Request - State: open - Opened by snowformatics over 4 years ago - 7 comments

#98 - Documentation: visualise 2D and 3D networks in napari

Issue - State: closed - Opened by jni over 4 years ago - 4 comments
Labels: good first issue

#97 - Feature request: Add function to prune skeleton

Issue - State: open - Opened by jni over 4 years ago - 1 comment

#94 - Add versioned docs with doctr_versions_menu

Issue - State: closed - Opened by jni over 4 years ago

#90 - ValueError: cannot infer dimensions from zero sized index arrays

Issue - State: open - Opened by ArnimJenett over 4 years ago - 10 comments
Labels: bug

#67 - Replace NavToolbar2TkAgg with NavToolbar2Tk

Pull Request - State: closed - Opened by jni over 6 years ago

#64 - Add ; shortcut to overlay skeleton in overlay plots

Pull Request - State: closed - Opened by jni almost 7 years ago - 1 comment

#63 - Add high resolution images in documentation

Pull Request - State: closed - Opened by jni almost 7 years ago - 1 comment

#28 - Allow measurement of mean pixel values along skeleton

Pull Request - State: closed - Opened by jni almost 8 years ago - 1 comment