Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / jmtyszka/bidskit issues and pull requests
#132 - Error "No DICOM header information found in"
Issue -
State: closed - Opened by adamculbreth 19 days ago
- 3 comments
#131 - Blip up/down for multi-echo
Issue -
State: open - Opened by zhengchencai 4 months ago
#130 - Unclear specifications/ lack of examples of "Protocol_Translator.json" file
Issue -
State: open - Opened by ruben-stanford 6 months ago
#129 - Unable to run bidskit - "TypeError: Expected maxsize to be an integer or None"
Issue -
State: open - Opened by ruben-stanford 6 months ago
- 3 comments
#128 - Files are overwritten on the second pass
Issue -
State: open - Opened by gauvinalexandre 11 months ago
- 1 comment
Labels: bug
#127 - update Dockerfile to ubuntu:22.04 and related dependencies
Pull Request -
State: closed - Opened by LixiangXu about 1 year ago
- 1 comment
#126 - 125 session flag
Pull Request -
State: closed - Opened by jmtyszka about 1 year ago
#125 - session flag
Issue -
State: closed - Opened by trevorbryanjackson about 1 year ago
Labels: feature request
#124 - Added access to a dcm2niix flag for ignoring certain images
Pull Request -
State: closed - Opened by vnckppl about 1 year ago
- 1 comment
#123 - Cannot convert Tilted CT Scan
Issue -
State: open - Opened by gauvinalexandre about 1 year ago
#122 - Cannot debug bidskit
Issue -
State: open - Opened by gauvinalexandre about 1 year ago
#121 - IntendedFor fields with incorrect slash when running in Windows
Issue -
State: open - Opened by alexsayal over 1 year ago
#120 - Acquisition suffix is duplicated when multiple runs
Issue -
State: closed - Opened by gauvinalexandre over 1 year ago
- 5 comments
#119 - Question about data structuring prior to running BIDSKIT
Issue -
State: open - Opened by ChristineFarrugia over 1 year ago
#118 - Error when using --no-sessions option and only one subject is converted
Issue -
State: closed - Opened by gauvinalexandre over 1 year ago
- 2 comments
Labels: bug
#117 - Second pass issue
Issue -
State: open - Opened by CatalinaTLl over 1 year ago
- 1 comment
Labels: question
#116 - Not anonymizing
Issue -
State: open - Opened by CatalinaTLl over 1 year ago
- 1 comment
#115 - Read-the-Docs page is an empty stub
Issue -
State: open - Opened by dkp almost 2 years ago
#114 - Second pass error : KeyError: 'ScanningSequence'
Issue -
State: open - Opened by elPreeto almost 2 years ago
- 3 comments
Labels: bug
#113 - .bval and .bvec export depends on dwi filename
Issue -
State: open - Opened by davidrs06 almost 2 years ago
- 2 comments
#112 - 'SerDesc' key error
Issue -
State: closed - Opened by ChristineFarrugia almost 2 years ago
- 4 comments
#111 - Second pass error
Issue -
State: closed - Opened by hbaagil about 2 years ago
- 6 comments
#110 - Switched to BIDS compliant templates for top-level files like README.md
Pull Request -
State: closed - Opened by jmtyszka about 2 years ago
#109 - default readme in BIDS dataset after conversion
Issue -
State: closed - Opened by Remi-Gau about 2 years ago
- 3 comments
Labels: enhancement
#108 - Development
Pull Request -
State: closed - Opened by jmtyszka about 2 years ago
#107 - BIDS validation error for fieldmaps after conversion
Issue -
State: closed - Opened by zhengchencai over 2 years ago
- 16 comments
#106 - Illegal characters not stripped in BIDS filename key values with --auto
Issue -
State: closed - Opened by jmtyszka over 2 years ago
- 1 comment
Labels: bug
#105 - Uncompressed but gz extension
Issue -
State: closed - Opened by jmtyszka over 2 years ago
- 1 comment
Labels: bug
#104 - New 'auto' feature was on by default
Pull Request -
State: closed - Opened by alexsayal over 2 years ago
- 1 comment
#103 - Update fmaps.py
Pull Request -
State: closed - Opened by alexsayal over 2 years ago
#102 - JSON files for magnitude images
Issue -
State: closed - Opened by alexsayal over 2 years ago
- 1 comment
#101 - Development
Pull Request -
State: closed - Opened by jmtyszka over 2 years ago
#100 - Documentation for Injecting New Subjects into BIDS Directory
Issue -
State: closed - Opened by claytonjschneider over 2 years ago
- 4 comments
Labels: documentation
#99 - Fixed bug following : https://github.com/jmtyszka/bidskit/issues/72
Pull Request -
State: closed - Opened by AsliErdemli over 2 years ago
- 1 comment
#98 - --bind-fmaps not yet set up to work with --no-sessions
Issue -
State: closed - Opened by sarahoh over 2 years ago
- 6 comments
#97 - Adding flexibility to --bind-fmaps
Issue -
State: open - Opened by sarahoh over 2 years ago
Labels: feature request
#96 - TypeError: can only concatenate list (not "str") to list
Issue -
State: closed - Opened by jawaltz over 2 years ago
- 6 comments
#95 - adding an option to check Protocol_Translator.json
Issue -
State: open - Opened by sarahoh over 2 years ago
Labels: feature request
#94 - Pin pybids version to 0.12.4 for now.
Pull Request -
State: closed - Opened by jmtyszka over 2 years ago
#93 - Development
Pull Request -
State: closed - Opened by jmtyszka over 2 years ago
#92 - Implement Support for Scans.tsv
Issue -
State: open - Opened by claytonjschneider over 2 years ago
Labels: feature request
#91 - Development pull
Pull Request -
State: closed - Opened by jmtyszka over 2 years ago
#90 - Adding key to structural scan filenames to indicate bias correction
Issue -
State: closed - Opened by sarahoh over 2 years ago
- 2 comments
Labels: feature request
#89 - RPE image IntendedFor correcting DWI: IntendedFor field does not populate
Issue -
State: closed - Opened by dkp over 2 years ago
- 3 comments
#88 - Remove zero-pad from run number
Pull Request -
State: closed - Opened by alexsayal almost 3 years ago
- 1 comment
#87 - Can we anonymize data while converting?
Issue -
State: closed - Opened by zhengchencai almost 3 years ago
- 1 comment
#86 - Issue with 'Intended for' field
Issue -
State: closed - Opened by tstoica about 3 years ago
- 3 comments
#85 - Installation told me to ask for help?
Issue -
State: closed - Opened by katedamme about 3 years ago
- 1 comment
#84 - --bind_fmaps flag is misidentified in --help menu
Issue -
State: closed - Opened by davekahn over 3 years ago
- 1 comment
#83 - Compatibility with pybids 0.13.x
Issue -
State: closed - Opened by jmtyszka over 3 years ago
Labels: bug, Compatibility
#82 - Pin pybids version to 0.12.4 in Dockerfile
Pull Request -
State: closed - Opened by alexenge over 3 years ago
- 1 comment
#81 - Running bidskit via Docker image fails due to pybids update
Issue -
State: closed - Opened by alexenge over 3 years ago
#80 - Detect TaskName for seq_name other than 'EP'
Pull Request -
State: closed - Opened by alexenge over 3 years ago
- 1 comment
#79 - Passing custom options to dcm2niix
Issue -
State: closed - Opened by alexenge over 3 years ago
- 1 comment
Labels: feature request
#78 - Development
Pull Request -
State: closed - Opened by jmtyszka over 3 years ago
#77 - UnicodeDecodeError: ascii codec can't decode
Issue -
State: closed - Opened by hpsaarimaki almost 4 years ago
- 4 comments
#76 - Sanity check for duplicate output filenames
Issue -
State: closed - Opened by jmtyszka almost 4 years ago
- 1 comment
Labels: enhancement, feature request
#75 - Issues with BOLD SBRefs
Issue -
State: closed - Opened by davekahn almost 4 years ago
- 2 comments
Labels: feature request
#74 - Flag on initial run without sourcedata directory
Issue -
State: closed - Opened by davekahn about 4 years ago
- 1 comment
Labels: feature request
#73 - Mishandling GRE fieldmaps when individual echo phase images present
Issue -
State: closed - Opened by jmtyszka about 4 years ago
- 1 comment
Labels: bug
#72 - run- label issue with anat-entity.
Issue -
State: closed - Opened by JasonProtoMe over 4 years ago
- 2 comments
Labels: bug, feature request
#71 - DICOMDIR as input
Issue -
State: closed - Opened by alexsayal over 4 years ago
- 1 comment
Labels: feature request
#70 - More than one sequence with the same name
Issue -
State: closed - Opened by alexsayal over 4 years ago
- 5 comments
Labels: bug
#69 - Automatic update of protocol_translator when adding new sourcedata?
Issue -
State: open - Opened by hippocampo over 4 years ago
- 1 comment
Labels: feature request
#68 - typo - missing quote
Pull Request -
State: closed - Opened by dmd almost 5 years ago
#67 - clarification on sourcedata requirements
Issue -
State: closed - Opened by dmd almost 5 years ago
- 8 comments
Labels: bug, question
#66 - Docker build . fails in pybids install
Issue -
State: closed - Opened by dmd almost 5 years ago
- 2 comments
#65 - Update dependencies
Pull Request -
State: closed - Opened by pn2200 almost 5 years ago
- 2 comments
#64 - ImportError: No module named 'bids'
Issue -
State: closed - Opened by pn2200 almost 5 years ago
- 2 comments
Labels: bug
#63 - Update docker run command in QuickStart
Pull Request -
State: closed - Opened by pn2200 almost 5 years ago
#62 - KeyError
Issue -
State: closed - Opened by hippocampo almost 5 years ago
- 3 comments
#61 - Subject/session names cannot contain "-" or "_"
Issue -
State: closed - Opened by villalonreina about 5 years ago
- 2 comments
#60 - bidskit 1.2.3 not completing 1st pass file conversions
Issue -
State: closed - Opened by idroberts about 5 years ago
- 2 comments
#59 - subject flag
Issue -
State: closed - Opened by doritdorit about 5 years ago
- 2 comments
Labels: feature request
#58 - Error with first pass
Issue -
State: closed - Opened by trevorbryanjackson about 5 years ago
- 3 comments
Labels: bug
#57 - Development
Pull Request -
State: closed - Opened by jmtyszka over 5 years ago
#56 - Development
Pull Request -
State: closed - Opened by jmtyszka over 5 years ago
#55 - run numbering when several SerDesc have the same BIDS_Name in Protocol_Translator
Issue -
State: closed - Opened by jcrdubois over 5 years ago
#54 - v1.2.1 Add check for external bids-validator
Pull Request -
State: closed - Opened by jmtyszka over 5 years ago
#53 - Bids 1.2
Pull Request -
State: closed - Opened by jmtyszka over 5 years ago
#52 - source & derivatives naming scheme
Issue -
State: closed - Opened by jcrdubois over 5 years ago
- 2 comments
Labels: enhancement
#51 - fix run ordering
Pull Request -
State: closed - Opened by jcrdubois over 5 years ago
- 1 comment
#50 - NifTI files erroneously skipped when "* JSON sidecar not found" due to premature termination of a for loop
Issue -
State: closed - Opened by ToeKneeFan over 5 years ago
- 1 comment
#49 - events.tsv not properly created
Issue -
State: closed - Opened by Jihyuncindyhur over 5 years ago
- 1 comment
#48 - run order not preserved
Issue -
State: closed - Opened by yonestar almost 6 years ago
- 3 comments
#47 - Robust response to absence of DICOM files in top level of DICOM directory.
Pull Request -
State: closed - Opened by jmtyszka almost 6 years ago
#46 - .gz files not actually gzipped
Issue -
State: closed - Opened by zanderso13 almost 6 years ago
- 6 comments
#45 - Added options to prune nonexistent IntendedFor entries from json file…
Pull Request -
State: closed - Opened by johncholewa almost 6 years ago
#44 - Enhance field map support
Pull Request -
State: closed - Opened by rhancockn almost 6 years ago
#43 - IntendedFor should populate only if the file pointed at exists
Issue -
State: closed - Opened by argyelan almost 6 years ago
Labels: feature request
#42 - participants.tsv and keys in dict handled better
Pull Request -
State: closed - Opened by argyelan about 6 years ago
#41 - To make it compatible with hub.docker.com autobuild
Pull Request -
State: closed - Opened by argyelan about 6 years ago
#40 - Updating dcm2bids.py to be compatible with sbref in dwi
Pull Request -
State: closed - Opened by argyelan about 6 years ago
- 1 comment
#39 - Issue with fieldmap conversion
Issue -
State: closed - Opened by tragus1 over 6 years ago
- 6 comments
#38 - UnicodeDecodeError: ascii codec can't decode
Issue -
State: closed - Opened by laurenbreithaupt over 6 years ago
- 3 comments
#37 - IntendedFor should include ses-XX prefix
Issue -
State: closed - Opened by yonestar over 6 years ago
- 1 comment
Labels: feature request
#36 - IntendedFor field with multiple targets
Issue -
State: closed - Opened by yonestar over 6 years ago
- 2 comments
Labels: bug
#35 - docker conversion
Issue -
State: closed - Opened by tragus1 over 6 years ago
- 2 comments
#34 - Use python3 rather than generic python interpreter
Pull Request -
State: closed - Opened by celstark over 6 years ago
- 1 comment
#33 - IntendedFor field in json does not have 'run-0X' in filename
Issue -
State: closed - Opened by yonestar over 6 years ago
- 2 comments